data_H58 # _chem_comp.id H58 _chem_comp.name "(3alpha)-[3-({2-[(2S,3S,4R,5S)-3,4-dihydroxy-5-methylpyrrolidin-2-yl]ethyl}amino)propyl]ferrocene" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 Fe N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S,3S,4R,5S)-2-[N-(propylferrocene)]aminoethyl-5-methylpyrrolidine-3,4-diol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-03-08 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.309 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H58 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4JFW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H58 OAP OAP O 0 1 N N N -6.556 4.092 3.003 9.770 -0.633 -0.227 OAP H58 1 H58 CAC CAC C 0 1 N N R -6.674 4.496 4.357 8.682 0.276 -0.405 CAC H58 2 H58 CAB CAB C 0 1 N N S -6.371 3.331 5.311 8.155 0.758 0.964 CAB H58 3 H58 CAO CAO C 0 1 N N N -5.081 2.576 5.053 8.498 -0.259 2.055 CAO H58 4 H58 NAA NAA N 0 1 N N N -7.578 2.480 5.280 6.683 0.853 0.785 NAA H58 5 H58 CAE CAE C 0 1 N N S -8.748 3.368 5.083 6.338 -0.333 -0.040 CAE H58 6 H58 CAD CAD C 0 1 N N S -8.106 4.754 4.817 7.487 -0.441 -1.066 CAD H58 7 H58 OAQ OAQ O 0 1 N N N -8.820 5.561 3.887 7.805 -1.812 -1.312 OAQ H58 8 H58 CAF CAF C 0 1 N N N -9.664 3.280 6.299 5.003 -0.114 -0.756 CAF H58 9 H58 CAG CAG C 0 1 N N N -11.033 3.934 6.131 3.876 -0.051 0.277 CAG H58 10 H58 NAH NAH N 0 1 N N N -11.972 3.676 7.264 2.594 0.159 -0.410 NAH H58 11 H58 CAN CAN C 0 1 N N N -14.529 0.899 8.177 -0.983 0.513 0.803 CAN H58 12 H58 CAQ CAQ C 0 1 N N N -13.681 2.172 8.288 0.171 0.444 -0.199 CAQ H58 13 H58 CAP CAP C 0 1 N N N -12.439 2.274 7.418 1.486 0.225 0.552 CAP H58 14 H58 CAJ CAJ C 0 1 N N N -15.964 0.882 8.650 -2.278 0.728 0.063 CAJ H58 15 H58 CAK CAK C 0 1 N N N -16.458 1.232 9.940 -3.108 -0.240 -0.305 CAK H58 16 H58 CAL CAL C 0 1 N N S -17.855 1.004 9.971 -4.268 0.423 -1.013 CAL H58 17 H58 CAM CAM C 0 1 N N N -18.239 0.507 8.721 -3.955 1.902 -0.981 CAM H58 18 H58 CAI CAI C 0 1 N N N -17.085 0.425 7.909 -2.798 2.036 -0.344 CAI H58 19 H58 CBJ CBJ C 0 1 N N N -16.620 4.255 8.326 -7.891 -1.779 0.825 CBJ H58 20 H58 CBI CBI C 0 1 N N N -17.774 4.313 9.127 -9.053 -1.912 0.197 CBI H58 21 H58 CBM CBM C 0 1 N N N -18.845 3.844 8.361 -9.574 -0.605 -0.209 CBM H58 22 H58 CBL CBL C 0 1 N N N -18.371 3.503 7.098 -8.745 0.364 0.161 CBL H58 23 H58 CBK CBK C 0 1 N N N -16.993 3.753 7.069 -7.584 -0.299 0.868 CBK H58 24 H58 FE FE FE 0 0 N N N -17.423 2.371 8.517 -5.926 0.062 -0.072 FE H58 25 H58 H1 H1 H 0 1 N N N -5.640 3.951 2.793 10.550 -0.237 0.185 H1 H58 26 H58 H2 H2 H 0 1 N N N -6.033 5.359 4.590 8.996 1.126 -1.012 H2 H58 27 H58 H3 H3 H 0 1 N N N -6.296 3.760 6.321 8.573 1.734 1.210 H3 H58 28 H58 H4 H4 H 0 1 N N N -4.973 1.770 5.794 9.580 -0.378 2.113 H4 H58 29 H58 H5 H5 H 0 1 N N N -5.105 2.143 4.042 8.119 0.096 3.013 H5 H58 30 H58 H6 H6 H 0 1 N N N -4.229 3.267 5.136 8.039 -1.218 1.815 H6 H58 31 H58 H7 H7 H 0 1 N N N -7.515 1.827 4.526 6.209 0.825 1.675 H7 H58 32 H58 H9 H9 H 0 1 N N N -9.305 3.056 4.187 6.294 -1.228 0.580 H9 H58 33 H58 H10 H10 H 0 1 N N N -8.055 5.281 5.781 7.213 0.058 -1.995 H10 H58 34 H58 H11 H11 H 0 1 N N N -9.705 5.702 4.203 8.550 -1.941 -1.915 H11 H58 35 H58 H12 H12 H 0 1 N N N -9.821 2.216 6.530 5.039 0.822 -1.313 H12 H58 36 H58 H13 H13 H 0 1 N N N -9.156 3.767 7.144 4.820 -0.940 -1.443 H13 H58 37 H58 H14 H14 H 0 1 N N N -10.889 5.021 6.042 3.840 -0.987 0.834 H14 H58 38 H58 H15 H15 H 0 1 N N N -11.490 3.548 5.208 4.059 0.775 0.964 H15 H58 39 H58 H16 H16 H 0 1 N N N -11.509 3.939 8.111 2.624 0.987 -0.986 H16 H58 40 H58 H18 H18 H 0 1 N N N -14.547 0.626 7.112 -1.035 -0.421 1.362 H18 H58 41 H58 H19 H19 H 0 1 N N N -14.331 3.022 8.033 0.005 -0.384 -0.889 H19 H58 42 H58 H20 H20 H 0 1 N N N -12.670 1.867 6.423 1.434 -0.709 1.111 H20 H58 43 H58 H21 H21 H 0 1 N N N -11.635 1.682 7.879 1.653 1.053 1.241 H21 H58 44 H58 H22 H22 H 0 1 N N N -15.864 1.609 10.759 -2.979 -1.298 -0.131 H22 H58 45 H58 H23 H23 H 0 1 N N N -18.539 1.388 10.742 -4.334 0.072 -2.042 H23 H58 46 H58 H24 H24 H 0 1 N N N -19.242 0.234 8.428 -4.559 2.697 -1.392 H24 H58 47 H58 H25 H25 H 0 1 N N N -17.060 0.071 6.889 -2.306 2.979 -0.155 H25 H58 48 H58 H26 H26 H 0 1 N N N -15.623 4.545 8.625 -7.285 -2.575 1.232 H26 H58 49 H58 H27 H27 H 0 1 N N N -17.824 4.658 10.149 -9.546 -2.855 0.010 H27 H58 50 H58 H28 H28 H 0 1 N N N -19.869 3.760 8.694 -10.503 -0.450 -0.737 H28 H58 51 H58 H29 H29 H 0 1 N N N -18.962 3.114 6.282 -8.876 1.423 -0.008 H29 H58 52 H58 H30 H30 H 0 1 N N N -16.296 3.379 6.305 -7.520 0.051 1.899 H30 H58 53 H58 H291 H291 H 0 0 N N N -14.002 0.120 8.747 -0.817 1.341 1.492 ? ? 54 H58 H301 H301 H 0 0 N N N -13.356 2.260 9.335 0.223 1.378 -0.758 ? ? 