data_GYN # _chem_comp.id GYN _chem_comp.name "GYMNODIMINE A" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H47 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-12-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.720 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GYN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2X00 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GYN O6 O6 O 0 1 N N N -21.257 12.323 -12.060 -7.253 -1.266 1.504 O6 GYN 1 GYN C5 C5 C 0 1 N N N -21.326 11.226 -11.516 -6.503 -0.848 0.655 C5 GYN 2 GYN O1 O1 O 0 1 N N N -22.052 11.039 -10.277 -5.170 -0.763 0.778 O1 GYN 3 GYN C2 C2 C 0 1 N N S -22.037 9.636 -10.006 -4.553 -0.696 -0.542 C2 GYN 4 GYN C3 C3 C 0 1 N N N -20.944 9.003 -10.881 -5.604 0.016 -1.423 C3 GYN 5 GYN C4 C4 C 0 1 N N S -20.725 9.958 -12.045 -6.925 -0.347 -0.709 C4 GYN 6 GYN C7 C7 C 0 1 N N N -19.267 10.124 -12.465 -7.810 0.893 -0.571 C7 GYN 7 GYN C8 C8 C 0 1 N N N -21.829 9.437 -8.529 -3.280 0.108 -0.487 C8 GYN 8 GYN C13 C13 C 0 1 N N N -22.790 8.862 -7.786 -2.203 -0.438 -0.962 C13 GYN 9 GYN C14 C14 C 0 1 N N N -23.979 8.255 -8.482 -2.272 -1.833 -1.528 C14 GYN 10 GYN C12 C12 C 0 1 N N S -22.728 8.809 -6.264 -0.886 0.292 -0.959 C12 GYN 11 GYN C27 C27 C 0 1 N N R -21.626 9.726 -5.668 -0.860 1.341 0.138 C27 GYN 12 GYN C10 C10 C 0 1 N N N -20.348 9.535 -6.474 -2.063 2.271 -0.092 C10 GYN 13 GYN C9 C9 C 0 1 N N N -20.531 9.947 -7.934 -3.352 1.481 0.105 C9 GYN 14 GYN C15 C15 C 0 1 N N N -24.092 9.104 -5.628 0.276 -0.632 -0.976 C15 GYN 15 GYN C16 C16 C 0 1 N N N -24.924 8.188 -5.086 0.432 -1.747 -0.319 C16 GYN 16 GYN C19 C19 C 0 1 N N N -24.589 6.718 -5.068 -0.565 -2.282 0.671 C19 GYN 17 GYN C17 C17 C 0 1 N N S -26.227 8.648 -4.476 1.671 -2.568 -0.622 C17 GYN 18 GYN O20 O20 O 0 1 N N N -27.329 8.030 -5.154 2.690 -1.713 -1.145 O20 GYN 19 GYN C18 C18 C 0 1 N N N -26.283 8.248 -3.003 2.177 -3.236 0.655 C18 GYN 20 GYN C21 C21 C 0 1 N N N -25.959 9.409 -2.069 3.678 -2.958 0.808 C21 GYN 21 GYN C43 C43 C 0 1 N N S -24.708 9.110 -1.256 3.914 -1.458 0.642 C43 GYN 22 GYN C47 C47 C 0 1 N N N -24.522 10.012 -0.043 4.959 -0.955 1.657 C47 GYN 23 GYN C48 C48 C 0 1 N N R -23.824 9.115 0.972 5.754 0.103 0.863 C48 GYN 24 GYN C49 C49 C 0 1 N N N -24.652 8.975 2.246 7.256 -0.170 0.976 C49 GYN 25 GYN O43 O43 O 0 1 N N N -24.662 7.776 -0.728 4.434 -1.178 -0.666 O43 GYN 26 GYN C37 C37 C 0 1 N N R -23.672 7.752 0.303 5.299 -0.037 -0.593 C37 GYN 27 GYN C36 C36 C 0 1 N N N -22.300 7.543 -0.292 4.539 1.184 -1.037 C36 GYN 28 GYN C38 C38 C 0 1 N N N -21.142 7.133 0.582 5.142 2.101 -2.071 C38 GYN 29 GYN C35 C35 C 0 1 N N N -22.148 7.704 -1.624 3.357 1.451 -0.536 C35 GYN 30 GYN C34 C34 C 0 1 N N N -20.862 7.551 -2.404 2.585 2.663 -0.989 C34 GYN 31 GYN C33 C33 C 0 1 N N N -21.108 7.826 -3.885 1.116 2.304 -1.226 C33 GYN 32 GYN C32 C32 C 0 1 N N N -21.296 9.294 -4.251 0.417 2.120 0.092 C32 GYN 33 GYN N31 N31 N 0 1 N N N -21.141 10.174 -3.350 0.982 2.620 1.116 N31 GYN 34 GYN C30 C30 C 0 1 N N N -21.633 11.543 -3.227 0.511 2.482 2.480 C30 GYN 35 GYN C46 C46 C 0 1 N N N -22.554 11.805 -4.415 -0.863 1.834 2.570 C46 GYN 36 GYN C28 C28 C 0 1 N N N -22.017 11.215 -5.720 -1.000 0.716 1.529 C28 GYN 37 GYN H4 H4 H 0 1 N N N -21.180 9.596 -12.979 -7.450 -1.131 -1.255 H4 GYN 38 GYN H2 H2 H 0 1 N N N -22.986 9.141 -10.258 -4.355 -1.699 -0.920 H2 GYN 39 GYN H31C H31C H 0 0 N N N -20.015 8.875 -10.306 -5.443 1.094 -1.425 H31C GYN 40 GYN H32C H32C H 0 0 N N N -21.244 8.005 -11.234 -5.593 -0.381 -2.438 H32C GYN 41 GYN H71C H71C H 0 0 N N N -19.203 10.164 -13.562 -7.265 1.671 -0.037 H71C GYN 42 GYN H72C H72C H 0 0 N N N -18.867 11.057 -12.040 -8.085 1.256 -1.561 H72C GYN 43 GYN H73C H73C H 0 0 N N N -18.680 9.271 -12.095 -8.712 0.635 -0.016 H73C GYN 44 GYN H91C H91C H 0 0 N N N -19.696 9.534 -8.518 -4.176 2.023 -0.360 H91C GYN 45 GYN H92C H92C H 0 0 N N N -20.557 11.046 -7.970 -3.549 1.395 1.174 H92C GYN 46 GYN H141 H141 H 0 0 N N N -24.793 8.107 -7.757 -3.024 -1.868 -2.317 H141 GYN 47 GYN H142 H142 H 0 0 N N N -24.319 8.929 -9.282 -1.301 -2.107 -1.939 H142 GYN 48 GYN H143 H143 H 0 0 N N N -23.694 7.285 -8.916 -2.543 -2.533 -0.738 H143 GYN 49 GYN H12 H12 H 0 1 N N N -22.450 7.775 -6.011 -0.866 0.855 -1.924 H12 GYN 50 GYN H15 H15 H 0 1 N N N -24.416 10.134 -5.612 1.122 -0.359 -1.632 H15 GYN 51 GYN H101 H101 H 0 0 N N N -19.555 10.154 -6.030 -2.027 3.096 0.618 H101 GYN 52 GYN H102 H102 H 0 0 N N N -20.083 8.468 -6.449 -2.032 2.663 -1.109 H102 GYN 53 GYN H281 H281 H 0 0 N N N -21.116 11.783 -5.993 -1.978 0.244 1.623 H281 GYN 54 GYN H282 H282 H 0 0 N N N -22.839 11.288 -6.447 -0.215 -0.025 1.680 H282 GYN 55 GYN H191 H191 H 0 0 N N N -24.507 6.347 -6.100 -1.390 -1.577 0.772 H191 GYN 56 GYN H192 H192 H 0 0 N N N -23.632 6.567 -4.548 -0.947 -3.240 0.321 H192 GYN 57 GYN H193 H193 H 0 0 N N N -25.383 6.168 -4.543 -0.080 -2.414 1.639 H193 GYN 58 GYN H17 H17 H 0 1 N N N -26.290 9.742 -4.572 1.428 -3.334 -1.358 H17 GYN 59 GYN H20 H20 H 0 1 N N N -28.042 7.893 -4.541 2.488 -1.349 -2.018 H20 GYN 60 GYN H181 H181 H 0 0 N N N -27.299 7.892 -2.777 1.643 -2.832 1.515 H181 GYN 61 GYN H182 H182 H 0 0 N N N -25.528 7.465 -2.839 2.011 -4.312 0.594 H182 GYN 62 GYN H211 H211 H 0 0 N N N -25.791 10.316 -2.668 4.010 -3.274 1.797 H211 GYN 63 