data_GRD # _chem_comp.id GRD _chem_comp.name "benzyl (S)-1-((2S,3S)-1-(3-(6-amino-9H-purin-9-yl)propylamino)-2-hydroxy-1-oxopentan-3-ylamino)-4-methyl-1-oxopentan-2-ylcarbamate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H38 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-12-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 554.641 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GRD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2R9C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GRD C4 C4 C 0 1 Y N N -2.898 4.054 23.243 7.058 -1.743 -0.164 C4 GRD 1 GRD C5 C5 C 0 1 Y N N -2.165 3.178 22.466 7.745 -2.521 0.784 C5 GRD 2 GRD C6 C6 C 0 1 Y N N -1.481 2.153 23.102 7.815 -3.909 0.577 C6 GRD 3 GRD C8 C8 C 0 1 Y N N -3.113 4.614 21.154 7.854 -0.457 1.441 C8 GRD 4 GRD N1 N1 N 0 1 Y N N -1.524 2.054 24.464 7.230 -4.419 -0.502 N1 GRD 5 GRD N3 N3 N 0 1 Y N N -2.922 3.935 24.610 6.504 -2.343 -1.213 N3 GRD 6 GRD CAN CAN C 0 1 Y N N -18.820 11.112 19.055 -8.858 -4.428 0.868 CAN GRD 7 GRD CAL CAL C 0 1 Y N N -18.355 12.417 18.831 -9.132 -4.925 -0.392 CAL GRD 8 GRD CAU CAU C 0 1 N N N -6.542 5.424 21.998 4.533 2.136 -0.651 CAU GRD 9 GRD CBM CBM C 0 1 Y N N -17.237 10.879 20.878 -8.105 -2.374 -0.105 CBM GRD 10 GRD CAQ CAQ C 0 1 Y N N -18.260 10.344 20.084 -8.344 -3.152 1.012 CAQ GRD 11 GRD CAA CAA C 0 1 N N N -11.467 8.501 23.062 -0.585 1.076 -2.872 CAA GRD 12 GRD OAH OAH O 0 1 N N N -13.642 6.919 20.729 -1.542 0.227 -0.548 OAH GRD 13 GRD OAG OAG O 0 1 N N N -15.299 8.146 23.387 -6.055 1.164 0.284 OAG GRD 14 GRD CAS CAS C 0 1 N N N -10.674 7.216 23.090 0.130 2.326 -2.357 CAS GRD 15 GRD CAT CAT C 0 1 N N N -5.721 5.751 23.223 5.123 0.904 0.038 CAT GRD 16 GRD N7 N7 N 0 1 Y N N -2.315 3.543 21.156 8.206 -1.675 1.736 N7 GRD 17 GRD N9 N9 N 0 1 Y N N -3.472 4.935 22.406 7.149 -0.446 0.275 N9 GRD 18 GRD C2 C2 C 0 1 Y N N -2.227 2.936 25.211 6.595 -3.647 -1.365 C2 GRD 19 GRD N6 N6 N 0 1 N N N -0.776 1.254 22.374 8.478 -4.726 1.476 N6 GRD 20 GRD OAI OAI O 0 1 N N N -8.808 5.735 20.354 2.911 4.113 -1.503 OAI GRD 21 GRD CBK CBK C 0 1 N N N -8.942 5.317 21.493 2.408 3.325 -0.730 CBK GRD 22 GRD N1C N1C N 0 1 N N N -7.941 5.138 22.345 3.135 2.299 -0.245 N1C GRD 23 GRD CAV CAV C 0 1 N N N -4.300 6.081 22.782 6.583 0.734 -0.385 CAV GRD 24 GRD CBU CBU C 0 1 N N S -10.335 4.990 21.951 0.969 3.493 -0.313 CBU GRD 25 GRD OAJ OAJ O 0 1 N N N -10.288 4.209 23.166 0.452 4.706 -0.864 OAJ GRD 26 GRD CBS CBS C 0 1 N N S -11.177 6.252 21.991 