data_GY9 # _chem_comp.id GY9 _chem_comp.name "2-{(2S)-1-[(2-chlorophenoxy)acetyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H25 Cl N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SRI-29835 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-22 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.942 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GY9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W73 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GY9 C1 C1 C 0 1 N N N 128.255 102.979 287.309 0.665 3.154 0.327 C1 GY9 1 GY9 C10 C2 C 0 1 N N N 127.716 101.293 284.624 3.113 1.321 0.107 C10 GY9 2 GY9 C11 C3 C 0 1 N N N 127.161 102.660 284.307 4.007 0.293 -0.536 C11 GY9 3 GY9 C12 C4 C 0 1 N N N 132.934 103.059 284.523 -2.666 -1.928 0.499 C12 GY9 4 GY9 C13 C5 C 0 1 N N N 132.463 103.130 283.093 -4.176 -2.169 0.560 C13 GY9 5 GY9 C14 C6 C 0 1 Y N N 123.880 106.140 286.198 6.121 -4.123 -1.207 C14 GY9 6 GY9 C15 C7 C 0 1 Y N N 125.127 106.257 285.657 5.419 -4.239 -0.022 C15 GY9 7 GY9 C16 C8 C 0 1 Y N N 125.780 105.151 285.129 4.723 -3.154 0.478 C16 GY9 8 GY9 C17 C9 C 0 1 Y N N 125.166 103.884 285.135 4.732 -1.948 -0.210 C17 GY9 9 GY9 C18 C10 C 0 1 Y N N 123.895 103.803 285.697 5.438 -1.836 -1.399 C18 GY9 10 GY9 C19 C11 C 0 1 Y N N 123.261 104.917 286.221 6.130 -2.923 -1.895 C19 GY9 11 GY9 C2 C12 C 0 1 N N N 130.212 104.134 286.905 -0.857 1.415 0.491 C2 GY9 12 GY9 C20 C13 C 0 1 Y N N 129.254 102.108 279.428 -8.901 -1.838 -0.845 C20 GY9 13 GY9 C21 C14 C 0 1 Y N N 129.208 101.024 280.272 -8.169 -1.442 -1.950 C21 GY9 14 GY9 C22 C15 C 0 1 Y N N 129.972 100.995 281.427 -6.790 -1.393 -1.885 C22 GY9 15 GY9 C23 C16 C 0 1 Y N N 130.792 102.071 281.729 -6.140 -1.741 -0.710 C23 GY9 16 GY9 C24 C17 C 0 1 Y N N 130.837 103.169 280.883 -6.877 -2.137 0.397 C24 GY9 17 GY9 C25 C18 C 0 1 Y N N 130.066 103.174 279.732 -8.255 -2.184 0.327 C25 GY9 18 GY9 C3 C19 C 0 1 N N N 129.822 105.168 287.703 -1.854 2.290 0.891 C3 GY9 19 GY9 C4 C20 C 0 1 N N N 128.587 105.115 288.348 -1.511 3.714 0.998 C4 GY9 20 GY9 C5 C21 C 0 1 N N N 131.540 104.162 286.198 -1.141 -0.032 0.365 C5 GY9 21 GY9 C6 C22 C 0 1 N N N 128.778 99.945 287.822 3.276 4.366 -1.941 C6 GY9 22 GY9 C7 C23 C 0 1 N N N 127.502 100.688 288.184 2.042 4.704 -1.064 C7 GY9 23 GY9 C8 C24 C 0 1 N N S 127.418 101.740 287.065 2.070 3.599 0.014 C8 GY9 24 GY9 C9 C25 C 0 1 N N N 128.592 99.729 286.339 3.269 2.817 -1.903 C9 GY9 25 GY9 N1 N1 N 0 1 N N N 129.442 103.054 286.708 0.373 1.891 0.223 N1 GY9 26 GY9 N2 N2 N 0 1 N N N 127.821 103.993 288.118 -0.243 4.083 0.711 N2 GY9 27 GY9 N3 N3 N 0 1 N N N 131.789 103.108 285.417 -2.401 -0.487 0.513 N3 GY9 28 GY9 N4 N4 N 0 1 N N N 127.893 100.950 285.912 2.841 2.474 -0.535 N4 GY9 29 GY9 O1 O1 O 0 1 N N N 130.566 106.261 