data_GZL # _chem_comp.id GZL _chem_comp.name beta-D-galactofuranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-D-galactose; D-galactose; galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-12-16 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GZL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VK2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GZL beta-D-galactose PDB ? 2 GZL D-galactose PDB ? 3 GZL galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GZL C6 C1 C 0 1 N N N 34.322 26.945 14.744 2.593 0.788 0.086 C6 GZL 1 GZL C5 C2 C 0 1 N N S 33.801 26.648 13.537 1.579 -0.219 -0.461 C5 GZL 2 GZL C4 C3 C 0 1 N N S 33.040 27.639 12.676 0.193 0.426 -0.504 C4 GZL 3 GZL C3 C4 C 0 1 N N S 33.100 29.118 12.943 -0.857 -0.617 -0.934 C3 GZL 4 GZL C2 C5 C 0 1 N N R 33.294 29.779 11.810 -1.864 -0.649 0.242 C2 GZL 5 GZL O6 O1 O 0 1 N N N 34.966 26.027 15.471 3.906 0.227 0.018 O6 GZL 6 GZL O5 O2 O 0 1 N N N 33.869 25.389 13.090 1.544 -1.368 0.389 O5 GZL 7 GZL O4 O3 O 0 1 N N N 33.468 27.539 11.311 -0.174 0.886 0.807 O4 GZL 8 GZL O3 O4 O 0 1 N N N 32.891 29.646 14.144 -1.507 -0.205 -2.138 O3 GZL 9 GZL C1 C6 C 0 1 N N R 33.514 28.828 10.689 -1.602 0.715 0.930 C1 GZL 10 GZL O2 O5 O 0 1 N N N 33.335 31.098 11.613 -1.577 -1.731 1.129 O2 GZL 11 GZL O1 O6 O 0 1 N Y N 32.495 28.930 9.700 -2.295 1.764 0.249 O1 GZL 12 GZL H61 H11 H 0 1 N N N 35.053 27.746 14.562 2.557 1.700 -0.510 H61 GZL 13 GZL H62 H12 H 0 1 N N N 33.429 27.155 15.351 2.351 1.021 1.123 H62 GZL 14 GZL HO6 H1 H 0 1 N Y N 35.119 25.253 14.941 4.601 0.812 0.349 HO6 GZL 15 GZL H5 H21 H 0 1 N N N 34.556 27.445 13.608 1.872 -0.520 -1.467 H5 GZL 16 GZL H4 H31 H 0 1 N N N 32.017 27.322 12.928 0.194 1.261 -1.205 H4 GZL 17 GZL HO5 H2 H 0 1 N Y N 33.885 25.390 12.140 1.290 -1.174 1.302 HO5 GZL 18 GZL H3 H41 H 0 1 N N N 33.443 29.707 13.806 -0.393 -1.594 -1.065 H3 GZL 19 GZL HO3 H4 H 0 1 N Y N 32.841 28.952 14.791 -2.178 -0.825 -2.455 HO3 GZL 20 GZL H2 H51 H 0 1 N N N 33.072 30.806 12.135 -2.889 -0.709 -0.125 H2 GZL 21 GZL H1 H61 H 0 1 N N N 34.461 29.028 10.167 -1.896 0.678 1.979 H1 GZL 22 GZL HO2 H5 H 0 1 N Y N 33.345 31.544 12.452 -2.181 -1.793 1.882 HO2 GZL 23 GZL HO1 H6 H 0 1 N Y N 31.644 28.953 10.122 -2.165 2.639 0.639 HO1 GZL 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GZL C6 C5 SING N N 1 GZL C6 O6 SING N N 2 GZL C5 C4 SING N N 3 GZL C5 O5 SING N N 4 GZL C5 H5 SING N N 5 GZL C4 C3 SING N N 6 GZL C4 O4 SING N N 7 GZL C3 C2 SING N N 8 GZL C3 O3 SING N N 9 GZL C3 H3 SING N N 10 GZL C2 C1 SING N N 11 GZL C2 O2 SING N N 12 GZL C2 H2 SING N N 13 GZL O4 C1 SING N N 14 GZL C6 H61 SING N N 15 GZL C6 H62 SING N N 16 GZL O6 HO6 SING N N 17 GZL C4 H4 SING N N 18 GZL O5 HO5 SING N N 19 GZL O3 HO3 SING N N 20 GZL C1 H1 SING N N 21 GZL O2 HO2 SING N N 22 GZL C1 O1 SING N N 23 GZL O1 HO1 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GZL SMILES ACDLabs 10.04 "OC1C(OC(O)C1O)C(O)CO" GZL SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O)[C@@H]1O[C@@H](O)[C@H](O)[C@H]1O" GZL SMILES CACTVS 3.341 "OC[CH](O)[CH]1O[CH](O)[CH](O)[CH]1O" GZL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(C([C@H]1C(C([C@@H](O1)O)O)O)O)O" GZL SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C1C(C(C(O1)O)O)O)O)O" GZL InChI InChI 1.03 "InChI=1S/C6H12O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2-11H,1H2/t2-,3-,4-,5+,6-/m1/s1" GZL InChIKey InChI 1.03 AVVWPBAENSWJCB-DGPNFKTASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GZL "SYSTEMATIC NAME" ACDLabs 10.04 beta-D-galactofuranose GZL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,5S)-5-(1,2-dihydroxyethyl)oxolane-2,3,4-triol" GZL "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalfb GZL "COMMON NAME" GMML 1.0 b-D-galactofuranose GZL "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Galf GZL "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Gal # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GZL "CARBOHYDRATE ISOMER" D PDB ? GZL "CARBOHYDRATE RING" furanose PDB ? GZL "CARBOHYDRATE ANOMER" beta PDB ? GZL "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GZL "Create component" 2007-12-16 EBI GZL "Modify descriptor" 2011-06-04 RCSB GZL "Other modification" 2019-08-12 RCSB GZL "Other modification" 2019-12-19 RCSB GZL "Other modification" 2020-07-03 RCSB GZL "Modify name" 2020-07-17 RCSB GZL "Modify synonyms" 2020-07-17 RCSB GZL "Modify atom id" 2020-07-17 RCSB GZL "Modify component atom id" 2020-07-17 RCSB ##