data_HZD # _chem_comp.id HZD _chem_comp.name "4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H50 N6 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2018-07-31 _chem_comp.pdbx_modified_date 2019-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 750.970 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HZD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6E8U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HZD C10 C1 C 0 1 N N N 10.077 -6.945 -26.522 5.473 -2.309 0.305 C10 HZD 1 HZD C01 C2 C 0 1 N N N 13.411 -15.691 -28.375 8.572 4.845 2.465 C01 HZD 2 HZD C03 C3 C 0 1 Y N N 11.469 -14.400 -27.353 7.268 2.898 1.959 C03 HZD 3 HZD C04 C4 C 0 1 Y N N 10.706 -13.139 -27.202 6.858 1.842 1.148 C04 HZD 4 HZD C05 C5 C 0 1 Y N N 11.143 -11.916 -27.887 7.415 1.677 -0.088 C05 HZD 5 HZD C06 C6 C 0 1 N N N 10.489 -10.731 -27.822 6.987 0.543 -0.984 C06 HZD 6 HZD C07 C7 C 0 1 Y N N 9.261 -10.477 -26.922 7.930 -0.620 -0.807 C07 HZD 7 HZD C09 C8 C 0 1 N N N 9.326 -7.966 -27.360 6.611 -1.560 0.951 C09 HZD 8 HZD C13 C9 C 0 1 N N N 11.542 -6.569 -24.476 3.194 -3.171 0.327 C13 HZD 9 HZD C14 C10 C 0 1 N N N 10.753 -6.391 -23.166 1.988 -3.177 1.268 C14 HZD 10 HZD C16 C11 C 0 1 N N N 8.527 -5.951 -22.500 0.380 -1.734 2.306 C16 HZD 11 HZD C17 C12 C 0 1 N N N 7.921 -4.606 -22.069 -0.041 -0.267 2.417 C17 HZD 12 HZD C19 C13 C 0 1 N N N 9.167 -2.852 -21.138 -0.915 1.561 1.137 C19 HZD 13 HZD C20 C14 C 0 1 N N N 9.922 -1.617 -21.580 -1.377 1.946 -0.270 C20 HZD 14 HZD C22 C15 C 0 1 N N N 9.501 0.600 -22.100 -3.058 1.476 -1.913 C22 HZD 15 HZD C23 C16 C 0 1 N N N 8.397 1.494 -22.651 -4.297 0.615 -2.170 C23 HZD 16 HZD C25 C17 C 0 1 N N N 6.967 2.840 -21.008 -6.552 0.373 -1.280 C25 HZD 17 HZD C27 C18 C 0 1 N N N 5.824 2.808 -19.956 -7.646 0.768 -0.322 C27 HZD 18 HZD C28 C19 C 0 1 N N N 4.911 4.070 -19.982 -8.885 -0.092 -0.578 C28 HZD 19 HZD C29 C20 C 0 1 N N N 3.814 3.852 -18.902 -9.995 0.310 0.394 C29 HZD 20 HZD C30 C21 C 0 1 N N N 2.643 4.891 -18.889 -11.234 -0.550 0.138 C30 HZD 21 HZD C31 C22 C 0 1 N N R 2.584 5.884 -17.603 -12.345 -0.148 1.110 C31 HZD 22 HZD C33 C23 C 0 1 N N N 0.892 7.035 -16.110 -14.618 1.286 1.436 C33 HZD 23 HZD C34 C24 C 0 1 N N S 1.880 6.088 -15.200 -14.899 -0.181 1.058 C34 HZD 24 HZD C36 C25 C 0 1 N N N 1.531 