data_G5D # _chem_comp.id G5D _chem_comp.name "4-({4-[(1S,4S)-5-(cyanoacetyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyrimidin-2-yl}amino)-N-ethylbenzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-05-04 _chem_comp.pdbx_modified_date 2018-08-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.453 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G5D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6DBK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G5D N3 N1 N 0 1 N N N 7.908 -8.468 15.107 2.923 -0.575 -0.833 N3 G5D 1 G5D C4 C1 C 0 1 Y N N 10.168 -11.278 14.491 -0.255 -2.391 -0.938 C4 G5D 2 G5D N2 N2 N 0 1 Y N N 10.004 -12.015 15.604 -1.075 -1.384 -0.676 N2 G5D 3 G5D C7 C2 C 0 1 N N N 5.727 -7.662 15.749 4.704 1.049 -0.854 C7 G5D 4 G5D C6 C3 C 0 1 N N S 7.279 -6.266 14.555 4.305 -0.217 1.116 C6 G5D 5 G5D C9 C4 C 0 1 Y N N 8.047 -12.142 18.729 -2.852 0.586 -0.031 C9 G5D 6 G5D C13 C5 C 0 1 Y N N 6.332 -11.010 19.982 -4.582 -0.895 0.723 C13 G5D 7 G5D C20 C6 C 0 1 N N N 3.849 -10.982 23.624 -9.332 0.316 0.241 C20 G5D 8 G5D C21 C7 C 0 1 N N N 2.545 -11.781 23.657 -10.166 1.478 -0.303 C21 G5D 9 G5D C8 C8 C 0 1 N N S 7.203 -7.789 16.222 3.180 0.876 -0.569 C8 G5D 10 G5D N5 N3 N 0 1 N N N 8.910 -12.325 17.633 -1.499 0.865 -0.201 N5 G5D 11 G5D C18 C9 C 0 1 N N N 5.106 -5.411 12.658 7.672 0.924 -0.495 C18 G5D 12 G5D C16 C10 C 0 1 N N N 7.699 -6.328 16.051 3.202 0.896 1.001 C16 G5D 13 G5D C19 C11 C 0 1 N N N 3.949 -5.314 11.796 9.054 0.688 -0.048 C19 G5D 14 G5D C1 C12 C 0 1 Y N N 9.074 -11.513 16.516 -0.608 -0.161 -0.473 C1 G5D 15 G5D N1 N4 N 0 1 Y N N 8.368 -10.344 16.397 0.688 0.106 -0.523 N1 G5D 16 G5D C2 C13 C 0 1 Y N N 8.612 -9.642 15.233 1.567 -0.857 -0.781 C2 G5D 17 G5D C3 C14 C 0 1 Y N N 9.496 -10.085 14.228 1.105 -2.158 -0.994 C3 G5D 18 G5D C5 C15 C 0 1 N N N 8.063 -7.502 13.994 3.661 -1.318 0.217 C5 G5D 19 G5D N4 N5 N 0 1 N N N 5.859 -6.650 14.661 5.385 0.362 0.264 N4 G5D 20 G5D C10 C16 C 0 1 Y N N 8.218 -13.039 19.805 -3.810 1.503 -0.453 C10 G5D 21 G5D C11 C17 C 0 1 Y N N 7.484 -12.879 20.964 -5.148 1.227 -0.291 C11 G5D 22 G5D C12 C18 C 0 1 Y N N 6.565 -11.836 21.071 -5.546 0.024 0.299 C12 G5D 23 G5D C14 C19 C 0 1 Y N N 7.057 -11.162 18.805 -3.245 -0.613 0.558 C14 G5D 24 G5D C15 C20 C 0 1 N N N 5.932 -11.608 22.393 -6.980 -0.274 0.475 C15 G5D 25 G5D O1 O1 O 0 1 N