data_H3I # _chem_comp.id H3I _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(7~{H}-purin-6-ylcarbamoyl)amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N12 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-21 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 528.481 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H3I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PWB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H3I N1 N1 N 0 1 Y N N N N N 9.391 -14.613 -10.670 -7.421 0.844 1.092 N1 H3I 1 H3I N3 N2 N 0 1 Y N N N N N 9.970 -16.806 -10.069 -5.668 -0.626 1.423 N3 H3I 2 H3I C4 C1 C 0 1 Y N N N N N 9.864 -17.216 -11.328 -4.949 -0.050 0.465 C4 H3I 3 H3I C5 C2 C 0 1 Y N N N N N 9.492 -16.306 -12.302 -5.490 1.044 -0.232 C5 H3I 4 H3I C6 C3 C 0 1 Y N N N N N 9.257 -14.954 -11.923 -6.777 1.483 0.120 C6 H3I 5 H3I C8 C4 C 0 1 Y N N N N N 9.765 -18.248 -13.245 -3.516 0.672 -1.048 C8 H3I 6 H3I N N3 N 0 1 N N N N N N 17.998 -22.481 -10.032 5.277 -1.609 1.665 N H3I 7 H3I CA C5 C 0 1 N N S N N N 16.780 -23.139 -9.679 4.847 -2.654 0.726 CA H3I 8 H3I C C6 C 0 1 N N N N N N 17.136 -24.587 -9.453 6.035 -3.134 -0.068 C H3I 9 H3I O O1 O 0 1 N N N N N N 16.272 -25.453 -9.425 7.024 -2.446 -0.151 O H3I 10 H3I CB C7 C 0 1 N N N N N N 15.714 -22.996 -10.788 3.795 -2.083 -0.226 CB H3I 11 H3I OXT O2 O 0 1 N N N N N N 18.313 -24.860 -9.308 5.993 -4.327 -0.683 OXT H3I 12 H3I C2 C8 C 0 1 Y N N N N N 9.742 -15.528 -9.750 -6.871 -0.180 1.718 C2 H3I 13 H3I CAL C9 C 0 1 Y N N N N N 13.007 -25.257 -17.455 1.395 4.156 -1.332 CAL H3I 14 H3I CAN C10 C 0 1 Y N N N N N 10.581 -27.544 -14.506 4.825 4.300 1.440 CAN H3I 15 H3I CAQ C11 C 0 1 N N N N N N 14.172 -23.330 -10.440 2.540 -1.710 0.566 CAQ H3I 16 H3I CAR C12 C 0 1 N N N N N N 13.191 -21.626 -12.072 0.563 -2.056 -0.987 CAR H3I 17 H3I CBC C13 C 0 1 N N N N N N 13.328 -24.064 -12.836 1.494 0.161 -0.593 CBC H3I 18 H3I CBE C14 C 0 1 Y N N N N N 12.523 -24.668 -15.251 2.347 2.348 -0.259 CBE H3I 19 H3I CBG C15 C 0 1 Y N N N N N 11.789 -25.842 -15.078 3.261 3.212 0.344 CBG H3I 20 H3I CBI C16 C 0 1 Y N N N N N 11.686 -26.703 -16.174 3.182 4.585 0.054 CBI H3I 21 H3I CBL C17 C 0 1 N N R N N N 10.886 -21.777 -11.036 -1.659 -3.218 -0.697 CBL H3I 22 H3I CBN C18 C 0 1 N N S N N N 9.937 -20.716 -11.726 -3.054 -2.622 -0.407 CBN H3I 23 H3I CBP C19 C 0 1 N N R N N N 12.241 -21.076 -10.956 -0.678 -2.185 -0.101 CBP H3I 24 H3I CBR C20 C 0 1 N N R N N N 10.397 -19.619 -11.236 -2.751 -1.299 0.330 CBR H3I 25 H3I N6 N4 N 0 1 N N N N N N 8.877 -13.958 -12.939 -7.362 2.556 -0.530 N6 H3I 26 H3I N7 N5 N 0 1 Y N N N N N 9.446 -16.981 -13.469 -4.565 1.437 -1.140 N7 H3I 27 H3I N9 N6 N 0 1 Y N N N N N 10.025 -18.400 -11.940 -3.704 -0.261 -0.072 N9 H3I 28 H3I NAT N7 N 0 1 Y