287.924 -3.104 1.847 1.174 O1 GY9 30 GY9 O2 O2 O 0 1 N N N 128.157 106.006 289.095 -2.341 4.537 1.345 O2 GY9 31 GY9 O3 O3 O 0 1 N N N 132.319 105.106 286.321 -0.238 -0.810 0.127 O3 GY9 32 GY9 O4 O4 O 0 1 N N N 125.777 102.766 284.620 4.049 -0.880 0.279 O4 GY9 33 GY9 O5 O5 O 0 1 N N N 128.024 100.514 283.728 2.637 1.110 1.203 O5 GY9 34 GY9 O6 O6 O 0 1 N N N 131.547 102.054 282.871 -4.783 -1.693 -0.643 O6 GY9 35 GY9 CL1 CL1 CL 0 0 N N N 127.358 105.450 284.466 3.841 -3.299 1.966 CL1 GY9 36 GY9 H1 H1 H 0 1 N N N 127.297 102.857 283.233 3.617 0.037 -1.521 H1 GY9 37 GY9 H2 H2 H 0 1 N N N 127.714 103.411 284.891 5.013 0.700 -0.638 H2 GY9 38 GY9 H3 H3 H 0 1 N N N 133.482 102.119 284.682 -2.189 -2.393 1.361 H3 GY9 39 GY9 H4 H4 H 0 1 N N N 133.598 103.910 284.732 -2.266 -2.362 -0.417 H4 GY9 40 GY9 H5 H5 H 0 1 N N N 133.322 103.034 282.413 -4.369 -3.236 0.667 H5 GY9 41 GY9 H6 H6 H 0 1 N N N 131.959 104.091 282.914 -4.595 -1.636 1.414 H6 GY9 42 GY9 H7 H7 H 0 1 N N N 123.383 107.007 286.606 6.667 -4.971 -1.595 H7 GY9 43 GY9 H8 H8 H 0 1 N N N 125.612 107.222 285.639 5.413 -5.177 0.513 H8 GY9 44 GY9 H9 H9 H 0 1 N N N 123.391 102.848 285.725 5.445 -0.900 -1.936 H9 GY9 45 GY9 H10 H10 H 0 1 N N N 122.274 104.822 286.650 6.684 -2.835 -2.818 H10 GY9 46 GY9 H11 H11 H 0 1 N N N 128.654 102.122 278.530 -9.979 -1.871 -0.897 H11 GY9 47 GY9 H12 H12 H 0 1 N N N 128.570 100.186 280.032 -8.676 -1.172 -2.864 H12 GY9 48 GY9 H13 H13 H 0 1 N N N 129.929 100.141 282.087 -6.219 -1.085 -2.748 H13 GY9 49 GY9 H14 H14 H 0 1 N N N 131.468 104.013 281.119 -6.372 -2.408 1.313 H14 GY9 50 GY9 H15 H15 H 0 1 N N N 130.104 104.024 279.067 -8.829 -2.492 1.188 H15 GY9 51 GY9 H16 H16 H 0 1 N N N 128.853 98.989 288.361 3.145 4.733 -2.958 H16 GY9 52 GY9 H17 H17 H 0 1 N N N 129.670 100.554 288.030 4.190 4.763 -1.499 H17 GY9 53 GY9 H18 H18 H 0 1 N N N 127.582 101.162 289.173 2.151 5.689 -0.609 H18 GY9 54 GY9 H19 H19 H 0 1 N N N 126.630 100.017 288.168 1.125 4.651 -1.651 H19 GY9 55 GY9 H20 H20 H 0 1 N N N 126.367 102.029 286.917 2.550 3.975 0.918 H20 GY9 56 GY9 H21 H21 H 0 1 N N N 127.982 98.835 286.143 2.560 2.424 -2.632 H21 GY9 57 GY9 H22 H22 H 0 1 N N N 129.562 99.630 285.829 4.268 2.428 -2.099 H22 GY9 58 GY9 H23 H23 H 0 1 N N N 126.924 103.918 288.554 0.018 5.015 0.779 H23 GY9 59 GY9 H24 H24 H 0 1 N N N 131.167 102.326 285.448 -3.133 0.140 0.628 H24 GY9 60 GY9 H25 H25 H 0 1 N N N 131.383 106.191 287.444 -3.717 2.545 1.443 H25 GY9 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GY9 C20 C25 DOUB Y N 1 GY9 C20 C21 SING Y N 2 GY9 C25 C24 SING Y N 3 GY9 C21 C22 DOUB Y N 4 GY9 C24 C23 DOUB Y N 5 GY9 C22 C23 SING Y N 6 GY9 C23 O6 SING N N 7 GY9 O6 C13 SING N N 8 GY9 C13 C12 SING N N 9 GY9 O5 C10 DOUB N N 10 GY9 C11 O4 SING N N 11 GY9 C11 C10 SING