data_GI9 # _chem_comp.id GI9 _chem_comp.name "tert-butyl (2S)-6-azanyl-2-[[(2R,3S)-3-(1H-indol-3-yl)-2-[[4-(2-oxidanylidene-3H-benzimidazol-1-yl)piperidin-1-yl]carbonylamino]butanoyl]amino]hexanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H47 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms L-054,52 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-10 _chem_comp.pdbx_modified_date 2022-07-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 645.792 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GI9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XN9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GI9 N12 N1 N 0 1 N N N 19.133 48.389 47.076 -1.732 -6.424 1.463 N12 GI9 1 GI9 C13 C1 C 0 1 N N N 17.417 43.719 59.277 -4.885 0.528 0.453 C13 GI9 2 GI9 C14 C2 C 0 1 N N N 17.123 44.969 59.952 -4.518 1.922 0.966 C14 GI9 3 GI9 C15 C3 C 0 1 N N N 16.608 43.535 58.051 -3.632 -0.167 -0.084 C15 GI9 4 GI9 C16 C4 C 0 1 N N N 17.634 46.069 59.073 -3.510 1.790 2.113 C16 GI9 5 GI9 C17 C5 C 0 1 N N N 16.150 44.850 57.460 -2.614 -0.322 1.051 C17 GI9 6 GI9 C18 C6 C 0 1 Y N N 17.902 41.393 60.217 -7.155 0.102 -0.616 C18 GI9 7 GI9 C19 C7 C 0 1 N N N 17.437 46.913 56.672 -1.108 1.472 1.762 C19 GI9 8 GI9 C20 C8 C 0 1 N N R 17.311 47.798 54.413 1.298 1.237 1.461 C20 GI9 9 GI9 C22 C9 C 0 1 N N N 16.083 42.492 61.223 -5.700 1.308 -1.782 C22 GI9 10 GI9 C23 C10 C 0 1 Y N N 17.352 40.518 61.234 -7.752 0.459 -1.827 C23 GI9 11 GI9 C24 C11 C 0 1 Y N N 16.323 49.211 52.641 3.095 2.716 0.603 C24 GI9 12 GI9 C25 C12 C 0 1 Y N N 19.100 40.983 59.370 -7.858 -0.665 0.301 C25 GI9 13 GI9 C26 C13 C 0 1 N N N 18.204 47.080 53.468 2.241 0.067 1.347 C26 GI9 14 GI9 C27 C14 C 0 1 N N N 15.307 49.011 54.871 0.743 3.503 0.567 C27 GI9 15 GI9 C28 C15 C 0 1 Y N N 17.976 39.141 61.476 -9.045 0.045 -2.107 C28 GI9 16 GI9 C29 C16 C 0 1 Y N N 15.597 49.241 51.525 4.157 2.682 -0.405 C29 GI9 17 GI9 C21 C17 C 0 1 N N S 16.050 48.271 53.784 1.662 2.290 0.412 C21 GI9 18 GI9 C30 C18 C 0 1 N N S 20.447 46.894 52.456 2.769 -2.180 0.567 C30 GI9 19 GI9 C31 C19 C 0 1 Y N N 17.294 50.166 52.555 3.641 3.195 1.732 C31 GI9 20 GI9 C32 C20 C 0 1 Y N N 19.735 39.629 59.588 -9.146 -1.073 0.012 C32 GI9 21 GI9 C33 C21 C 0 1 N N N 20.824 47.815 51.326 1.949 -3.401 0.147 C33 GI9 22 GI9 C34 C22 C 0 1 Y N N 16.105 50.212 50.718 5.312 3.172 