data_GRX # _chem_comp.id GRX _chem_comp.name "(1R)-1,5-anhydro-1-[(S)-fluoro(phosphono)methyl]-D-glucitol" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 F O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(S)-1-beta-phosphonofluoromethylene-1-deoxy-D-glucopyranose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-09-09 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.153 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GRX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4C4S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GRX _pdbx_chem_comp_synonyms.name "(S)-1-beta-phosphonofluoromethylene-1-deoxy-D-glucopyranose" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GRX O1P O1P O 0 1 N N N -18.146 -8.698 -12.289 -2.234 -1.653 0.469 O1P GRX 1 GRX P P P 0 1 N N N -16.866 -9.136 -11.732 -2.641 -0.311 -0.004 P GRX 2 GRX O2P O2P O 0 1 N N N -16.537 -8.645 -10.369 -2.766 -0.323 -1.609 O2P GRX 3 GRX O3P O3P O 0 1 N N N -16.541 -10.570 -11.941 -4.063 0.077 0.642 O3P GRX 4 GRX C7 C7 C 0 1 N N S -15.668 -8.290 -12.815 -1.390 0.915 0.499 C7 GRX 5 GRX F1 F1 F 0 1 N N N -15.796 -8.782 -14.153 -1.775 2.184 0.052 F1 GRX 6 GRX C1 C1 C 0 1 N N R -14.190 -8.406 -12.420 -0.038 0.547 -0.115 C1 GRX 7 GRX O5 O5 O 0 1 N N N -13.583 -7.175 -12.681 0.355 -0.749 0.341 O5 GRX 8 GRX C5 C5 C 0 1 N N R -12.192 -7.107 -12.289 1.599 -1.204 -0.195 C5 GRX 9 GRX C6 C6 C 0 1 N N N -11.725 -5.683 -12.582 1.902 -2.606 0.338 C6 GRX 10 GRX O6 O6 O 0 1 N N N -12.553 -4.739 -11.824 0.922 -3.524 -0.150 O6 GRX 11 GRX C4 C4 C 0 1 N N S -11.370 -8.140 -13.017 2.716 -0.245 0.225 C4 GRX 12 GRX O4 O4 O 0 1 N N N -10.013 -7.995 -12.565 3.951 -0.666 -0.358 O4 GRX 13 GRX C3 C3 C 0 1 N N S -11.930 -9.490 -12.630 2.375 1.167 -0.261 C3 GRX 14 GRX O3 O3 O 0 1 N N N -11.141 -10.496 -13.329 3.376 2.082 0.190 O3 GRX 15 GRX C2 C2 C 0 1 N N R -13.375 -9.617 -13.021 1.013 1.576 0.308 C2 GRX 16 GRX O2 O2 O 0 1 N N N -13.907 -10.916 -12.661 0.652 2.863 -0.197 O2 GRX 17 GRX H2P H2P H 0 1 N N N -17.243 -8.094 -10.051 -3.030 0.526 -1.989 H2P GRX 18 GRX H3P H3P H 0 1 N N N -17.245 -10.988 -12.422 -4.778 -0.534 0.417 H3P GRX 19 GRX H7 H7 H 0 1 N N N -15.950 -7.227 -12.784 -1.305 0.923 1.586 H7 GRX 20 GRX H1 H1 H 0 1 N N N -14.179 -8.557 -11.330 -0.122 0.539 -1.202 H1 GRX 21 GRX H2 H2 H 0 1 N N N -13.429 -9.518 -14.115 1.069 1.613 1.396 H2 GRX 22 GRX H5 H5 H 0 1 N N N -12.106 -7.286 -11.207 1.536 -1.235 -1.283 H5 GRX 23 GRX H61C H61C H 0 0 N N N -10.672 -5.572 -12.283 2.891 -2.917 0.000 H61C GRX 24 GRX H62C H62C H 0 0 N N N -11.824 -5.477 -13.658 1.878 -2.593 1.428 H62C GRX 25 GRX H4 H4 H 0 1 N N N -11.448 -7.993 -14.104 2.807 -0.246 1.311 H4 GRX 26 GRX HA HA H 0 1 N N N -9.463 -8.633 -13.004 4.226 -1.556 -0.097 HA GRX 27 GRX H3 H3 H 0 1 N N N -11.833 -9.625 -11.543 2.335 1.178 -1.350 H3 GRX 28 GRX HB HB H 0 1 N N N -11.465 -11.362 -13.110 4.266 1.879 -0.127 HB GRX 29 GRX HC HC H 0 1 N N N -13.373 -11.597 -13.053 1.275 3.565 0.034 HC GRX 30 GRX H6 H6 H 0 1 N N N -12.266 -3.851 -12.003 1.052 -4.434 0.149 H6 GRX 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GRX O1P P DOUB N N 1 GRX P O2P SING N N 2 GRX P O3P SING N N 3 GRX P C7 SING N N 4 GRX C7 F1 SING N N 5 GRX C7 C1 SING N N 6 GRX C1 O5 SING N N 7 GRX C1 C2 SING N N 8 GRX O5 C5 SING N N 9 GRX C5 C6 SING N N 10 GRX C5 C4 SING N N 11 GRX C6 O6 SING N N 12 GRX C4 O4 SING N N 13 GRX C4 C3 SING N N 14 GRX C3 O3 SING N N 15 GRX C3 C2 SING N N 16 GRX C2 O2 SING N N 17 GRX O6 H6 SING N N 18 GRX O2P H2P SING N N 19 GRX O3P H3P SING N N 20 GRX C7 H7 SING N N 21 GRX C1 H1 SING N N 22 GRX C2 H2 SING N N 23 GRX C5 H5 SING N N 24 GRX C6 H61C SING N N 25 GRX C6 H62C SING N N 26 GRX C4 H4 SING N N 27 GRX O4 HA SING N N 28 GRX C3 H3 SING N N 29 GRX O3 HB SING N N 30 GRX O2 HC SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GRX SMILES ACDLabs 12.01 "O=P(O)(O)C(F)C1OC(C(O)C(O)C1O)CO" GRX InChI InChI 1.03 "InChI=1S/C7H14FO8P/c8-7(17(13,14)15)6-5(12)4(11)3(10)2(1-9)16-6/h2-7,9-12H,1H2,(H2,13,14,15)/t2-,3-,4+,5-,6-,7+/m1/s1" GRX InChIKey InChI 1.03 BUPRWODHUABASJ-GEGSFZHJSA-N GRX SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)[C@@H](F)[P](O)(O)=O" GRX SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)[CH](F)[P](O)(O)=O" GRX SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)[C@@H](F)P(=O)(O)O)O)O)O)O" GRX SMILES "OpenEye OEToolkits" 1.9.2 "C(C1C(C(C(C(O1)C(F)P(=O)(O)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GRX "SYSTEMATIC NAME" ACDLabs 12.01 "(1R)-1,5-anhydro-1-[(S)-fluoro(phosphono)methyl]-D-glucitol" GRX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(S)-fluoranyl-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]methyl]phosphonic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GRX "CARBOHYDRATE ISOMER" D PDB ? GRX "CARBOHYDRATE RING" pyranose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GRX "Create component" 2013-09-09 EBI GRX "Initial release" 2014-07-16 RCSB GRX "Modify descriptor" 2014-09-05 RCSB GRX "Other modification" 2020-07-03 RCSB GRX "Modify name" 2020-07-17 RCSB GRX "Modify synonyms" 2020-07-17 RCSB GRX "Modify internal type" 2020-07-17 RCSB GRX "Modify linking type" 2020-07-17 RCSB ##