N N 12 GY9 CL1 C16 SING N N 13 GY9 C12 N3 SING N N 14 GY9 O4 C17 SING N N 15 GY9 C10 N4 SING N N 16 GY9 C16 C17 DOUB Y N 17 GY9 C16 C15 SING Y N 18 GY9 C17 C18 SING Y N 19 GY9 N3 C5 SING N N 20 GY9 C15 C14 DOUB Y N 21 GY9 C18 C19 DOUB Y N 22 GY9 N4 C9 SING N N 23 GY9 N4 C8 SING N N 24 GY9 C14 C19 SING Y N 25 GY9 C5 O3 DOUB N N 26 GY9 C5 C2 SING N N 27 GY9 C9 C6 SING N N 28 GY9 N1 C2 SING N N 29 GY9 N1 C1 DOUB N N 30 GY9 C2 C3 DOUB N N 31 GY9 C8 C1 SING N N 32 GY9 C8 C7 SING N N 33 GY9 C1 N2 SING N N 34 GY9 C3 O1 SING N N 35 GY9 C3 C4 SING N N 36 GY9 C6 C7 SING N N 37 GY9 N2 C4 SING N N 38 GY9 C4 O2 DOUB N N 39 GY9 C11 H1 SING N N 40 GY9 C11 H2 SING N N 41 GY9 C12 H3 SING N N 42 GY9 C12 H4 SING N N 43 GY9 C13 H5 SING N N 44 GY9 C13 H6 SING N N 45 GY9 C14 H7 SING N N 46 GY9 C15 H8 SING N N 47 GY9 C18 H9 SING N N 48 GY9 C19 H10 SING N N 49 GY9 C20 H11 SING N N 50 GY9 C21 H12 SING N N 51 GY9 C22 H13 SING N N 52 GY9 C24 H14 SING N N 53 GY9 C25 H15 SING N N 54 GY9 C6 H16 SING N N 55 GY9 C6 H17 SING N N 56 GY9 C7 H18 SING N N 57 GY9 C7 H19 SING N N 58 GY9 C8 H20 SING N N 59 GY9 C9 H21 SING N N 60 GY9 C9 H22 SING N N 61 GY9 N2 H23 SING N N 62 GY9 N3 H24 SING N N 63 GY9 O1 H25 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GY9 SMILES ACDLabs 12.01 "C=2(NC(C(=C(C(=O)NCCOc1ccccc1)N=2)O)=O)C4CCCN4C(COc3c(cccc3)Cl)=O" GY9 InChI InChI 1.03 "InChI=1S/C25H25ClN4O6/c26-17-9-4-5-11-19(17)36-15-20(31)30-13-6-10-18(30)23-28-21(22(32)25(34)29-23)24(33)27-12-14-35-16-7-2-1-3-8-16/h1-5,7-9,11,18,32H,6,10,12-15H2,(H,27,33)(H,28,29,34)/t18-/m0/s1" GY9 InChIKey InChI 1.03 FJNCSYKYMWITQI-SFHVURJKSA-N GY9 SMILES_CANONICAL CACTVS 3.385 "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)COc3ccccc3Cl)C(=O)NCCOc4ccccc4" GY9 SMILES CACTVS 3.385 "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)COc3ccccc3Cl)C(=O)NCCOc4ccccc4" GY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)OCCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)COc4ccccc4Cl)O" GY9 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)OCCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)COc4ccccc4Cl)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GY9 "SYSTEMATIC NAME" ACDLabs 12.01 "2-{(2S)-1-[(2-chlorophenoxy)acetyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide" GY9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(2~{S})-1-[2-(2-chloranylphenoxy)ethanoyl]pyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-(2-phenoxyethyl)-1~{H}-pyrimidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GY9 "Create component" 2017-06-22 RCSB GY9 "Initial release" 2018-01-17 RCSB GY9 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GY9 _pdbx_chem_comp_synonyms.name SRI-29835 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##