GYN H212 H212 H 0 0 N N N -26.803 9.556 -1.380 4.231 -3.502 0.042 H212 GYN 64 GYN H43 H43 H 0 1 N N N -23.917 9.276 -2.002 2.977 -0.924 0.793 H43 GYN 65 GYN H471 H471 H 0 0 N N N -23.911 10.893 -0.288 4.470 -0.501 2.519 H471 GYN 66 GYN H472 H472 H 0 0 N N N -25.473 10.417 0.333 5.612 -1.770 1.971 H472 GYN 67 GYN H48 H48 H 0 1 N N N -22.853 9.542 1.263 5.525 1.102 1.233 H48 GYN 68 GYN H491 H491 H 0 0 N N N -23.982 8.941 3.118 7.473 -1.168 0.597 H491 GYN 69 GYN H492 H492 H 0 0 N N N -25.331 9.836 2.339 7.804 0.568 0.390 H492 GYN 70 GYN H493 H493 H 0 0 N N N -25.241 8.047 2.200 7.560 -0.104 2.020 H493 GYN 71 GYN H37 H37 H 0 1 N N N -23.796 6.930 1.024 6.163 -0.191 -1.242 H37 GYN 72 GYN H381 H381 H 0 0 N N N -20.235 7.033 -0.033 4.842 1.774 -3.066 H381 GYN 73 GYN H382 H382 H 0 0 N N N -20.978 7.898 1.356 4.791 3.119 -1.902 H382 GYN 74 GYN H383 H383 H 0 0 N N N -21.368 6.169 1.061 6.229 2.074 -1.992 H383 GYN 75 GYN H35 H35 H 0 1 N N N -23.031 7.968 -2.187 2.934 0.800 0.216 H35 GYN 76 GYN H341 H341 H 0 0 N N N -20.119 8.266 -2.021 2.647 3.437 -0.223 H341 GYN 77 GYN H342 H342 H 0 0 N N N -20.491 6.522 -2.286 3.018 3.041 -1.915 H342 GYN 78 GYN H331 H331 H 0 0 N N N -20.235 7.454 -4.442 0.632 3.106 -1.784 H331 GYN 79 GYN H332 H332 H 0 0 N N N -22.052 7.322 -4.140 1.057 1.379 -1.800 H332 GYN 80 GYN H301 H301 H 0 0 N N N -22.186 11.664 -2.284 1.223 1.873 3.037 H301 GYN 81 GYN H302 H302 H 0 0 N N N -20.796 12.257 -3.221 0.464 3.470 2.937 H302 GYN 82 GYN H461 H461 H 0 0 N N N -23.532 11.348 -4.204 -0.999 1.416 3.567 H461 GYN 83 GYN H462 H462 H 0 0 N N N -22.628 12.895 -4.547 -1.628 2.589 2.390 H462 GYN 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GYN O6 C5 DOUB N N 1 GYN C5 O1 SING N N 2 GYN C5 C4 SING N N 3 GYN O1 C2 SING N N 4 GYN C2 C3 SING N N 5 GYN C2 C8 SING N N 6 GYN C3 C4 SING N N 7 GYN C4 C7 SING N N 8 GYN C8 C13 DOUB N N 9 GYN C8 C9 SING N N 10 GYN C13 C14 SING N N 11 GYN C13 C12 SING N N 12 GYN C12 C27 SING N N 13 GYN C12 C15 SING N N 14 GYN C27 C10 SING N N 15 GYN C27 C32 SING N N 16 GYN C27 C28 SING N N 17 GYN C10 C9 SING N N 18 GYN C15 C16 DOUB N N 19 GYN C16 C19 SING N N 20 GYN C16 C17 SING N N 21 GYN C17 O20 SING N N 22 GYN C17 C18 SING N N 23 GYN C18 C21 SING N N 24 GYN C21 C43 SING N N 25 GYN C43 C47 SING N N 26 GYN C43 O43 SING N N 27 GYN C47 C48 SING N N 28 GYN C48 C49 SING N N 29 GYN C48 C37 SING N N 30 GYN O43 C37 SING N N 31 GYN C37 C36 SING N N 32 GYN C36 C38 SING N N 33 GYN C36 C35 DOUB N E 34 GYN C35 C34 SING N N 35 GYN C34 C33 SING N N 36 GYN C33 C32 SING N N 37 GYN C32 N31 DOUB N N 38 GYN N31 C30 SING N N 39 GYN C30 C46 SING N N 40 GYN