3.774 -15.136 -14.774 -0.941 -1.100 C36 HZD 25 HZD C39 C26 C 0 1 N N R 2.864 5.280 -16.302 -13.611 -0.994 0.873 C39 HZD 26 HZD C40 C27 C 0 1 Y N N 7.672 -9.229 -25.821 8.689 -2.533 0.098 C40 HZD 27 HZD C41 C28 C 0 1 Y N N 7.297 -10.489 -25.373 9.704 -2.337 -0.846 C41 HZD 28 HZD C43 C29 C 0 1 Y N N 6.204 -10.620 -24.500 10.753 -3.247 -0.948 C43 HZD 29 HZD C44 C30 C 0 1 Y N N 5.532 -9.470 -24.067 10.795 -4.345 -0.118 C44 HZD 30 HZD C45 C31 C 0 1 Y N N 5.922 -8.204 -24.531 9.793 -4.545 0.820 C45 HZD 31 HZD C46 C32 C 0 1 Y N N 6.998 -8.051 -25.404 8.759 -3.665 0.934 C46 HZD 32 HZD C47 C33 C 0 1 Y N N 12.381 -11.973 -28.764 8.398 2.595 -0.503 C47 HZD 33 HZD C48 C34 C 0 1 Y N N 13.102 -13.190 -28.923 8.768 3.647 0.373 C48 HZD 34 HZD C49 C35 C 0 1 Y N N 14.238 -13.233 -29.742 9.750 4.564 -0.039 C49 HZD 35 HZD C50 C36 C 0 1 Y N N 14.706 -12.087 -30.417 10.327 4.432 -1.265 C50 HZD 36 HZD C51 C37 C 0 1 Y N N 13.978 -10.866 -30.259 9.961 3.398 -2.124 C51 HZD 37 HZD C52 C38 C 0 1 Y N N 12.825 -10.826 -29.440 9.014 2.490 -1.760 C52 HZD 38 HZD N02 N1 N 1 1 Y N N 12.644 -14.425 -28.209 8.181 3.755 1.569 N02 HZD 39 HZD N08 N2 N 1 1 Y N N 8.799 -9.182 -26.698 7.766 -1.554 0.050 N08 HZD 40 HZD N12 N3 N 0 1 N N N 10.764 -7.454 -25.356 4.300 -2.443 0.955 N12 HZD 41 HZD N24 N4 N 0 1 N N N 7.341 1.569 -21.642 -5.360 1.000 -1.238 N24 HZD 42 HZD N35 N5 N 0 1 N N N 1.169 5.224 -14.566 -15.541 -0.226 -0.265 N35 HZD 43 HZD N38 N6 N 0 1 N N N 2.577 3.958 -16.197 -13.655 -1.416 -0.535 N38 HZD 44 HZD O11 O1 O 0 1 N N N 10.068 -5.795 -26.841 5.612 -2.785 -0.801 O11 HZD 45 HZD O15 O2 O 0 1 N N N 9.541 -5.727 -23.492 1.512 -1.840 1.440 O15 HZD 46 HZD O18 O3 O 0 1 N N N 8.833 -3.556 -22.302 -0.495 0.195 1.143 O18 HZD 47 HZD O21 O4 O 0 1 N N N 8.945 -0.670 -21.928 -2.542 1.191 -0.611 O21 HZD 48 HZD O26 O5 O 0 1 N N N 7.515 3.862 -21.285 -6.745 -0.511 -2.088 O26 HZD 49 HZD O37 O6 O 0 1 N N N 1.062 2.741 -14.790 -15.066 -1.140 -2.263 O37 HZD 50 HZD S32 S1 S 0 1 N N N 0.993 6.500 -17.493 -12.928 1.561 0.764 S32 HZD 51 HZD S42 S2 S 0 1 Y N N 8.303 -11.616 -26.115 9.345 -0.858 -1.731 S42 HZD 52 HZD H1 H1 H 0 1 N N N 12.936 -16.488 -27.784 7.942 5.715 2.276 H1 HZD 53 HZD H2 H2 H 0 1 N N N 13.420 -15.978 -29.437 8.450 4.527 3.500 H2 HZD 54 HZD H3 H3 H 0 1 N N N 