data_GYR # _chem_comp.id GYR _chem_comp.name "{(2R)-1-[4-({3-METHYL-5-[(PHENYLSULFONYL)METHYL]PHENOXY}METHYL)BENZYL]PYRROLIDIN-2-YL}METHANOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 N O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms PF-543 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-10-05 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 465.604 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4V24 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GYR OBG OBG O 0 1 N N N -7.854 -3.488 -33.790 -4.514 -1.298 -1.168 OBG GYR 1 GYR SAJ SAJ S 0 1 N N N -7.753 -2.048 -33.875 -5.395 -0.313 -0.645 SAJ GYR 2 GYR OBF OBF O 0 1 N N N -8.404 -1.367 -34.956 -5.917 0.717 -1.473 OBF GYR 3 GYR CAK CAK C 0 1 Y N N -6.033 -1.635 -33.911 -6.815 -1.226 -0.139 CAK GYR 4 GYR CAR CAR C 0 1 Y N N -5.128 -2.445 -33.248 -8.051 -0.608 -0.088 CAR GYR 5 GYR CAQ CAQ C 0 1 Y N N -3.779 -2.141 -33.314 -9.165 -1.324 0.308 CAQ GYR 6 GYR CAP CAP C 0 1 Y N N -3.347 -1.044 -34.009 -9.043 -2.657 0.654 CAP GYR 7 GYR CAO CAO C 0 1 Y N N -4.257 -0.243 -34.669 -7.808 -3.275 0.602 CAO GYR 8 GYR CAN CAN C 0 1 Y N N -5.607 -0.531 -34.627 -6.694 -2.560 0.201 CAN GYR 9 GYR CAI CAI C 0 1 N N N -8.348 -1.369 -32.324 -4.731 0.381 0.894 CAI GYR 10 GYR CAB CAB C 0 1 Y N N -8.687 0.094 -32.407 -3.499 1.193 0.589 CAB GYR 11 GYR CAA CAA C 0 1 Y N N -9.935 0.483 -32.878 -3.613 2.540 0.301 CAA GYR 12 GYR CAF CAF C 0 1 Y N N -10.361 1.803 -32.805 -2.484 3.288 0.021 CAF GYR 13 GYR CAG CAG C 0 1 N N N -11.734 2.192 -33.293 -2.613 4.756 -0.293 CAG GYR 14 GYR CAE CAE C 0 1 Y N N -9.506 2.756 -32.240 -1.239 2.690 0.027 CAE GYR 15 GYR CAD CAD C 0 1 Y N N -8.251 2.374 -31.771 -1.122 1.338 0.316 CAD GYR 16 GYR CAC CAC C 0 1 Y N N -7.825 1.057 -31.882 -2.256 0.591 0.601 CAC GYR 17 GYR OAH OAH O 0 1 N N N -7.356 3.194 -31.109 0.102 0.747 0.323 OAH GYR 18 GYR CAL CAL C 0 1 N N N -7.719 4.575 -30.867 1.225 1.578 0.024 CAL GYR 19 GYR CAM CAM C 0 1 Y N N -6.712 5.239 -29.966 2.487 0.756 0.079 CAM GYR 20 GYR CAS CAS C 0 1 Y N N -6.365 6.565 -30.147 2.948 0.121 -1.059 CAS GYR 21 GYR CAT CAT C 0 1 Y N N -5.354 7.149 -29.397 4.105 -0.633 -1.009 CAT GYR 22 GYR CAU CAU C 0 1 Y N N -4.679 6.431 -28.420 4.802 -0.752 0.179 CAU GYR 23 GYR CAV CAV C 0 1 Y N N -5.046 5.111 -28.220 4.342 -0.115 1.316 CAV GYR 24 GYR CAW CAW C 0 1 Y N N -6.042 4.523 -28.983 3.187 0.642 1.265 CAW GYR 25 GYR CAX CAX C 0 1 N N N -3.586 7.066 -27.583 6.064 -1.574 0.233 CAX GYR 26 GYR NAY NAY N 0 1 N N N -2.415 7.682 -28.372 7.219 -0.721 -0.075 NAY GYR 27 GYR CAZ CAZ C 0 1 N N R -1.462 6.722 -29.092 8.437 -1.529 -0.265 CAZ GYR 28 GYR CBD CBD C 0 1 N N N -1.594 6.796 -30.603 8.982 -1.325 -1.680 CBD GYR 29 GYR OBE OBE O 0 1 N N N -1.198 8.060 -31.132 9.406 0.031 -1.835 OBE GYR 30 GYR CBA CBA C 0 1 N N N -0.025 7.005 -28.657 9.473 -1.046 0.772 CBA GYR 31 GYR CBB CBB C 0 1 N N N -0.188 7.767 -27.387 8.592 -0.383 1.863 CBB GYR 32 GYR CBC CBC C 0 1 N N N -1.473 8.571 -27.585 7.464 0.251 1.012 CBC GYR 33 GYR HAI1 HAI1 H 0 0 N N N -9.252 -1.920 -32.025 -5.482 1.021 1.357 HAI1 GYR 34 GYR HAI2 HAI2 H 0 0 N N N -7.567 -1.504 -31.561 -4.473 -0.429 1.576 HAI2 GYR 35 GYR HAR HAR H 0 1 N N N -5.469 -3.302 -32.687 -8.146 0.433 -0.358 HAR GYR 36 GYR HAN HAN H 0 1 N N N -6.318 0.095 -35.145 -5.729 -3.043 0.157 HAN GYR 37 GYR HAQ HAQ H 0 1 N N N -3.062 -2.774 -32.813 -10.130 -0.842 0.349 HAQ GYR 38 GYR HAP HAP H 0 1 N N N -2.294 -0.805 -34.041 -9.914 -3.216 0.964 HAP GYR 39 GYR HAO HAO H 0 1 N N N -3.910 0.617 -35.223 -7.713 -4.316 0.872 HAO GYR 40 GYR HAA HAA H 0 1 N N N -10.590 -0.259 -33.311 -4.586 3.010 0.296 HAA GYR 41 GYR HAC HAC H 0 1 N N N -6.831 0.780 -31.563 -2.167 -0.461 0.830 HAC GYR 42 GYR HAG1 HAG1 H 0 0 N N N -12.457 2.096 -32.470 -2.542 5.332 0.630 HAG1 GYR 43 GYR HAG2 HAG2 H 0 0 N N N -11.716 3.234 -33.645 -1.812 5.055 -0.969 HAG2 GYR 44 GYR HAG3 HAG3 H 0 0 N N N -12.030 1.530 -34.120 -3.577 4.944 -0.766 HAG3 GYR 45 GYR HAE HAE H 0 1 N N N -9.819 3.787 -32.168 -0.358 3.274 -0.192 HAE GYR 46 GYR HAL1 HAL1 H 0 0 N N N -7.755 5.112 -31.826 1.110 2.001 -0.974 HAL1 GYR 47 GYR HAL2 HAL2 H 0 0 N N N -8.709 4.610 -30.389 1.285 2.385 0.755 HAL2 GYR 48 GYR HAS HAS H 0 1 N N N -6.889 7.156 -30.884 2.403 0.213 -1.987 HAS GYR 49 GYR HAW HAW H 0 1 N N N -6.302 3.489 -28.810 2.830 1.142 2.153 HAW GYR 50 GYR HAT HAT H 0 1 N N N -5.088 8.180 -29.577 4.465 -1.130 -1.898 HAT GYR 51 GYR HAV HAV H 0 1 N N N -4.548 4.531 -27.457 4.887 -0.208 2.244 HAV GYR 52 GYR HAX1 HAX1 H 0 0 N N N -4.043 7.863 -26.978 6.179 -1.996 1.232 HAX1 GYR 53 GYR HAX2 HAX2 H 0 0 N N N -3.176 6.291 -26.918 6.003 -2.381 -0.497 HAX2 GYR 54 GYR HAZ HAZ H 0 1 N N N -1.715 5.698 -28.778 8.212 -2.584 -0.103 HAZ GYR 55 GYR HBC1 HBC1 H 0 0 N N N -1.262 9.493 -28.146 7.790 1.206 0.600 HBC1 GYR 56 GYR HBC2 HBC2 H 0 0 N N N -1.916 8.827 -26.611 6.564 0.384 1.613 HBC2 GYR 57 GYR HBD1 HBD1 H 0 0 N N N -0.962 6.015 -31.050 9.829 -1.991 -1.843 HBD1 GYR 58 GYR HBD2 HBD2 H 0 0 N N N -2.645 6.616 -30.873 8.200 -1.547 -2.406 HBD2 GYR 59 GYR HBA1 HBA1 H 0 0 N N N 0.525 6.068 -28.485 10.028 -1.889 1.184 HBA1 GYR 60 GYR HBA2 HBA2 H 0 0 N N N 0.503 7.607 -29.411 10.151 -0.317 0.328 HBA2 GYR 61 GYR HBE HBE H 0 1 N N N -1.299 8.054 -32.077 9.764 0.234 -2.711 HBE GYR 62 GYR HBB1 HBB1 H 0 0 N N N -0.286 7.082 -26.532 8.191 -1.130 2.549 HBB1 GYR 63 GYR HBB2 HBB2 H 0 0 N N N 0.669 8.437 -27.223 9.150 0.382 2.404 HBB2 GYR 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GYR OBG SAJ DOUB N N 1 GYR SAJ OBF DOUB N N 2 GYR SAJ CAK SING N N 3 GYR SAJ CAI SING N N 4 GYR CAK CAR SING Y N 5 GYR CAK CAN DOUB Y N 6 GYR CAR CAQ DOUB Y N 7 GYR CAQ CAP SING Y N 8 GYR