data_FMU # _chem_comp.id FMU _chem_comp.name "5-FLUORO-5-METHYLURIDINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H16 F N2 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-01-06 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.214 _chem_comp.one_letter_code N _chem_comp.three_letter_code FMU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2BH2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FMU N1 N1 N 0 1 N N N 79.069 -0.492 19.581 0.452 2.524 0.177 N1 FMU 1 FMU N3 N3 N 0 1 N N N 79.459 -0.183 17.295 -1.175 4.209 0.434 N3 FMU 2 FMU O2 O2 O 0 1 N N N 78.838 1.472 18.559 -0.185 3.283 2.283 O2 FMU 3 FMU C5 C5 C 0 1 N N S 79.587 -2.502 18.216 -0.196 3.871 -1.775 C5 FMU 4 FMU C2 C2 C 0 1 N N N 79.107 0.278 18.478 -0.286 3.323 1.055 C2 FMU 5 FMU C5M C5M C 0 1 N N N 78.398 -3.454 17.951 -0.617 3.810 -3.239 C5M FMU 6 FMU C6 C6 C 0 1 N N N 79.527 -1.902 19.630 0.131 2.483 -1.245 C6 FMU 7 FMU "C1'" C1* C 0 1 N N R 78.688 0.073 20.862 1.373 1.543 0.675 "C1'" FMU 8 FMU C4 C4 C 0 1 N N N 79.770 -1.468 17.069 -1.268 4.520 -0.920 C4 FMU 9 FMU O4 O4 O 0 1 N N N 80.080 -1.875 15.956 -2.097 5.311 -1.367 O4 FMU 10 FMU "C2'" C2* C 0 1 N N R 79.316 1.417 21.334 0.748 0.163 0.786 "C2'" FMU 11 FMU "O2'" O2* O 0 1 N N N 79.871 1.294 22.647 0.137 -0.058 2.041 "O2'" FMU 12 FMU "C3'" C3* C 0 1 N N S 78.109 2.339 21.436 1.940 -0.742 0.560 "C3'" FMU 13 FMU "C4'" C4* C 0 1 N N R 77.008 1.322 21.741 2.725 0.023 -0.498 "C4'" FMU 14 FMU "O3'" O3* O 0 1 N N N 78.260 3.215 22.519 2.742 -0.809 1.739 "O3'" FMU 15 FMU "O4'" O4* O 0 1 N N N 77.281 0.242 20.814 2.470 1.422 -0.246 "O4'" FMU 16 FMU "C5'" C5* C 0 1 N N N 75.611 1.807 21.378 2.282 -0.292 -1.921 "C5'" FMU 17 FMU "O5'" O5* O 0 1 N N N 74.730 0.677 21.490 3.063 0.476 -2.819 "O5'" FMU 18 FMU P P P 0 1 N N N 73.367 0.734 22.300 2.787 0.324 -4.407 P FMU 19 FMU O1P O1P O 0 1 N N N 72.600 2.064 22.042 2.921 -1.270 -4.647 O1P FMU 20 FMU O2P O2P O 0 1 N N N 72.587 -0.596 22.166 3.659 1.172 -5.286 O2P FMU 21 FMU O3P O3P O 0 1 N Y N ? ? ? 1.198 0.588 -4.548 O3P FMU 22 FMU F F F 0 1 N N N 80.717 -3.227 18.172 0.945 4.622 -1.717 F FMU 23 FMU H3 H3 H 0 1 N N N 79.497 0.470 16.512 -1.806 4.713 1.051 H3 FMU 24 FMU H5M1 1H5M H 0 0 N N N 78.441 -3.889 16.925 0.069 3.178 -3.810 H5M1 FMU 25 FMU H5M2 2H5M H 0 0 N N N 77.422 -2.948 18.138 -1.626 3.396 -3.332 H5M2 FMU 26 FMU H5M3 3H5M H 0 0 N N N 78.332 -4.250 18.729 -0.613 4.811 -3.681 H5M3 FMU 27 FMU H6C1 1H6C H 0 0 N N N 78.898 -2.518 20.314 -0.715 1.796 -1.367 H6C1 FMU 28 FMU H6C2 2H6C H 0 0 N N N 80.501 -2.002 20.163 0.999 2.077 -1.777 H6C2 FMU 29 FMU "H1'" H1* H 0 1 N N N 78.907 -0.692 21.643 1.754 1.910 1.633 "H1'" FMU 30 FMU "H2'" H2* H 0 1 N N N 80.066 1.800 20.604 -0.000 0.004 -0.000 "H2'" FMU 31 FMU HA HA H 0 1 N N N 80.254 2.114 