14.444 -15.542 -28.027 9.615 5.107 2.285 H3 HZD 55 HZD H4 H4 H 0 1 N N N 11.155 -15.292 -26.832 6.819 3.017 2.934 H4 HZD 56 HZD H5 H5 H 0 1 N N N 9.821 -13.119 -26.583 6.102 1.155 1.496 H5 HZD 57 HZD H6 H6 H 0 1 N N N 11.242 -9.990 -27.517 5.976 0.234 -0.722 H6 HZD 58 HZD H7 H7 H 0 1 N N N 10.157 -10.515 -28.848 7.009 0.873 -2.023 H7 HZD 59 HZD H8 H8 H 0 1 N N N 10.011 -8.300 -28.153 6.303 -0.535 1.154 H8 HZD 60 HZD H9 H9 H 0 1 N N N 8.468 -7.446 -27.812 6.882 -2.049 1.887 H9 HZD 61 HZD H10 H10 H 0 1 N N N 12.522 -7.021 -24.263 3.503 -4.196 0.125 H10 HZD 62 HZD H11 H11 H 0 1 N N N 11.686 -5.592 -24.961 2.923 -2.682 -0.609 H11 HZD 63 HZD H12 H12 H 0 1 N N N 10.536 -7.373 -22.720 1.197 -3.792 0.840 H12 HZD 64 HZD H13 H13 H 0 1 N N N 11.335 -5.786 -22.455 2.283 -3.585 2.234 H13 HZD 65 HZD H14 H14 H 0 1 N N N 7.737 -6.590 -22.922 0.642 -2.112 3.295 H14 HZD 66 HZD H15 H15 H 0 1 N N N 8.973 -6.448 -21.626 -0.444 -2.319 1.900 H15 HZD 67 HZD H16 H16 H 0 1 N N N 7.002 -4.422 -22.645 -0.847 -0.175 3.145 H16 HZD 68 HZD H17 H17 H 0 1 N N N 7.680 -4.645 -20.996 0.810 0.332 2.739 H17 HZD 69 HZD H18 H18 H 0 1 N N N 8.255 -2.565 -20.594 -0.081 2.198 1.432 H18 HZD 70 HZD H19 H19 H 0 1 N N N 9.802 -3.472 -20.488 -1.738 1.692 1.839 H19 HZD 71 HZD H20 H20 H 0 1 N N N 10.557 -1.848 -22.448 -1.613 3.009 -0.297 H20 HZD 72 HZD H21 H21 H 0 1 N N N 10.547 -1.237 -20.759 -0.583 1.731 -0.985 H21 HZD 73 HZD H22 H22 H 0 1 N N N 10.340 0.553 -22.810 -2.299 1.252 -2.662 H22 HZD 74 HZD H23 H23 H 0 1 N N N 9.858 0.991 -21.136 -3.329 2.530 -1.974 H23 HZD 75 HZD H24 H24 H 0 1 N N N 8.795 2.500 -22.853 -4.639 0.767 -3.194 H24 HZD 76 HZD H25 H25 H 0 1 N N N 7.997 1.065 -23.581 -4.047 -0.435 -2.022 H25 HZD 77 HZD H26 H26 H 0 1 N N N 5.199 1.924 -20.149 -7.305 0.617 0.702 H26 HZD 78 HZD H27 H27 H 0 1 N N N 6.275 2.727 -18.956 -7.896 1.819 -0.470 H27 HZD 79 HZD H28 H28 H 0 1 N N N 5.500 4.969 -19.747 -9.227 0.060 -1.602 H28 HZD 80 HZD H29 H29 H 0 1 N N N 4.449 4.183 -20.974 -8.635 -1.142 -0.430 H29 HZD 81 HZD H30 H30 H 0 1 N N N 3.377 2.855 -19.063 -9.654 0.159 1.418 H30 HZD 82 HZD H31 H31 H 0 1 N N N 4.302 3.883 -17.917 -10.246 1.361 0.246 H31 HZD 83 HZD H32 H32 H 0 1 N N N 2.736 5.514 -19.791 -11.576 -0.399 -0.886 H32 HZD 84 HZD H33 H33 H 0 1 N N N 1.697 4.332 -18.926 -10.984 -1.601 0.286 H33 HZD 85 HZD H34 H34 H 0 1 N N N 3.257 6.734 -17.788 -12.004 -0.238 2.142 H34 HZD 86 HZD H35 H35 H 0 1 N N N 1.226 8.082 -16.078 -15.337 1.952 0.958 H35 HZD 87 HZD H36 H36 H 0 1 N N N -0.144 6.970 -15.747 -14.633 1.416 2.518 H36 HZD 88 HZD H37 H37 H 0 1 N N N 2.510 6.727 -14.564 -15.541 -0.647 1.805 H37 HZD 89 HZD H38 H38 H 0 1 N N N 3.906 5.486 -16.014 -13.612 -1.865 1.528 H38 HZD 90 HZD H39 H39 H 0 1 N N N 5.886 -11.597 -24.167 11.534 -3.092 -1.679 H39 HZD 91 HZD H40 H40 H 0 1 N N N 4.710 -9.558 -23.373 11.609 -5.050 -0.197 H40 HZD 92 HZD H41 H41 H 0 1 N N N 5.377 -7.330 -24.205 9.833 -5.409 1.468 H41 HZD 93 HZD H42 H42 H 0 1 N N N 7.307 -7.075 -25.749 7.988 -3.837 1.671 H42 HZD 94 HZD H43 H43 H 0 1 N N N 14.768 -14.167 -29.859 10.045 5.372 0.614 H43 HZD 95 HZD H44 H44 H 0 1 N N N 15.590 -12.130 -31.036 11.081 5.140 -1.576 H44 HZD 96 HZD H45 H45 H 0 1 N N N 14.309 -9.972 -30.766 10.434 3.316 -3.091 H45 HZD 97 HZD H46 H46 H 0 1 N N N 12.279 -9.900 -29.334 8.738 1.692 -2.434 H46 HZD 98 HZD H47 H47 H 0 1 N N N 10.709 -8.430 -25.143 4.188 -2.058 1.838 H47 HZD 99 HZD H48 H48 H 0 1 N N N 6.861 0.733 -21.377 -5.206 1.707 -0.592 H48 HZD 100 HZD H49 H49 H 0 1 N N N 0.507 5.424 -13.844 -16.385 0.193 -0.496 H49 HZD 101 HZD H50 H50 H 0 1 N N N 2.994 3.227 -16.737 -12.983 -1.952 -0.984 H50 HZD 102 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HZD C50 C51 DOUB Y N 1 HZD C50 C49 SING Y N 2 HZD C51 C52 SING Y N 3 HZD C49 C48 DOUB Y N 4 HZD C52 C47 DOUB Y N 5 HZD C48 C47 SING Y N 6 HZD C48 N02 SING Y N 7 HZD C47 C05 SING Y N 8 HZD C01 N02 SING N N 9 HZD N02 C03 DOUB Y N 10 HZD C05 C06 SING N N 11 HZD C05 C04 DOUB Y N 12 HZD C06 C07 SING N N 13 HZD C09 N08 SING N N 14 HZD C09 C10 SING N N 15 HZD C03 C04 SING Y N 16 HZD C07 N08 DOUB Y N 17 HZD C07 S42 SING Y N 18 HZD O11 C10 DOUB N N 19 HZD N08 C40 SING Y N 20 HZD C10 N12 SING N N 21 HZD S42 C41 SING Y N 22 HZD C40 C46 DOUB Y N 23 HZD C40 C41 SING Y N 24 HZD C46 C45 SING Y N 25 HZD C41 C43 DOUB Y N 26 HZD N12 C13 SING N N 27 HZD C45 C44 DOUB Y N 28 HZD C43 C44 SING Y N 29 HZD C13 C14 SING N N 30 HZD O15 C14 SING N N 31 HZD O15 C16 SING N N 32 HZD C23 C22 SING N N 33 HZD C23 N24 SING N N 34 HZD C16 C17 SING N N 35 HZD O18 C17 SING N N 36 HZD O18 C19 SING N N 