0.230 C34 GI9 23 GI9 C35 C23 C 0 1 Y N N 19.171 38.700 60.650 -9.737 -0.718 -1.188 C35 GI9 24 GI9 C36 C24 C 0 1 N N N 20.155 47.212 50.109 0.906 -3.711 1.223 C36 GI9 25 GI9 C37 C25 C 0 1 Y N N 14.375 48.388 51.093 4.212 2.287 -1.743 C37 GI9 26 GI9 C38 C26 C 0 1 N N N 21.668 46.501 53.271 3.891 -1.965 -0.416 C38 GI9 27 GI9 C39 C27 C 0 1 N N N 19.244 48.227 49.472 0.171 -5.004 0.864 C39 GI9 28 GI9 C40 C28 C 0 1 Y N N 15.464 50.483 49.333 6.499 3.263 -0.490 C40 GI9 29 GI9 C41 C29 C 0 1 N N N 23.614 45.204 53.613 5.862 -2.649 -1.568 C41 GI9 30 GI9 C42 C30 C 0 1 Y N N 13.751 48.633 49.772 5.389 2.380 -2.430 C42 GI9 31 GI9 C43 C31 C 0 1 Y N N 14.290 49.681 48.901 6.530 2.872 -1.810 C43 GI9 32 GI9 C44 C32 C 0 1 N N N 18.703 47.597 48.202 -0.952 -5.248 1.873 C44 GI9 33 GI9 C45 C33 C 0 1 N N N 24.398 44.075 53.006 5.241 -2.398 -2.944 C45 GI9 34 GI9 C46 C34 C 0 1 N N N 23.175 44.778 54.989 6.809 -3.848 -1.647 C46 GI9 35 GI9 C47 C35 C 0 1 N N N 24.464 46.442 53.767 6.644 -1.410 -1.128 C47 GI9 36 GI9 N06 N2 N 0 1 N N N 17.088 45.976 57.686 -2.364 0.997 1.646 N06 GI9 37 GI9 N07 N3 N 0 1 N N N 17.127 42.593 60.212 -5.874 0.649 -0.622 N07 GI9 38 GI9 N08 N4 N 0 1 N N N 16.902 46.812 55.362 -0.076 0.781 1.239 N08 GI9 39 GI9 N09 N5 N 0 1 N N N 16.235 41.192 61.856 -6.816 1.216 -2.529 N09 GI9 40 GI9 N10 N6 N 0 1 N N N 19.521 47.578 53.309 1.906 -0.997 0.590 N10 GI9 41 GI9 N11 N7 N 0 1 Y N N 17.153 50.777 51.354 4.964 3.475 1.527 N11 GI9 42 GI9 O01 O1 O 0 1 N N N 18.174 47.778 56.904 -0.906 2.523 2.338 O01 GI9 43 GI9 O02 O2 O 0 1 N N N 15.269 43.285 61.492 -4.688 1.903 -2.105 O02 GI9 44 GI9 O03 O3 O 0 1 N N N 17.850 46.135 52.920 3.302 0.083 1.935 O03 GI9 45 GI9 O04 O4 O 0 1 N N N 22.518 45.518 52.808 4.811 -2.924 -0.605 O04 GI9 46 GI9 O05 O5 O 0 1 N N N 21.883 47.040 54.297 3.962 -0.930 -1.035 O05 GI9 47 GI9 H122 H1 H 0 0 N N N 18.783 47.985 46.231 -2.427 -6.657 2.156 H122 GI9 48 GI9 H121 H3 H 0 0 N N N 18.782 49.321 47.170 -2.157 -6.278 0.559 H121 GI9 49 GI9 H131 H4 H 0 0 N N N 18.483 43.691 59.009 -5.305 -0.060 1.268 H131 GI9 50 GI9 H142 H5 H 0 0 N N N 17.628 45.000 60.929 -4.074 2.503 0.157 H142 GI9 51 GI9 H141 H6 H 0 0 N N N 16.038 45.074 60.097 -5.415 2.425 1.327 H141 GI9 52 GI9 H152 H7 H 0 0 N N N 15.722 42.932 58.299 -3.898 -1.150 -0.471 H152 GI9 53 GI9 H151 H8 H 0 0 N N N 17.215 43.004 57.303 -3.197 0.433 -0.883 H151 GI9 54 GI9 H162 H9 H 0 0 N N N 18.731 46.007 59.028 -3.170 2.780 2.416 H162 GI9 55 GI9 H161 H10 H 0 0 N N N 17.339 47.036 59.507 -3.982 1.291 2.959 H161 GI9 56 GI9 H172 H11 H 0 0 N N N 15.181 45.112 57.910 -3.012 -0.996 1.809 H172 GI9 57 GI9 H171 H12 H 0 0 N N N 16.026 44.716 56.375 -1.683 -0.726 0.653 H171 GI9 58 GI9 H201 H13 H 0 0 N N N 17.843 48.631 54.896 1.380 1.674 2.457 H201 GI9 59 GI9 H251 H14 H 0 0 N N N 19.492 41.654 58.620 -7.399 -0.943 1.238 H251 GI9 60 GI9 H271 H15 H 0 0 N N N 15.105 48.327 55.709 1.002 4.253 -0.181 H271 GI9 61 GI9 H272 H16 H 0 0 N N N 15.919 49.854 55.225 -0.293 3.194 0.428 H272 GI9 62 GI9 H273 H17 H 0 0 N N N 14.355 49.391 54.471 0.866 3.927 1.563 H273 GI9 63 GI9 H281 H18 H 0 0 N N N 17.568 38.486 62.231 -9.510 0.320 -3.043 H281 GI9 64 GI9 H211 H19 H 0 0 N N N 15.453 47.416 53.435 1.539 1.866 -0.585 H211 GI9 65 GI9 H301 H20 H 0 0 N N N 19.984 45.986 52.043 3.184 -2.346 1.561 H301 GI9 66 GI9 H311 H21 H 0 0 N N N 18.037 50.393 53.305 3.114 3.339 2.664 H311 GI9 67 GI9 H321 H22 H 0 0 N N N 20.583 39.324 58.993 -9.693 -1.670 0.726 H321 GI9 68 GI9 H331 H23 H 0 0 N N N 21.916 47.844 51.195 1.446 -3.194 -0.798 H331 GI9 69 GI9 H332 H24 H 0 0 N N N 20.450 48.832 51.512 2.611 -4.259 0.024 H332 GI9 70 GI9 H351 H25 H 0 0 N N N 19.618 37.731 60.816 -10.745 -1.040 -1.407 H351 GI9 71 GI9 H361 H26 H 0 0 N N N 19.567 46.334 50.413 1.403 -3.831 2.186 H361 GI9 72 GI9 H362 H27 H 0 0 N N N 20.924 46.905 49.384 0.191 -2.891 1.282 H362 GI9 73 GI9 H371 H28 H 0 0 N N N 13.984 47.624 51.748 3.326 1.910 -2.234 H371 GI9 74 GI9 H392 H29 H 0 0 N N N 19.806 49.141 49.231 -0.252 -4.915 -0.137 H392 GI9 75 GI9 H391 H30 H 0 0 N N N 18.417 48.474 50.154 0.871 -5.839 0.889 H391 GI9 76 GI9 H401 H31 H 0 0 N N N 15.867 51.249 48.687 7.393 3.638 -0.015 H401 GI9 77 GI9 H421 H32 H 0 0 N N N 12.904 48.043 49.453 5.431 2.075 -3.465 H421 GI9 78 GI9 H431 H33 H 0 0 N N N 13.832 49.871 47.941 7.452 2.943 -2.367 H431 GI9 79 GI9 H442 H34 H 0 0 N N N 17.604 47.572 48.240 -1.604 -4.375 1.910 H442 GI9 80 GI9 H441 H35 H 0 0 N N N 19.089 46.572 48.103 -0.523 -5.424 2.859 H441 GI9 81 GI9 H451 H36 H 0 0 N N N 25.258 43.838 53.649 6.031 -2.191 -3.666 H451 GI9 82 GI9 H452 H37 H 0 0 N N N 23.753 43.189 52.914 4.684 -3.280 -3.257 H452 GI9 83 GI9 H453 H38 H 0 0 N N N 24.757 44.372 52.009 4.567 -1.543 -2.887 H453 GI9 84 GI9 H462 H39 H 0 0 N N N 24.059 44.538 55.598 7.251 -4.027 -0.667 H462 GI9 85 GI9 H461 H40 H 0 0 N N N 22.613 45.596 55.464 6.251 -4.731 -1.960 H461 GI9 86 GI9 H463 H41 H 0 0 N N N 22.532 43.889 54.910 7.598 -3.641 -2.369 H463 GI9 87 GI9 H473 H42 H 0 0 N N N 25.334 46.213 54.400 7.434 -1.203 -1.850 H473 GI9 88 GI9 H471 H43 H 0 0 N N N 24.808 46.776 52.777 5.970 -0.555 -1.072 H471 GI9 89 GI9 H472 H44 H 0 0 N N N 23.869 47.239 54.236 7.087 -1.589 -0.148 H472 GI9 90 GI9 H081 H45 H 0 0 N N N 16.266 46.082 55.114 -0.243 -0.019 0.716 H081 GI9 91 GI9 H091 H46 H 0 0 N N N 15.666 40.828 62.593 -6.946 1.605 -3.407 H091 GI9 92 GI9 H101 H47 H 0 0 N N N 19.804 48.407 53.792 1.094 -0.979 0.060 H101 GI9 93 GI9 H111 H48 H 0 0 N N N 17.725 51.517 51.001 5.568 3.834 2.197 H111 GI9 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GI9 N12 C44 SING N N 1 GI9 C44 C39 SING N N 2 GI9 C43 C40 DOUB Y N 3 GI9 C43 C42 SING Y N 4 GI9 C40 C34 SING Y N 5 GI9 C39 C36 SING N N 6 GI9 C42 C37 DOUB Y N 7 GI9 C36 C33 SING N N 8 GI9 C34 N11 SING Y N 9 GI9 C34 C29 DOUB Y N 10 GI9 C37 C29 SING Y N 11 GI9 C33 C30 SING N N 12 GI9 N11 C31 SING Y N 13 GI9 C29 C24 SING Y N 14 GI9 C30 C38 SING N N 15 GI9 C30 N10 SING N N 16 GI9 C31 C24 DOUB Y N 17 GI9 C24 C21 SING N N 18 GI9 O04 C38 SING N N 19 GI9 O04 C41 SING N N 20 GI9 O03 C26 DOUB N N 21 GI9 C45 C41 SING N N 22 GI9 C38 O05 DOUB N N 23 GI9 N10 C26 SING N N 24 GI9 C26 C20 SING N N 25 GI9 C41 C47 SING N N 26 GI9 C41 C46 SING N N 27 GI9 C21 C20 SING N N 28 GI9 C21 C27 SING N N 29 GI9 C20 N08 SING N N 30 GI9 N08 C19 SING N N 31 GI9 C19 O01 DOUB N N 32 GI9 C19 N06 SING N N 33 GI9 C17 N06 SING N N 34 GI9 C17 C15 SING N N 35 GI9 N06 C16 SING N N 36 GI9 C15 C13 SING N N 37 GI9 C16 C14 SING N N 38 GI9 C13 C14 SING N N 39 GI9 C13 N07 SING N N 40 GI9 C25 C32 DOUB Y N 41 GI9 C25 C18 SING Y N 42 GI9 C32 C35 SING Y N 43 GI9 N07 C18 SING N N 44 GI9 N07 C22 SING N N 45 GI9 C18 C23 DOUB Y N 46 GI9 C35 C28 DOUB Y N 47 GI9 C22 O02 DOUB N N 48 GI9 C22 N09 SING N N 49 GI9 C23 C28 SING Y N 50 GI9 C23 N09 SING N N 51 GI9 N12 H122 SING N N 52 GI9 N12 H121 SING N N 53 GI9 C13 H131 SING N N 54 GI9 C14 H142 SING N N 55 GI9 C14 H141 SING N N 56 GI9 C15 H152 SING N N 57 GI9 C15 H151 SING N N 58 GI9 C16 H162 SING N N 59 GI9 C16 H161 SING N N 60 GI9 C17 H172 SING N N 61 GI9 C17 H171 