N N N N N 13.122 -24.418 -16.434 1.438 2.860 -1.084 NAT H3I 29 H3I NAV N8 N 0 1 Y N N N N N 12.310 -26.369 -17.342 2.236 5.008 -0.788 NAV H3I 30 H3I NAX N9 N 0 1 Y N N N N N 11.091 -26.405 -14.076 4.312 3.067 1.225 NAX H3I 31 H3I NAY N10 N 0 1 N N N N N N 12.730 -23.655 -14.143 2.385 0.982 -0.003 NAY H3I 32 H3I NBS N11 N 0 1 N N N N N N 13.534 -23.010 -11.770 1.531 -1.164 -0.345 NBS H3I 33 H3I NBU N12 N 0 1 Y N N N N N 10.939 -27.738 -15.786 4.162 5.188 0.753 NBU H3I 34 H3I OAD O3 O 0 1 N N N N N N 13.615 -25.193 -12.630 0.658 0.614 -1.350 OAD H3I 35 H3I OAH O4 O 0 1 N N N N N N 10.484 -22.045 -9.791 -1.510 -4.483 -0.048 OAH H3I 36 H3I OAJ O5 O 0 1 N N N N N N 8.515 -20.917 -11.267 -3.809 -3.500 0.431 OAJ H3I 37 H3I OBA O6 O 0 1 N N N N N N 12.017 -19.805 -11.242 -1.414 -0.943 -0.086 OBA H3I 38 H3I H81 H1 H 0 1 N N N N N N 9.808 -19.028 -13.991 -2.627 0.763 -1.655 H81 H3I 39 H3I H2 H2 H 0 1 N N N N N N 17.818 -21.511 -10.194 5.677 -0.824 1.174 H2 H3I 40 H3I H H3 H 0 1 N N N N N N 18.657 -22.578 -9.286 4.512 -1.316 2.254 H H3I 41 H3I HA H5 H 0 1 N N N N N N 16.376 -22.717 -8.747 4.420 -3.489 1.282 HA H3I 42 H3I HB3 H6 H 0 1 N N N N N N 15.747 -21.953 -11.135 4.192 -1.195 -0.716 HB3 H3I 43 H3I HB2 H7 H 0 1 N N N N N N 16.011 -23.665 -11.609 3.541 -2.830 -0.978 HB2 H3I 44 H3I H3 H8 H 0 1 N N N N N N 18.408 -25.797 -9.181 6.779 -4.592 -1.181 H3 H3I 45 H3I H21 H9 H 0 1 N N N N N N 9.843 -15.221 -8.720 -7.429 -0.671 2.502 H21 H3I 46 H3I HAL1 H10 H 0 0 N N N N N N 13.492 -25.025 -18.392 0.644 4.530 -2.013 HAL1 H3I 47 H3I HAN1 H11 H 0 0 N N N N N N 9.971 -28.215 -13.920 5.662 4.517 2.087 HAN1 H3I 48 H3I HAQ2 H12 H 0 0 N N N N N N 13.786 -22.687 -9.636 2.142 -2.599 1.057 HAQ2 H3I 49 H3I HAQ1 H13 H 0 0 N N N N N N 14.034 -24.386 -10.164 2.793 -0.963 1.318 HAQ1 H3I 50 H3I HAR1 H14 H 0 0 N N N N N N 12.682 -21.577 -13.046 1.013 -3.039 -1.128 HAR1 H3I 51 H3I HAR2 H15 H 0 0 N N N N N N 14.108 -21.019 -12.107 0.278 -1.646 -1.956 HAR2 H3I 52 H3I HBL1 H16 H 0 0 N N N N N N 10.958 -22.672 -11.671 -1.503 -3.319 -1.771 HBL1 H3I 53 H3I HBN1 H17 H 0 0 N N N N N N 10.013 -20.800 -12.820 -3.588 -2.427 -1.337 HBN1 H3I 54 H3I HBP1 H18 H 0 0 N N N N N N 12.696 -21.234 -9.967 -0.392 -2.472 0.911 HBP1 H3I 55 H3I HBR1 H19 H 0 0 N N N N N N 10.104 -19.510 -10.181 -2.785 -1.449 1.410 HBR1 H3I 56 H3I H61 H20 H 0 1 N N N N N N 8.759 -13.066 -12.504 -8.252 2.849 -0.278 H61 H3I 57 H3I H62 H21 H 0 1 N N N N N N 9.596 -13.898 -13.632 -6.883 3.014 -1.238 H62 H3I 58 H3I H4 H22 H 0 1 N N N N N N 10.977 -26.024 -13.158 4.625 2.237 1.617 H4 H3I 59 H3I HAY1 H23 H 0 0 N N N N N N 12.463 -22.702 -14.288 3.053 0.620 0.601 HAY1 H3I 60 H3I HAH1 H25 H 0 0 N N N N N N 11.069 -22.683 -9.399 -2.142 -5.153 -0.342 HAH1 H3I 61 H3I HAJ1 H26 H 