0.147 2.309 -0.827 CBS GRD 27 GRD N1E N1E N 0 1 N N N -12.535 5.798 22.356 -1.224 2.411 -0.322 N1E GRD 28 GRD CBJ CBJ C 0 1 N N N -13.639 6.174 21.711 -1.980 1.302 -0.196 CBJ GRD 29 GRD CBR CBR C 0 1 N N S -14.945 5.643 22.261 -3.368 1.398 0.381 CBR GRD 30 GRD CAY CAY C 0 1 N N N -15.235 4.309 21.568 -3.278 1.645 1.888 CAY GRD 31 GRD CBP CBP C 0 1 N N N -16.541 3.645 22.005 -2.558 2.970 2.145 CBP GRD 32 GRD CAB CAB C 0 1 N N N -16.716 2.328 21.250 -3.415 4.126 1.624 CAB GRD 33 GRD CAC CAC C 0 1 N N N -16.564 3.414 23.515 -2.329 3.143 3.648 CAC GRD 34 GRD N1D N1D N 0 1 N N N -16.012 6.577 21.935 -4.087 0.145 0.134 N1D GRD 35 GRD CBI CBI C 0 1 N N N -16.082 7.786 22.524 -5.435 0.127 0.152 CBI GRD 36 GRD OBF OBF O 0 1 N N N -17.135 8.702 22.159 -6.094 -1.039 0.023 OBF GRD 37 GRD CAW CAW C 0 1 N N N -16.645 10.058 21.962 -7.545 -0.983 0.052 CAW GRD 38 GRD CAP CAP C 0 1 Y N N -16.771 12.179 20.649 -8.379 -2.871 -1.365 CAP GRD 39 GRD CAM CAM C 0 1 Y N N -17.330 12.952 19.621 -8.893 -4.146 -1.509 CAM GRD 40 GRD H8 H8 H 0 1 N N N -3.426 5.147 20.268 8.090 0.416 2.031 H8 GRD 41 GRD HAN HAN H 0 1 N N N -19.605 10.702 18.437 -9.048 -5.034 1.741 HAN GRD 42 GRD HAL HAL H 0 1 N N N -18.791 13.013 18.043 -9.533 -5.921 -0.504 HAL GRD 43 GRD HAU HAU H 0 1 N N N -6.516 6.285 21.314 5.100 3.021 -0.363 HAU GRD 44 GRD HAUA HAUA H 0 0 N N N -6.114 4.528 21.524 4.585 2.007 -1.732 HAUA GRD 45 GRD HAQ HAQ H 0 1 N N N -18.616 9.341 20.265 -8.129 -2.764 1.997 HAQ GRD 46 GRD HAA HAA H 0 1 N N N -11.660 8.836 24.092 -0.598 1.088 -3.962 HAA GRD 47 GRD HAAA HAAA H 0 0 N N N -10.895 9.273 22.526 -0.058 0.187 -2.525 HAAA GRD 48 GRD HAAB HAAB H 0 0 N N N -12.424 8.330 22.547 -1.609 1.061 -2.497 HAAB GRD 49 GRD HAS HAS H 0 1 N N N -9.612 7.442 22.914 1.153 2.340 -2.732 HAS GRD 50 GRD HASA HASA H 0 0 N N N -10.801 6.738 24.072 -0.397 3.215 -2.704 HASA GRD 51 GRD HAT HAT H 0 1 N N N -6.159 6.615 23.744 5.071 1.033 1.120 HAT GRD 52 GRD HATA HATA H 0 0 N N N -5.711 4.891 23.909 4.555 0.019 -0.250 HATA GRD 53 GRD H2 H2 H 0 1 N N N -2.235 2.845 26.287 6.134 -4.102 -2.229 H2 GRD 54 GRD HN6 HN6 H 0 1 N N N -0.602 1.626 21.462 8.901 -4.342 2.259 HN6 GRD 55 GRD HN6A HN6A H 0 0 N N N 0.095 1.066 22.829 8.519 -5.683 1.322 HN6A GRD 56 GRD HN1C HN1C H 0 0 N N N -8.147 4.794 23.261 2.732 1.669 0.373 HN1C GRD 57 GRD HAV HAV H 0 1 N N N -4.371 6.739 21.904 6.635 0.605 -1.466 HAV GRD 58 GRD HAVA HAVA H 0 0 N N N -3.809 6.538 23.654 7.151 1.618 -0.097 HAVA GRD 59 GRD HBU HBU