N N 6.571 -11.719 23.438 -7.324 -1.321 0.989 O1 G5D 26 G5D N6 N6 N 0 1 N N N 4.594 -11.253 22.392 -7.908 0.613 0.066 N6 G5D 27 G5D C17 C21 C 0 1 N N N 4.820 -6.375 13.793 6.714 0.276 0.472 C17 G5D 28 G5D O2 O2 O 0 1 N N N 3.724 -6.884 13.988 7.139 -0.323 1.437 O2 G5D 29 G5D N7 N7 N 0 1 N N N 3.029 -5.246 11.102 10.121 0.506 0.297 N7 G5D 30 G5D H2 H1 H 0 1 N N N 10.868 -11.635 13.750 -0.645 -3.385 -1.101 H2 G5D 31 G5D H6 H2 H 0 1 N N N 5.074 -7.302 16.558 4.967 0.582 -1.802 H6 G5D 32 G5D H7 H3 H 0 1 N N N 5.343 -8.619 15.366 4.968 2.107 -0.867 H7 G5D 33 G5D H5 H4 H 0 1 N N N 7.494 -5.313 14.049 4.595 -0.512 2.124 H5 G5D 34 G5D H12 H5 H 0 1 N N N 5.578 -10.239 20.049 -4.886 -1.826 1.179 H12 G5D 35 G5D H19 H6 H 0 1 N N N 4.467 -11.265 24.489 -9.547 0.180 1.301 H19 G5D 36 G5D H20 H7 H 0 1 N N N 3.615 -9.908 23.675 -9.583 -0.595 -0.301 H20 G5D 37 G5D H23 H8 H 0 1 N N N 2.004 -11.562 24.589 -11.225 1.258 -0.173 H23 G5D 38 G5D H21 H9 H 0 1 N N N 1.921 -11.500 22.796 -9.915 2.390 0.239 H21 G5D 39 G5D H22 H10 H 0 1 N N N 2.773 -12.856 23.609 -9.950 1.615 -1.363 H22 G5D 40 G5D H8 H11 H 0 1 N N N 7.340 -8.218 17.225 2.513 1.580 -1.067 H8 G5D 41 G5D H9 H12 H 0 1 N N N 9.480 -13.146 17.661 -1.180 1.779 -0.130 H9 G5D 42 G5D H18 H13 H 0 1 N N N 5.965 -5.776 12.076 7.480 1.997 -0.532 H18 G5D 43 G5D H17 H14 H 0 1 N N N 5.338 -4.418 13.071 7.532 0.495 -1.487 H17 G5D 44 G5D H15 H15 H 0 1 N N N 8.782 -6.214 16.205 2.252 0.584 1.434 H15 G5D 45 G5D H16 H16 H 0 1 N N N 7.161 -5.608 16.685 3.537 1.854 1.399 H16 G5D 46 G5D H1 H17 H 0 1 N N N 9.644 -9.534 13.311 1.795 -2.961 -1.205 H1 G5D 47 G5D H4 H18 H 0 1 N N N 7.610 -7.880 13.066 2.974 -1.929 0.802 H4 G5D 48 G5D H3 H19 H 0 1 N N N 9.121 -7.261 13.814 4.434 -1.940 -0.232 H3 G5D 49 G5D H10 H20 H 0 1 N N N 8.924 -13.852 19.722 -3.502 2.433 -0.909 H10 G5D 50 G5D H11 H21 H 0 1 N N N 7.622 -13.563 21.789 -5.891 1.940 -0.619 H11 G5D 51 G5D H13 H22 H 0 1 N N N 6.855 -10.526 17.956 -2.500 -1.323 0.885 H13 G5D 52 G5D H14 H23 H 0 1 N N N 4.117 -11.179 21.516 -7.634 1.448 -0.344 H14 G5D 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G5D N7 C19 TRIP N N 1 G5D C19 C18 SING N N 2 G5D C18 C17 SING N N 3 G5D C17 O2 DOUB N N 4 G5D C17 N4 SING N N 5 G5D C5 C6 SING N N 6 G5D C5 N3 SING N N 7 G5D C3 C4 DOUB Y N 8 G5D C3 C2 SING Y N 9 G5D C4 N2 SING Y N 10 G5D C6 N4 SING N N 