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H58 OAP CAC SING N N 1 H58 OAP H1 SING N N 2 H58 CAC CAD SING N N 3 H58 CAC CAB SING N N 4 H58 CAC H2 SING N N 5 H58 CAB H3 SING N N 6 H58 CAO CAB SING N N 7 H58 CAO H4 SING N N 8 H58 CAO H5 SING N N 9 H58 CAO H6 SING N N 10 H58 NAA CAB SING N N 11 H58 NAA H7 SING N N 12 H58 CAE NAA SING N N 13 H58 CAE CAF SING N N 14 H58 CAE H9 SING N N 15 H58 CAD CAE SING N N 16 H58 CAD H10 SING N N 17 H58 OAQ CAD SING N N 18 H58 OAQ H11 SING N N 19 H58 CAF H12 SING N N 20 H58 CAF H13 SING N N 21 H58 CAG CAF SING N N 22 H58 CAG NAH SING N N 23 H58 CAG H14 SING N N 24 H58 CAG H15 SING N N 25 H58 NAH CAP SING N N 26 H58 NAH H16 SING N N 27 H58 CAN CAQ SING N N 28 H58 CAN CAJ SING N N 29 H58 CAN H18 SING N N 30 H58 CAQ H19 SING N N 31 H58 CAP CAQ SING N N 32 H58 CAP H20 SING N N 33 H58 CAP H21 SING N N 34 H58 CAJ CAK DOUB N N 35 H58 CAK CAL SING N N 36 H58 CAK H22 SING N N 37 H58 CAL H23 SING N N 38 H58 CAM CAL SING N N 39 H58 CAM H24 SING N N 40 H58 CAI CAJ SING N N 41 H58 CAI CAM DOUB N N 42 H58 CAI H25 SING N N 43 H58 CBJ CBI DOUB N N 44 H58 CBJ H26 SING N N 45 H58 CBI H27 SING N N 46 H58 CBM CBI SING N N 47 H58 CBM H28 SING N N 48 H58 CBL CBM DOUB N N 49 H58 CBL H29 SING N N 50 H58 CBK CBL SING N N 51 H58 CBK CBJ SING N N 52 H58 CBK H30 SING N N 53 H58 FE CAL SING N N 54 H58 FE CBK SING N N 55 H58 CAN H291 SING N N 56 H58 CAQ H301 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H58 SMILES ACDLabs 12.01 "[Fe](C1C=CC=C1)C2C=CC(=C2)CCCNCCC3NC(C(O)C3O)C" H58 InChI InChI 1.03 "InChI=1S/C15H25N2O2.C5H5.Fe/c1-11-14(18)15(19)13(17-11)8-10-16-9-4-7-12-5-2-3-6-12;1-2-4-5-3-1;/h2-3,5-6,11,13-19H,4,7-10H2,1H3;1-5H;/t11-,13-,14+,15-;;/m0../s1" H58 InChIKey InChI 1.03 UONBANSHCODUCX-RDDIDZLJSA-N H58 SMILES_CANONICAL CACTVS 3.370 "C[C@@H]1N[C@@H](CCNCCCC2=C[C@@H]([Fe]C3C=CC=C3)C=C2)[C@H](O)[C@@H]1O" H58 SMILES CACTVS 3.370 "C[CH]1N[CH](CCNCCCC2=C[CH]([Fe]C3C=CC=C3)C=C2)[CH](O)[CH]1O" H58 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(N1)CCNCCCC2=CC(C=C2)[Fe]C3C=CC=C3)O)O" H58 SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(N1)CCNCCCC2=CC(C=C2)[Fe]C3C=CC=C3)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier H58 "SYSTEMATIC NAME" ACDLabs 12.01 "(3alpha)-[3-({2-[(2S,3S,4R,5S)-3,4-dihydroxy-5-methylpyrrolidin-2-yl]ethyl}amino)propyl]ferrocene" H58 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "cyclopenta-2,4-dien-1-yl-[3-[3-[2-[5-methyl-3,4-bis(oxidanyl)pyrrolidin-2-yl]ethylamino]propyl]cyclopenta-2,4-dien-1-yl]iron" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H58 "Create component" 2013-03-08 RCSB H58 "Other modification" 2014-06-26 RCSB H58 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id H58 _pdbx_chem_comp_synonyms.name "(2S,3S,4R,5S)-2-[N-(propylferrocene)]aminoethyl-5-methylpyrrolidine-3,4-diol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##