H 0 1 N N N -10.853 4.339 21.232 0.909 3.533 0.774 HBU GRD 60 GRD HOAJ HOAJ H 0 0 N N N -10.278 3.284 22.948 0.475 4.741 -1.830 HOAJ GRD 61 GRD HBS HBS H 0 1 N N N -11.137 6.784 21.029 0.595 1.378 -0.479 HBS GRD 62 GRD HN1E HN1E H 0 0 N N N -12.631 5.173 23.131 -1.588 3.276 -0.077 HN1E GRD 63 GRD HBR HBR H 0 1 N N N -14.882 5.516 23.352 -3.902 2.222 -0.091 HBR GRD 64 GRD HAY HAY H 0 1 N N N -15.296 4.496 20.486 -4.282 1.689 2.310 HAY GRD 65 GRD HAYA HAYA H 0 0 N N N -14.421 3.623 21.845 -2.722 0.833 2.357 HAYA GRD 66 GRD HBP HBP H 0 1 N N N -17.380 4.315 21.764 -1.598 2.968 1.630 HBP GRD 67 GRD HAB HAB H 0 1 N N N -16.758 2.527 20.169 -3.640 3.964 0.570 HAB GRD 68 GRD HABA HABA H 0 0 N N N -15.866 1.665 21.468 -4.344 4.173 2.191 HABA GRD 69 GRD HABB HABB H 0 0 N N N -17.650 1.844 21.570 -2.870 5.062 1.739 HABB GRD 70 GRD HAC HAC H 0 1 N N N -16.570 2.333 23.721 -1.719 2.320 4.020 HAC GRD 71 GRD HACA HACA H 0 0 N N N -15.671 3.869 23.969 -1.816 4.087 3.832 HACA GRD 72 GRD HACB HACB H 0 0 N N N -17.468 3.873 23.942 -3.289 3.145 4.164 HACB GRD 73 GRD HN1D HN1D H 0 0 N N N -16.705 6.317 21.262 -3.594 -0.671 -0.043 HN1D GRD 74 GRD HAW HAW H 0 1 N N N -15.571 9.973 21.739 -7.900 -0.355 -0.765 HAW GRD 75 GRD HAWA HAWA H 0 0 N N N -16.923 10.585 22.886 -7.874 -0.564 1.002 HAWA GRD 76 GRD HAP HAP H 0 1 N N N -15.982 12.586 21.263 -8.193 -2.262 -2.238 HAP GRD 77 GRD HAM HAM H 0 1 N N N -16.972 13.955 19.440 -9.106 -4.534 -2.494 HAM GRD 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GRD C4 C5 DOUB Y N 1 GRD C4 N3 SING Y N 2 GRD C4 N9 SING Y N 3 GRD C5 C6 SING Y N 4 GRD C5 N7 SING Y N 5 GRD C6 N1 DOUB Y N 6 GRD C6 N6 SING N N 7 GRD C8 N7 DOUB Y N 8 GRD C8 N9 SING Y N 9 GRD N1 C2 SING Y N 10 GRD N3 C2 DOUB Y N 11 GRD CAN CAL DOUB Y N 12 GRD CAN CAQ SING Y N 13 GRD CAL CAM SING Y N 14 GRD CAU CAT SING N N 15 GRD CAU N1C SING N N 16 GRD CBM CAQ DOUB Y N 17 GRD CBM CAW SING N N 18 GRD CBM CAP SING Y N 19 GRD CAA CAS SING N N 20 GRD OAH CBJ DOUB N N 21 GRD OAG CBI DOUB N N 22 GRD CAS CBS SING N N 23 GRD CAT CAV SING N N 24 GRD N9 CAV SING N N 25 GRD OAI CBK DOUB N N 26 GRD CBK N1C SING N N 27 GRD CBK CBU SING N N 28 GRD CBU OAJ SING N N 29 GRD CBU CBS SING N N 30 GRD CBS N1E SING N N 31 GRD N1E CBJ SING N N 32 GRD CBJ CBR SING N N 33 GRD CBR CAY SING N N 34 GRD CBR N1D SING N N 35 GRD CAY CBP SING N N 36 GRD CBP CAB SING N N 37 GRD CBP CAC SING N N 38 GRD N1D CBI SING N N 39 GRD CBI OBF SING N N 40 GRD OBF CAW SING N N 41 GRD CAP CAM DOUB