data_GM0 # _chem_comp.id GM0 _chem_comp.name 4-O-phosphono-L-glycero-alpha-D-manno-heptopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H15 O10 P" _chem_comp.mon_nstd_parent_comp_id GMH _chem_comp.pdbx_synonyms ;4-O-phosphono-L-glycero-alpha-D-manno-heptose; 4-O-phosphono-L-glycero-D-manno-heptose; 4-O-phosphono-L-glycero-manno-heptose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-07-05 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.162 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GM0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3V0W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GM0 4-O-phosphono-L-glycero-alpha-D-manno-heptose PDB ? 2 GM0 4-O-phosphono-L-glycero-D-manno-heptose PDB ? 3 GM0 4-O-phosphono-L-glycero-manno-heptose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GM0 P P P 0 1 N N N -13.185 -54.784 18.768 -2.592 -0.070 -0.104 P GM0 1 GM0 C1 C1 C 0 1 N N S -18.296 -53.669 16.555 2.896 -0.943 -0.110 C1 GM0 2 GM0 O1A O1 O 0 1 N N N -13.761 -54.136 20.082 -3.024 -1.397 0.699 O1A GM0 3 GM0 C2 C2 C 0 1 N N S -17.074 -53.093 15.855 1.955 -2.092 0.261 C2 GM0 4 GM0 O2 O2 O 0 1 N N N -16.714 -51.795 16.478 1.736 -2.093 1.673 O2 GM0 5 GM0 C3 C3 C 0 1 N N R -15.790 -54.013 16.166 0.619 -1.902 -0.464 C3 GM0 6 GM0 O3 O3 O 0 1 N N N -14.725 -53.419 15.556 -0.291 -2.930 -0.067 O3 GM0 7 GM0 C4 C4 C 0 1 N N S -15.558 -54.073 17.704 0.039 -0.533 -0.094 C4 GM0 8 GM0 O4 O4 O 0 1 N N N -14.531 -55.131 18.032 -1.171 -0.314 -0.820 O4 GM0 9 GM0 C5 C5 C 0 1 N N R -16.819 -54.694 18.272 1.054 0.556 -0.451 C5 GM0 10 GM0 O5 O5 O 0 1 N N N -17.981 -53.887 18.004 2.284 0.302 0.233 O5 GM0 11 GM0 C6 C6 C 0 1 N N S -16.819 -54.937 19.836 0.508 1.921 -0.029 C6 GM0 12 GM0 O6 O6 O 0 1 N N N -16.250 -53.804 20.531 0.170 1.890 1.360 O6 GM0 13 GM0 C7 C7 C 0 1 N N N -18.222 -55.085 20.346 1.572 2.993 -0.271 C7 GM0 14 GM0 O7 O7 O 0 1 N N N -18.040 -55.837 21.645 1.023 4.282 0.013 O7 GM0 15 GM0 O8 O8 O 0 1 N N N -12.391 -56.230 18.936 -3.704 0.269 -1.218 O8 GM0 16 GM0 O9 O9 O 0 1 N N N -12.142 -54.005 18.187 -2.480 1.064 0.841 O9 GM0 17 GM0 H1 H1 H 0 1 N N N -19.128 -52.954 16.468 3.833 -1.050 0.436 H1 GM0 18 GM0 O1 O10 O 0 1 N Y N -18.650 -54.916 15.950 3.156 -0.975 -1.515 O1 GM0 19 GM0 H2 H2 H 0 1 N N N -17.230 -53.006 14.770 2.401 -3.040 -0.039 H2 GM0 20 GM0 HO2 HO2 H 0 1 N Y N -15.951 -51.435 16.042 2.541 -2.204 2.196 HO2 GM0 21 GM0 H3 H3 H 0 1 N N N -15.979 -55.027 15.784 0.778 -1.952 -1.541 H3 GM0 22 GM0 HO3 HO3 H 0 1 N Y N -13.942 -53.932 15.715 0.016 -3.825 -0.266 HO3 GM0 23 GM0 H4 H4 H 0 1 N N N -15.325 -53.089 18.136 -0.167 -0.503 0.976 H4 GM0 24 GM0 H5 H5 H 0 1 N N N -16.953 -55.676 17.795 1.229 0.551 -1.527 H5 GM0 25 GM0 H6 H6 H 0 1 N N N -16.246 -55.851 20.052 -0.382 2.153 -0.614 H6 GM0 26 GM0 HO6 HO6 H 0 1 N Y N -16.259 -53.969 21.467 0.916 1.689 1.941 HO6 GM0 27 GM0 H71 H7 H 0 1 N N N -18.684 -54.102 20.521 2.427 2.811 0.380 H71 GM0 28 GM0 H72 H7A H 0 1 N N N -18.840 -55.660 19.640 1.894 2.957 -1.312 H72 GM0 29 GM0 HO7 HO7 H 0 1 N Y N -18.887 -55.981 22.050 1.644 5.012 -0.120 HO7 GM0 30 GM0 H13 H13 H 0 1 N N N -13.304 -53.323 20.261 -3.117 -2.181 0.141 H13 GM0 31 GM0 H14 H14 H 0 1 N N N -11.502 -56.143 18.613 -4.587 0.428 -0.857 H14 GM0 32 GM0 HO1 H15 H 0 1 N Y N -19.413 -55.275 16.387 3.747 -0.273 -1.821 HO1 GM0 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GM0 P O1A SING N N 1 GM0 P O4 SING N N 