0 0 N N N N N N 7.953 -20.276 -11.686 -3.977 -4.369 0.041 HAJ1 H3I 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H3I N CA SING N N 1 H3I CA C SING N N 2 H3I CA CB SING N N 3 H3I CAL NAT DOUB Y N 4 H3I CAL NAV SING Y N 5 H3I CAN NAX SING Y N 6 H3I CAN NBU DOUB Y N 7 H3I CAQ NBS SING N N 8 H3I CAQ CB SING N N 9 H3I CAR CBP SING N N 10 H3I CAR NBS SING N N 11 H3I C O DOUB N N 12 H3I C OXT SING N N 13 H3I NAT CBE SING Y N 14 H3I NAV CBI DOUB Y N 15 H3I NAX CBG SING Y N 16 H3I NAY CBC SING N N 17 H3I NAY CBE SING N N 18 H3I OAD CBC DOUB N N 19 H3I OAH CBL SING N N 20 H3I OAJ CBN SING N N 21 H3I CBC NBS SING N N 22 H3I CBE CBG DOUB Y N 23 H3I CBG CBI SING Y N 24 H3I CBI NBU SING Y N 25 H3I CBL CBN SING N N 26 H3I CBL CBP SING N N 27 H3I CBN CBR SING N N 28 H3I CBP OBA SING N N 29 H3I CBR OBA SING N N 30 H3I CBR N9 SING N N 31 H3I N1 C2 DOUB Y N 32 H3I N1 C6 SING Y N 33 H3I C2 N3 SING Y N 34 H3I N3 C4 DOUB Y N 35 H3I C4 C5 SING Y N 36 H3I C4 N9 SING Y N 37 H3I C5 C6 DOUB Y N 38 H3I C5 N7 SING Y N 39 H3I C6 N6 SING N N 40 H3I N7 C8 DOUB Y N 41 H3I C8 N9 SING Y N 42 H3I C8 H81 SING N N 43 H3I N H2 SING N N 44 H3I N H SING N N 45 H3I CA HA SING N N 46 H3I CB HB3 SING N N 47 H3I CB HB2 SING N N 48 H3I OXT H3 SING N N 49 H3I C2 H21 SING N N 50 H3I CAL HAL1 SING N N 51 H3I CAN HAN1 SING N N 52 H3I CAQ HAQ2 SING N N 53 H3I CAQ HAQ1 SING N N 54 H3I CAR HAR1 SING N N 55 H3I CAR HAR2 SING N N 56 H3I CBL HBL1 SING N N 57 H3I CBN HBN1 SING N N 58 H3I CBP HBP1 SING N N 59 H3I CBR HBR1 SING N N 60 H3I N6 H61 SING N N 61 H3I N6 H62 SING N N 62 H3I NAX H4 SING N N 63 H3I NAY HAY1 SING N N 64 H3I OAH HAH1 SING N N 65 H3I OAJ HAJ1 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H3I InChI InChI 1.06 "InChI=1S/C20H24N12O6/c21-8(19(35)36)1-2-31(20(37)30-16-11-15(25-4-23-11)26-6-27-16)3-9-12(33)13(34)18(38-9)32-7-29-10-14(22)24-5-28-17(10)32/h4-9,12-13,18,33-34H,1-3,21H2,(H,35,36)(H2,22,24,28)(H2,23,25,26,27,30,37)/t8-,9+,12-,13?,18+/m0/s1" H3I InChIKey InChI 1.06 OORXHLVXCSLOBF-WXSQNYJTSA-N H3I SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(C[C@H]1O[C@H]([C@@H](O)[C@H]1O)n2cnc3c(N)ncnc23)C(=O)Nc4ncnc5nc[nH]c45)C(O)=O" H3I SMILES CACTVS 3.385 "N[CH](CCN(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(=O)Nc4ncnc5nc[nH]c45)C(O)=O" H3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1[nH]c2c(n1)ncnc2NC(=O)N(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" H3I SMILES "OpenEye OEToolkits" 2.0.7 "c1[nH]c2c(n1)ncnc2NC(=O)N(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id H3I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(7~{H}-purin-6-ylcarbamoyl)amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H3I "Create component" 2023-07-21 PDBE H3I "Initial release" 2023-11-08 RCSB #