Y N 42 GRD C8 H8 SING N N 43 GRD CAN HAN SING N N 44 GRD CAL HAL SING N N 45 GRD CAU HAU SING N N 46 GRD CAU HAUA SING N N 47 GRD CAQ HAQ SING N N 48 GRD CAA HAA SING N N 49 GRD CAA HAAA SING N N 50 GRD CAA HAAB SING N N 51 GRD CAS HAS SING N N 52 GRD CAS HASA SING N N 53 GRD CAT HAT SING N N 54 GRD CAT HATA SING N N 55 GRD C2 H2 SING N N 56 GRD N6 HN6 SING N N 57 GRD N6 HN6A SING N N 58 GRD N1C HN1C SING N N 59 GRD CAV HAV SING N N 60 GRD CAV HAVA SING N N 61 GRD CBU HBU SING N N 62 GRD OAJ HOAJ SING N N 63 GRD CBS HBS SING N N 64 GRD N1E HN1E SING N N 65 GRD CBR HBR SING N N 66 GRD CAY HAY SING N N 67 GRD CAY HAYA SING N N 68 GRD CBP HBP SING N N 69 GRD CAB HAB SING N N 70 GRD CAB HABA SING N N 71 GRD CAB HABB SING N N 72 GRD CAC HAC SING N N 73 GRD CAC HACA SING N N 74 GRD CAC HACB SING N N 75 GRD N1D HN1D SING N N 76 GRD CAW HAW SING N N 77 GRD CAW HAWA SING N N 78 GRD CAP HAP SING N N 79 GRD CAM HAM SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GRD SMILES ACDLabs 10.04 "O=C(OCc1ccccc1)NC(C(=O)NC(CC)C(O)C(=O)NCCCn2c3ncnc(c3nc2)N)CC(C)C" GRD SMILES_CANONICAL CACTVS 3.341 "CC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1)[C@H](O)C(=O)NCCCn2cnc3c(N)ncnc23" GRD SMILES CACTVS 3.341 "CC[CH](NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1)[CH](O)C(=O)NCCCn2cnc3c(N)ncnc23" GRD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[C@@H]([C@@H](C(=O)NCCCn1cnc2c1ncnc2N)O)NC(=O)[C@H](CC(C)C)NC(=O)OCc3ccccc3" GRD SMILES "OpenEye OEToolkits" 1.5.0 "CCC(C(C(=O)NCCCn1cnc2c1ncnc2N)O)NC(=O)C(CC(C)C)NC(=O)OCc3ccccc3" GRD InChI InChI 1.03 "InChI=1S/C27H38N8O5/c1-4-19(22(36)26(38)29-11-8-12-35-16-32-21-23(28)30-15-31-24(21)35)33-25(37)20(13-17(2)3)34-27(39)40-14-18-9-6-5-7-10-18/h5-7,9-10,15-17,19-20,22,36H,4,8,11-14H2,1-3H3,(H,29,38)(H,33,37)(H,34,39)(H2,28,30,31)/t19-,20-,22-/m0/s1" GRD InChIKey InChI 1.03 JADHYPXMRTWESB-ONTIZHBOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GRD "SYSTEMATIC NAME" ACDLabs 10.04 "benzyl [(1S)-1-{[(1S,2S)-3-{[3-(6-amino-9H-purin-9-yl)propyl]amino}-1-ethyl-2-hydroxy-3-oxopropyl]carbamoyl}-3-methylbutyl]carbamate (non-preferred name)" GRD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "phenylmethyl N-[(2S)-1-[[(2S,3S)-1-[3-(6-aminopurin-9-yl)propylamino]-2-hydroxy-1-oxo-pentan-3-yl]amino]-4-methyl-1-oxo-pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GRD "Create component" 2007-12-08 RCSB GRD "Modify aromatic_flag" 2011-06-04 RCSB GRD "Modify descriptor" 2011-06-04 RCSB #