C46 C28 SING N N 41 GYN C4 H4 SING N N 42 GYN C2 H2 SING N N 43 GYN C3 H31C SING N N 44 GYN C3 H32C SING N N 45 GYN C7 H71C SING N N 46 GYN C7 H72C SING N N 47 GYN C7 H73C SING N N 48 GYN C9 H91C SING N N 49 GYN C9 H92C SING N N 50 GYN C14 H141 SING N N 51 GYN C14 H142 SING N N 52 GYN C14 H143 SING N N 53 GYN C12 H12 SING N N 54 GYN C15 H15 SING N N 55 GYN C10 H101 SING N N 56 GYN C10 H102 SING N N 57 GYN C28 H281 SING N N 58 GYN C28 H282 SING N N 59 GYN C19 H191 SING N N 60 GYN C19 H192 SING N N 61 GYN C19 H193 SING N N 62 GYN C17 H17 SING N N 63 GYN O20 H20 SING N N 64 GYN C18 H181 SING N N 65 GYN C18 H182 SING N N 66 GYN C21 H211 SING N E 67 GYN C21 H212 SING N N 68 GYN C43 H43 SING N N 69 GYN C47 H471 SING N N 70 GYN C47 H472 SING N N 71 GYN C48 H48 SING N N 72 GYN C49 H491 SING N N 73 GYN C49 H492 SING N N 74 GYN C49 H493 SING N N 75 GYN C37 H37 SING N N 76 GYN C38 H381 SING N N 77 GYN C38 H382 SING N N 78 GYN C38 H383 SING N N 79 GYN C35 H35 SING N N 80 GYN C34 H341 SING N N 81 GYN C34 H342 SING N N 82 GYN C33 H331 SING N N 83 GYN C33 H332 SING N N 84 GYN C30 H301 SING N N 85 GYN C30 H302 SING N N 86 GYN C46 H461 SING N N 87 GYN C46 H462 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GYN SMILES ACDLabs 10.04 "O=C5OC(C3=C(C2C=C(C(O)CCC4OC(C(=CCCC1=NCCCC12CC3)C)C(C)C4)C)C)CC5C" GYN SMILES_CANONICAL CACTVS 3.352 "C[C@@H]1C[C@@H]2CC[C@H](O)C(=C/[C@H]3C(=C(CC[C@@]34CCCN=C4CC/C=C(C)/[C@@H]1O2)[C@@H]5C[C@H](C)C(=O)O5)C)/C" GYN SMILES CACTVS 3.352 "C[CH]1C[CH]2CC[CH](O)C(=C[CH]3C(=C(CC[C]34CCCN=C4CCC=C(C)[CH]1O2)[CH]5C[CH](C)C(=O)O5)C)C" GYN SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[C@@H]1C[C@@H]2CC[C@@H](/C(=C/[C@H]3C(=C(CC[C@@]34CCCN=C4CC\C=C(\[C@@H]1O2)/C)[C@@H]5C[C@@H](C(=O)O5)C)C)/C)O" GYN SMILES "OpenEye OEToolkits" 1.6.1 "CC1CC2CCC(C(=CC3C(=C(CCC34CCCN=C4CCC=C(C1O2)C)C5CC(C(=O)O5)C)C)C)O" GYN InChI InChI 1.03 "InChI=1S/C32H47NO4/c1-19-8-6-9-29-32(13-7-15-33-29)14-12-25(28-18-22(4)31(35)37-28)23(5)26(32)17-20(2)27(34)11-10-24-16-21(3)30(19)36-24/h8,17,21-22,24,26-28,30,34H,6-7,9-16,18H2,1-5H3/b19-8+,20-17+/t21-,22+,24+,26+,27+,28+,30+,32+/m1/s1" GYN InChIKey InChI 1.03 LFQBHRXYGKMZFS-XGHAUHBHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GYN "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,5S)-5-[(4aR,8aS,9E,11S,14S,16R,17R,18E)-11-hydroxy-8,10,16,18-tetramethyl-3,4,5,6,8a,11,12,13,14,15,16,17,20,21-tetradecahydro-2H-14,17-epoxybenzo[2,3]cyclohexadeca[1,2-b]pyridin-7-yl]-3-methyldihydrofuran-2(3H)-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GYN "Create component" 2009-12-04 EBI GYN "Modify descriptor" 2011-06-04 RCSB #