CAP CAO DOUB Y N 9 GYR CAO CAN SING Y N 10 GYR CAI CAB SING N N 11 GYR CAB CAA SING Y N 12 GYR CAB CAC DOUB Y N 13 GYR CAA CAF DOUB Y N 14 GYR CAF CAG SING N N 15 GYR CAF CAE SING Y N 16 GYR CAE CAD DOUB Y N 17 GYR CAD CAC SING Y N 18 GYR CAD OAH SING N N 19 GYR OAH CAL SING N N 20 GYR CAL CAM SING N N 21 GYR CAM CAS SING Y N 22 GYR CAM CAW DOUB Y N 23 GYR CAS CAT DOUB Y N 24 GYR CAT CAU SING Y N 25 GYR CAU CAV DOUB Y N 26 GYR CAU CAX SING N N 27 GYR CAV CAW SING Y N 28 GYR CAX NAY SING N N 29 GYR NAY CAZ SING N N 30 GYR NAY CBC SING N N 31 GYR CAZ CBD SING N N 32 GYR CAZ CBA SING N N 33 GYR CBD OBE SING N N 34 GYR CBA CBB SING N N 35 GYR CBB CBC SING N N 36 GYR CAI HAI1 SING N N 37 GYR CAI HAI2 SING N N 38 GYR CAR HAR SING N N 39 GYR CAN HAN SING N N 40 GYR CAQ HAQ SING N N 41 GYR CAP HAP SING N N 42 GYR CAO HAO SING N N 43 GYR CAA HAA SING N N 44 GYR CAC HAC SING N N 45 GYR CAG HAG1 SING N N 46 GYR CAG HAG2 SING N N 47 GYR CAG HAG3 SING N N 48 GYR CAE HAE SING N N 49 GYR CAL HAL1 SING N N 50 GYR CAL HAL2 SING N N 51 GYR CAS HAS SING N N 52 GYR CAW HAW SING N N 53 GYR CAT HAT SING N N 54 GYR CAV HAV SING N N 55 GYR CAX HAX1 SING N N 56 GYR CAX HAX2 SING N N 57 GYR CAZ HAZ SING N N 58 GYR CBC HBC1 SING N N 59 GYR CBC HBC2 SING N N 60 GYR CBD HBD1 SING N N 61 GYR CBD HBD2 SING N N 62 GYR CBA HBA1 SING N N 63 GYR CBA HBA2 SING N N 64 GYR OBE HBE SING N N 65 GYR CBB HBB1 SING N N 66 GYR CBB HBB2 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GYR SMILES ACDLabs 12.01 "O=S(=O)(c1ccccc1)Cc4cc(cc(OCc2ccc(cc2)CN3C(CCC3)CO)c4)C" GYR InChI InChI 1.03 "InChI=1S/C27H31NO4S/c1-21-14-24(20-33(30,31)27-7-3-2-4-8-27)16-26(15-21)32-19-23-11-9-22(10-12-23)17-28-13-5-6-25(28)18-29/h2-4,7-12,14-16,25,29H,5-6,13,17-20H2,1H3/t25-/m1/s1" GYR InChIKey InChI 1.03 NPUXORBZRBIOMQ-RUZDIDTESA-N GYR SMILES_CANONICAL CACTVS 3.385 "Cc1cc(C[S](=O)(=O)c2ccccc2)cc(OCc3ccc(CN4CCC[C@@H]4CO)cc3)c1" GYR SMILES CACTVS 3.385 "Cc1cc(C[S](=O)(=O)c2ccccc2)cc(OCc3ccc(CN4CCC[CH]4CO)cc3)c1" GYR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc(cc(c1)OCc2ccc(cc2)CN3CCC[C@@H]3CO)CS(=O)(=O)c4ccccc4" GYR SMILES "OpenEye OEToolkits" 1.7.6 "Cc1cc(cc(c1)OCc2ccc(cc2)CN3CCCC3CO)CS(=O)(=O)c4ccccc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GYR "SYSTEMATIC NAME" ACDLabs 12.01 "{(2R)-1-[4-({3-methyl-5-[(phenylsulfonyl)methyl]phenoxy}methyl)benzyl]pyrrolidin-2-yl}methanol" GYR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R)-1-[[4-[[3-methyl-5-(phenylsulfonylmethyl)phenoxy]methyl]phenyl]methyl]pyrrolidin-2-yl]methanol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GYR "Create component" 2014-10-05 EBI GYR "Initial release" 2014-10-15 RCSB GYR "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GYR _pdbx_chem_comp_synonyms.name PF-543 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##