2 GM0 P O8 SING N N 3 GM0 P O9 DOUB N N 4 GM0 C1 C2 SING N N 5 GM0 C1 O5 SING N N 6 GM0 C1 H1 SING N N 7 GM0 C1 O1 SING N N 8 GM0 C2 O2 SING N N 9 GM0 C2 C3 SING N N 10 GM0 C2 H2 SING N N 11 GM0 O2 HO2 SING N N 12 GM0 C3 O3 SING N N 13 GM0 C3 C4 SING N N 14 GM0 C3 H3 SING N N 15 GM0 O3 HO3 SING N N 16 GM0 C4 O4 SING N N 17 GM0 C4 C5 SING N N 18 GM0 C4 H4 SING N N 19 GM0 C5 O5 SING N N 20 GM0 C5 C6 SING N N 21 GM0 C5 H5 SING N N 22 GM0 C6 O6 SING N N 23 GM0 C6 C7 SING N N 24 GM0 C6 H6 SING N N 25 GM0 O6 HO6 SING N N 26 GM0 C7 O7 SING N N 27 GM0 C7 H71 SING N N 28 GM0 C7 H72 SING N N 29 GM0 O7 HO7 SING N N 30 GM0 O1A H13 SING N N 31 GM0 O8 H14 SING N N 32 GM0 O1 HO1 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GM0 SMILES ACDLabs 12.01 "O=P(O)(O)OC1C(OC(O)C(O)C1O)C(O)CO" GM0 InChI InChI 1.03 "InChI=1S/C7H15O10P/c8-1-2(9)5-6(17-18(13,14)15)3(10)4(11)7(12)16-5/h2-12H,1H2,(H2,13,14,15)/t2-,3+,4-,5+,6-,7-/m0/s1" GM0 InChIKey InChI 1.03 JDFMKMOMBHLESC-OPTWKVKHSA-N GM0 SMILES_CANONICAL CACTVS 3.370 "OC[C@H](O)[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O[P](O)(O)=O" GM0 SMILES CACTVS 3.370 "OC[CH](O)[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O[P](O)(O)=O" GM0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(C(C1C(C(C(C(O1)O)O)O)OP(=O)(O)O)O)O" GM0 SMILES "OpenEye OEToolkits" 1.7.6 "C(C(C1C(C(C(C(O1)O)O)O)OP(=O)(O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GM0 "SYSTEMATIC NAME" ACDLabs 12.01 4-O-phosphono-L-glycero-alpha-D-manno-heptopyranose GM0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[2-[1,2-bis(oxidanyl)ethyl]-4,5,6-tris(oxidanyl)oxan-3-yl] dihydrogen phosphate" # _pdbx_chem_comp_related.comp_id GM0 _pdbx_chem_comp_related.related_comp_id GMH _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 GM0 C1 GMH C1 "Carbohydrate core" 2 GM0 C2 GMH C2 "Carbohydrate core" 3 GM0 C3 GMH C3 "Carbohydrate core" 4 GM0 C4 GMH C4 "Carbohydrate core" 5 GM0 C5 GMH C5 "Carbohydrate core" 6 GM0 C6 GMH C6 "Carbohydrate core" 7 GM0 C7 GMH C7 "Carbohydrate core" 8 GM0 O1 GMH O1 "Carbohydrate core" 9 GM0 O2 GMH O2 "Carbohydrate core" 10 GM0 O3 GMH O3 "Carbohydrate core" 11 GM0 O4 GMH O4 "Carbohydrate core" 12 GM0 O5 GMH O5 "Carbohydrate core" 13 GM0 O6 GMH O6 "Carbohydrate core" 14 GM0 O7 GMH O7 "Carbohydrate core" 15 GM0 H1 GMH H1 "Carbohydrate core" 16 GM0 HO1 GMH HO1 "Carbohydrate core" 17 GM0 H2 GMH H2 "Carbohydrate core" 18 GM0 H3 GMH H3 "Carbohydrate core" 19 GM0 H4 GMH H4 "Carbohydrate core" 20 GM0 H5 GMH H5 "Carbohydrate core" 21 GM0 H6 GMH H6 "Carbohydrate core" 22 GM0 H71 GMH H71 "Carbohydrate core" 23 GM0 H72 GMH H72 "Carbohydrate core" 24 GM0 HO2 GMH HO2 "Carbohydrate core" 25 GM0 HO3 GMH HO3 "Carbohydrate core" 26 GM0 HO6 GMH HO6 "Carbohydrate core" 27 GM0 HO7 GMH HO7 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GM0 "CARBOHYDRATE ISOMER" D PDB ? GM0 "CARBOHYDRATE RING" pyranose PDB ? GM0 "CARBOHYDRATE ANOMER" alpha PDB ? GM0 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GM0 "Create component" 2012-07-05 RCSB GM0 "Initial release" 2012-11-30 RCSB GM0 "Other modification" 2020-07-03 RCSB GM0 "Modify parent residue" 2020-07-17 RCSB GM0 "Modify synonyms" 2020-07-17 RCSB GM0 "Modify internal type" 2020-07-17 RCSB GM0 "Modify linking type" 2020-07-17 RCSB GM0 "Modify atom id" 2020-07-17 RCSB GM0 "Modify component atom id" 2020-07-17 RCSB GM0 "Modify leaving atom flag" 2020-07-17 RCSB ##