data_HB1 # _chem_comp.id HB1 _chem_comp.name RUTHENIUM-PYRIDOCARBAZOLE-1 _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H13 N3 O3 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-08-18 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.438 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HB1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2BZH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HB1 O3 O3 O 0 1 N N N -19.178 -33.893 -4.938 -19.178 -33.893 -4.938 O3 HB1 1 HB1 C4 C4 C 0 1 N N N -20.250 -33.709 -4.720 -20.250 -33.709 -4.720 C4 HB1 2 HB1 RU1 RU1 RU 0 0 N N N -22.028 -33.350 -4.532 -22.028 -33.350 -4.532 RU1 HB1 3 HB1 C5 C5 C 0 1 N N R -23.705 -31.890 -4.850 -23.705 -31.890 -4.850 C5 HB1 4 HB1 C6 C6 C 0 1 N N N -22.472 -31.363 -5.355 -22.472 -31.363 -5.355 C6 HB1 5 HB1 C7 C7 C 0 1 N N N -22.016 -32.211 -6.370 -22.016 -32.211 -6.370 C7 HB1 6 HB1 C8 C8 C 0 1 N N N -22.944 -33.270 -6.529 -22.944 -33.270 -6.529 C8 HB1 7 HB1 C9 C9 C 0 1 N N N -23.988 -33.064 -5.590 -23.988 -33.064 -5.590 C9 HB1 8 HB1 N3 N3 N 0 1 Y N N -21.838 -32.851 -2.455 -21.838 -32.851 -2.455 N3 HB1 9 HB1 C2 C2 C 0 1 Y N N -21.520 -31.660 -1.871 -21.520 -31.660 -1.871 C2 HB1 10 HB1 N1 N1 N 0 1 Y N N -22.523 -35.179 -3.651 -22.523 -35.179 -3.651 N1 HB1 11 HB1 C11 C11 C 0 1 Y N N -22.937 -36.447 -3.937 -22.937 -36.447 -3.937 C11 HB1 12 HB1 C16 C16 C 0 1 Y N N -23.206 -37.177 -2.729 -23.206 -37.177 -2.729 C16 HB1 13 HB1 C15 C15 C 0 1 Y N N -23.624 -38.505 -2.798 -23.624 -38.505 -2.798 C15 HB1 14 HB1 C14 C14 C 0 1 Y N N -23.748 -39.064 -4.057 -23.748 -39.064 -4.057 C14 HB1 15 HB1 C13 C13 C 0 1 Y N N -23.487 -38.332 -5.224 -23.487 -38.332 -5.224 C13 HB1 16 HB1 C12 C12 C 0 1 Y N N -23.086 -37.015 -5.185 -23.086 -37.015 -5.185 C12 HB1 17 HB1 C17 C17 C 0 1 Y N N -22.944 -36.274 -1.660 -22.944 -36.274 -1.660 C17 HB1 18 HB1 C10 C10 C 0 1 Y N N -22.557 -35.073 -2.322 -22.557 -35.073 -2.322 C10 HB1 19 HB1 C18 C18 C 0 1 Y N N -22.968 -36.208 -0.259 -22.968 -36.208 -0.259 C18 HB1 20 HB1 C19 C19 C 0 1 N N N -23.361 -37.239 0.750 -23.361 -37.239 0.750 C19 HB1 21 HB1 O1 O1 O 0 1 N N N -23.725 -38.388 0.588 -23.725 -38.388 0.588 O1 HB1 22 HB1 C21 C21 C 0 1 Y N N -22.634 -35.021 0.426 -22.634 -35.021 0.426 C21 HB1 23 HB1 C20 C20 C 0 1 N N N -22.809 -35.261 1.863 -22.809 -35.261 1.863 C20 HB1 24 HB1 N2 N2 N 0 1 N N N -23.223 -36.594 1.983 -23.223 -36.594 1.983 N2 HB1 25 HB1 O2 O2 O 0 1 N N N -22.643 -34.516 2.807 -22.643 -34.516 2.807 O2 HB1 26 HB1 C22 C22 C 0 1 Y N N -22.238 -33.799 -0.240 -22.238 -33.799 -0.240 C22 HB1 27 HB1 C3 C3 C 0 1 Y N N -22.192 -33.881 -1.651 -22.192 -33.881 -1.651 C3 HB1 28 HB1 C23 C23 C 0 1 Y N N -21.859 -32.549 0.350 -21.859 -32.549 0.350 C23 HB1 29 HB1 C1 C1 C 0 1 Y N N -21.514 -31.494 -0.471 -21.514 -31.494 -0.471 C1 HB1 30 HB1 H6C1 H6C1 H 0 0 N N N -21.880 -30.576 -4.864 -21.880 -30.576 -4.864 H6C1 HB1 31 HB1 H7C1 H7C1 H 0 0 N N N -21.016 -32.177 -6.827 -21.016 -32.177 -6.827 H7C1 HB1 32 HB1 H8C1 H8C1 H 0 0 N N N -22.770 -34.194 -7.100 -22.770 -34.194 -7.100 H8C1 HB1 33 HB1 H9C1 H9C1 H 0 0 N N N -24.714 -33.833 -5.288 -24.715 -33.833 -5.288 H9C1 HB1 34 HB1 H2 H2 H 0 1 N N N -21.265 -30.819 -2.500 -21.265 -30.819 -2.500 H2 HB1 35 HB1 H1 H1 H 0 1 N N N -21.563 -35.459 -3.639 -21.563 -35.458 -3.639 H1 HB1 36 HB1 H15 H15 H 0 1 N N N -23.842 -39.073 -1.906 -23.842 -39.074 -1.906 H15 HB1 37 HB1 H14 H14 H 0 1 N N N -24.055 -40.096 -4.144 -24.055 -40.096 -4.144 H14 HB1 38 HB1 H13 H13 H 0 1 N N N -23.604 -38.816 -6.183 -23.604 -38.816 -6.183 H13 HB1 39 HB1 H12 H12 H 0 1 N N N -22.897 -36.454 -6.088 -22.897 -36.454 -6.088 H12 HB1 40 HB1 HB HB H 0 1 N N N -23.402 -37.039 2.861 -23.402 -37.039 2.861 HB HB1 41 HB1 H23 H23 H 0 1 N N N -21.843 -32.434 1.424 -21.844 -32.434 1.424 H23 HB1 42 HB1 HA HA H 0 1 N N N -21.240 -30.542 -0.041 -21.240 -30.542 -0.041 HA HB1 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HB1 O3 C4 TRIP N N 1 HB1 C4 RU1 SING N N 2 HB1 RU1 C5 SING N N 3 HB1 RU1 C6 SING N N 4 HB1 RU1 C7 SING N N 5 HB1 RU1 C8 SING N N 6 HB1 RU1 C9 SING N N 7 HB1 RU1 N3 SING N N 8 HB1 RU1 N1 SING N N 9 HB1 C5 C6 DOUB N N 10 HB1 C5 C9 DOUB N N 11 HB1 C6 C7 SING N N 12 HB1 C6 H6C1 SING N N 13 HB1 C7 C8 DOUB N N 14 HB1 C7 H7C1 SING N N 15 HB1 C8 C9 SING N N 16 HB1 C8 H8C1 SING N N 17 HB1 C9 H9C1 SING N N 18 HB1 N3 C2 DOUB Y N 19 HB1 N3 C3 SING Y N 20 HB1 C2 C1 SING Y N 21 HB1 C2 H2 SING N N 22 HB1 N1 C11 SING Y N 23 HB1 N1 C10 SING Y N 24 HB1 N1 H1 SING N N 25 HB1 C11 C16 SING Y N 26 HB1 C11 C12 DOUB Y N 27 HB1 C16 C15 DOUB Y N 28 HB1 C16 C17 SING Y N 29 HB1 C15 C14 SING Y N 30 HB1 C15 H15 SING N N 31 HB1 C14 C13 DOUB Y N 32 HB1 C14 H14 SING N N 33 HB1 C13 C12 SING Y N 34 HB1 C13 H13 SING N N 35 HB1 C12 H12 SING N N 36 HB1 C17 C10 SING Y N 37 HB1 C17 C18 DOUB Y N 38 HB1 C10 C3 DOUB Y N 39 HB1 C18 C19 SING N N 40 HB1 C18 C21 SING Y N 41 HB1 C19 O1 DOUB N N 42 HB1 C19 N2 SING N N 43 HB1 C21 C20 SING N N 44 HB1 C21 C22 DOUB Y N 45 HB1 C20 N2 SING N N 46 HB1 C20 O2 DOUB N N 47 HB1 N2 HB SING N N 48 HB1 C22 C3 SING Y N 49 HB1 C22 C23 SING Y N 50 HB1 C23 C1 DOUB Y N 51 HB1 C23 H23 SING N N 52 HB1 C1 HA SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HB1 InChI InChI 1.06 "InChI=1S/C17H9N3O2.C5H4.CO.Ru/c21-16-12-9-5-3-7-18-14(9)15-11(13(12)17(22)20-16)8-4-1-2-6-10(8)19-15;1-2-4-5-3-1;1-2;/h1-7,19H,(H,20,21,22);1-4H;;" HB1 InChIKey InChI 1.06 HQDDSWVENMEGOZ-UHFFFAOYSA-N HB1 SMILES_CANONICAL CACTVS 3.385 "[Ru].O=C1NC(=O)c2c1c3cccnc3c4[nH]c5ccccc5c24.[C-]#[O+].C6=C[CH]=[C@@]=[CH]6" HB1 SMILES CACTVS 3.385 "[Ru].O=C1NC(=O)c2c1c3cccnc3c4[nH]c5ccccc5c24.[C-]#[O+].C6=C[CH]=[C]=[CH]6" HB1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3c4c(c5c6c3[NH]2[Ru]7891([N]6=CC=C5)([CH]2=[CH]7[CH]8=C9=[CH]12)C#O)C(=O)NC4=O" HB1 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3c4c(c5c6c3[NH]2[Ru]7891([N]6=CC=C5)([CH]2=[CH]7[CH]8=C9=[CH]12)C#O)C(=O)NC4=O" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HB1 "Create component" 2005-08-18 EBI HB1 "Modify descriptor" 2023-09-23 RCSB #