SING N N 62 GI9 C20 H201 SING N N 63 GI9 C25 H251 SING N N 64 GI9 C27 H271 SING N N 65 GI9 C27 H272 SING N N 66 GI9 C27 H273 SING N N 67 GI9 C28 H281 SING N N 68 GI9 C21 H211 SING N N 69 GI9 C30 H301 SING N N 70 GI9 C31 H311 SING N N 71 GI9 C32 H321 SING N N 72 GI9 C33 H331 SING N N 73 GI9 C33 H332 SING N N 74 GI9 C35 H351 SING N N 75 GI9 C36 H361 SING N N 76 GI9 C36 H362 SING N N 77 GI9 C37 H371 SING N N 78 GI9 C39 H392 SING N N 79 GI9 C39 H391 SING N N 80 GI9 C40 H401 SING N N 81 GI9 C42 H421 SING N N 82 GI9 C43 H431 SING N N 83 GI9 C44 H442 SING N N 84 GI9 C44 H441 SING N N 85 GI9 C45 H451 SING N N 86 GI9 C45 H452 SING N N 87 GI9 C45 H453 SING N N 88 GI9 C46 H462 SING N N 89 GI9 C46 H461 SING N N 90 GI9 C46 H463 SING N N 91 GI9 C47 H473 SING N N 92 GI9 C47 H471 SING N N 93 GI9 C47 H472 SING N N 94 GI9 N08 H081 SING N N 95 GI9 N09 H091 SING N N 96 GI9 N10 H101 SING N N 97 GI9 N11 H111 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GI9 InChI InChI 1.03 "InChI=1S/C35H47N7O5/c1-22(25-21-37-26-12-6-5-11-24(25)26)30(31(43)38-28(14-9-10-18-36)32(44)47-35(2,3)4)40-33(45)41-19-16-23(17-20-41)42-29-15-8-7-13-27(29)39-34(42)46/h5-8,11-13,15,21-23,28,30,37H,9-10,14,16-20,36H2,1-4H3,(H,38,43)(H,39,46)(H,40,45)/t22-,28-,30+/m0/s1" GI9 InChIKey InChI 1.03 WFCIXKAZBUIFTR-PKIMSIDOSA-N GI9 SMILES_CANONICAL CACTVS 3.385 "C[C@H]([C@@H](NC(=O)N1CCC(CC1)N2C(=O)Nc3ccccc23)C(=O)N[C@@H](CCCCN)C(=O)OC(C)(C)C)c4c[nH]c5ccccc45" GI9 SMILES CACTVS 3.385 "C[CH]([CH](NC(=O)N1CCC(CC1)N2C(=O)Nc3ccccc23)C(=O)N[CH](CCCCN)C(=O)OC(C)(C)C)c4c[nH]c5ccccc45" GI9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1c[nH]c2c1cccc2)[C@H](C(=O)N[C@@H](CCCCN)C(=O)OC(C)(C)C)NC(=O)N3CCC(CC3)N4c5ccccc5NC4=O" GI9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1c[nH]c2c1cccc2)C(C(=O)NC(CCCCN)C(=O)OC(C)(C)C)NC(=O)N3CCC(CC3)N4c5ccccc5NC4=O" # _pdbx_chem_comp_identifier.comp_id GI9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl (2~{S})-6-azanyl-2-[[(2~{R},3~{S})-3-(1~{H}-indol-3-yl)-2-[[4-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)piperidin-1-yl]carbonylamino]butanoyl]amino]hexanoate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GI9 _pdbx_chem_comp_synonyms.name L-054,52 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GI9 "Create component" 2022-05-10 PDBJ GI9 "Initial release" 2022-08-03 RCSB #