11 G5D C6 C16 SING N N 12 G5D N4 C7 SING N N 13 G5D N3 C2 SING N N 14 G5D N3 C8 SING N N 15 G5D C2 N1 DOUB Y N 16 G5D N2 C1 DOUB Y N 17 G5D C7 C8 SING N N 18 G5D C16 C8 SING N N 19 G5D N1 C1 SING Y N 20 G5D C1 N5 SING N N 21 G5D N5 C9 SING N N 22 G5D C9 C14 DOUB Y N 23 G5D C9 C10 SING Y N 24 G5D C14 C13 SING Y N 25 G5D C10 C11 DOUB Y N 26 G5D C13 C12 DOUB Y N 27 G5D C11 C12 SING Y N 28 G5D C12 C15 SING N N 29 G5D N6 C15 SING N N 30 G5D N6 C20 SING N N 31 G5D C15 O1 DOUB N N 32 G5D C20 C21 SING N N 33 G5D C4 H2 SING N N 34 G5D C7 H6 SING N N 35 G5D C7 H7 SING N N 36 G5D C6 H5 SING N N 37 G5D C13 H12 SING N N 38 G5D C20 H19 SING N N 39 G5D C20 H20 SING N N 40 G5D C21 H23 SING N N 41 G5D C21 H21 SING N N 42 G5D C21 H22 SING N N 43 G5D C8 H8 SING N N 44 G5D N5 H9 SING N N 45 G5D C18 H18 SING N N 46 G5D C18 H17 SING N N 47 G5D C16 H15 SING N N 48 G5D C16 H16 SING N N 49 G5D C3 H1 SING N N 50 G5D C5 H4 SING N N 51 G5D C5 H3 SING N N 52 G5D C10 H10 SING N N 53 G5D C11 H11 SING N N 54 G5D C14 H13 SING N N 55 G5D N6 H14 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G5D SMILES ACDLabs 12.01 "N4(c1nc(ncc1)Nc2ccc(cc2)C(=O)NCC)C3CN(C(C3)C4)C(CC#N)=O" G5D InChI InChI 1.03 "InChI=1S/C21H23N7O2/c1-2-23-20(30)14-3-5-15(6-4-14)25-21-24-10-8-18(26-21)27-12-17-11-16(27)13-28(17)19(29)7-9-22/h3-6,8,10,16-17H,2,7,11-13H2,1H3,(H,23,30)(H,24,25,26)/t16-,17-/m0/s1" G5D InChIKey InChI 1.03 YUJXKTRZTBIDCL-IRXDYDNUSA-N G5D SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)c1ccc(Nc2nccc(n2)N3C[C@@H]4C[C@H]3CN4C(=O)CC#N)cc1" G5D SMILES CACTVS 3.385 "CCNC(=O)c1ccc(Nc2nccc(n2)N3C[CH]4C[CH]3CN4C(=O)CC#N)cc1" G5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCNC(=O)c1ccc(cc1)Nc2nccc(n2)N3C[C@@H]4C[C@H]3CN4C(=O)CC#N" G5D SMILES "OpenEye OEToolkits" 2.0.6 "CCNC(=O)c1ccc(cc1)Nc2nccc(n2)N3CC4CC3CN4C(=O)CC#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G5D "SYSTEMATIC NAME" ACDLabs 12.01 "4-({4-[(1S,4S)-5-(cyanoacetyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyrimidin-2-yl}amino)-N-ethylbenzamide" G5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[[4-[(1~{S},4~{S})-5-(2-cyanoethanoyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyrimidin-2-yl]amino]-~{N}-ethyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G5D "Create component" 2018-05-04 RCSB G5D "Initial release" 2018-08-29 RCSB #