22.935 -0.770 0.289 1.984 HA FMU 32 FMU "H3'" H3* H 0 1 N N N 77.920 2.885 20.482 1.675 -1.764 0.277 "H3'" FMU 33 FMU "H4'" H4* H 0 1 N N N 77.057 0.973 22.799 3.804 -0.139 -0.410 "H4'" FMU 34 FMU HB HB H 0 1 N N N 77.507 3.790 22.583 3.278 -0.001 1.752 HB FMU 35 FMU "H5'1" 1H5* H 0 0 N N N 75.565 2.301 20.379 1.229 -0.035 -2.051 "H5'1" FMU 36 FMU "H5'2" 2H5* H 0 0 N N N 75.280 2.682 21.985 2.428 -1.352 -2.133 "H5'2" FMU 37 FMU H3P H3P H 0 1 N N N -0.816 0.034 0.485 0.799 0.616 -5.443 H3P FMU 38 FMU HO1 HO1 H 0 1 N N N 72.444 2.505 22.869 2.886 -1.617 -5.563 HO1 FMU 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FMU N1 C2 SING N N 1 FMU N1 C6 SING N N 2 FMU N1 "C1'" SING N N 3 FMU N3 C2 SING N N 4 FMU N3 C4 SING N N 5 FMU N3 H3 SING N N 6 FMU O2 C2 DOUB N N 7 FMU C5 C5M SING N N 8 FMU C5 C6 SING N N 9 FMU C5 C4 SING N N 10 FMU C5 F SING N N 11 FMU C5M H5M1 SING N N 12 FMU C5M H5M2 SING N N 13 FMU C5M H5M3 SING N N 14 FMU C6 H6C1 SING N N 15 FMU C6 H6C2 SING N N 16 FMU "C1'" "C2'" SING N N 17 FMU "C1'" "O4'" SING N N 18 FMU "C1'" "H1'" SING N N 19 FMU C4 O4 DOUB N N 20 FMU "C2'" "O2'" SING N N 21 FMU "C2'" "C3'" SING N N 22 FMU "C2'" "H2'" SING N N 23 FMU "O2'" HA SING N N 24 FMU "C3'" "C4'" SING N N 25 FMU "C3'" "O3'" SING N N 26 FMU "C3'" "H3'" SING N N 27 FMU "C4'" "O4'" SING N N 28 FMU "C4'" "C5'" SING N N 29 FMU "C4'" "H4'" SING N N 30 FMU "O3'" HB SING N N 31 FMU "C5'" "O5'" SING N N 32 FMU "C5'" "H5'1" SING N N 33 FMU "C5'" "H5'2" SING N N 34 FMU "O5'" P SING N N 35 FMU P O1P SING N N 36 FMU P O2P DOUB N N 37 FMU P O3P SING N N 38 FMU O3P H3P SING N N 39 FMU HO1 O1P SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FMU SMILES ACDLabs 10.04 "O=C1N(CC(F)(C(=O)N1)C)C2OC(C(O)C2O)COP(=O)(O)O" FMU SMILES_CANONICAL CACTVS 3.341 "C[C@]1(F)CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)NC1=O" FMU SMILES CACTVS 3.341 "C[C]1(F)CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)NC1=O" FMU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@]1(CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)F" FMU SMILES "OpenEye OEToolkits" 1.5.0 "CC1(CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)F" FMU InChI InChI 1.03 "InChI=1S/C10H16FN2O9P/c1-10(11)3-13(9(17)12-8(10)16)7-6(15)5(14)4(22-7)2-21-23(18,19)20/h4-7,14-15H,2-3H2,1H3,(H,12,16,17)(H2,18,19,20)/t4-,5-,6-,7-,10+/m1/s1" FMU InChIKey InChI 1.03 MVSQIWGOIJYVSH-NVABTJCQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FMU "SYSTEMATIC NAME" ACDLabs 10.04 ;5-fluoro-5-methyluridine 5'-(dihydrogen phosphate) ; FMU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-[(5S)-5-fluoro-5-methyl-2,4-dioxo-1,3-diazinan-1-yl]-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FMU "Create component" 2005-01-06 EBI FMU "Modify descriptor" 2011-06-04 RCSB #