37 HZD C22 O21 SING N N 38 HZD O21 C20 SING N N 39 HZD N24 C25 SING N N 40 HZD C20 C19 SING N N 41 HZD O26 C25 DOUB N N 42 HZD C25 C27 SING N N 43 HZD C28 C27 SING N N 44 HZD C28 C29 SING N N 45 HZD C29 C30 SING N N 46 HZD C30 C31 SING N N 47 HZD C31 S32 SING N N 48 HZD C31 C39 SING N N 49 HZD S32 C33 SING N N 50 HZD C39 N38 SING N N 51 HZD C39 C34 SING N N 52 HZD N38 C36 SING N N 53 HZD C33 C34 SING N N 54 HZD C34 N35 SING N N 55 HZD C36 O37 DOUB N N 56 HZD C36 N35 SING N N 57 HZD C01 H1 SING N N 58 HZD C01 H2 SING N N 59 HZD C01 H3 SING N N 60 HZD C03 H4 SING N N 61 HZD C04 H5 SING N N 62 HZD C06 H6 SING N N 63 HZD C06 H7 SING N N 64 HZD C09 H8 SING N N 65 HZD C09 H9 SING N N 66 HZD C13 H10 SING N N 67 HZD C13 H11 SING N N 68 HZD C14 H12 SING N N 69 HZD C14 H13 SING N N 70 HZD C16 H14 SING N N 71 HZD C16 H15 SING N N 72 HZD C17 H16 SING N N 73 HZD C17 H17 SING N N 74 HZD C19 H18 SING N N 75 HZD C19 H19 SING N N 76 HZD C20 H20 SING N N 77 HZD C20 H21 SING N N 78 HZD C22 H22 SING N N 79 HZD C22 H23 SING N N 80 HZD C23 H24 SING N N 81 HZD C23 H25 SING N N 82 HZD C27 H26 SING N N 83 HZD C27 H27 SING N N 84 HZD C28 H28 SING N N 85 HZD C28 H29 SING N N 86 HZD C29 H30 SING N N 87 HZD C29 H31 SING N N 88 HZD C30 H32 SING N N 89 HZD C30 H33 SING N N 90 HZD C31 H34 SING N N 91 HZD C33 H35 SING N N 92 HZD C33 H36 SING N N 93 HZD C34 H37 SING N N 94 HZD C39 H38 SING N N 95 HZD C43 H39 SING N N 96 HZD C44 H40 SING N N 97 HZD C45 H41 SING N N 98 HZD C46 H42 SING N N 99 HZD C49 H43 SING N N 100 HZD C50 H44 SING N N 101 HZD C51 H45 SING N N 102 HZD C52 H46 SING N N 103 HZD N12 H47 SING N N 104 HZD N24 H48 SING N N 105 HZD N35 H49 SING N N 106 HZD N38 H50 SING N N 107 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HZD SMILES ACDLabs 12.01 "C(NCCOCCOCCOCCNC(CCCCC1SCC2NC(=O)NC12)=O)(C[n+]6c(Cc3cc[n+](C)c4c3cccc4)sc5c6cccc5)=O" HZD InChI InChI 1.03 "InChI=1S/C38H48N6O6S2/c1-43-17-14-27(28-8-2-3-9-30(28)43)24-36-44(31-10-4-5-11-32(31)52-36)25-35(46)40-16-19-49-21-23-50-22-20-48-18-15-39-34(45)13-7-6-12-33-37-29(26-51-33)41-38(47)42-37/h2-5,8-11,14,17,29,33,37H,6-7,12-13,15-16,18-26H2,1H3,(H2-2,39,40,41,42,45,46,47)/p+2/t29-,33-,37-/m1/s1" HZD InChIKey InChI 1.03 SGYJIWSWMOUKKZ-GTCKRINLSA-P HZD SMILES_CANONICAL CACTVS 3.385 "C[n+]1ccc(Cc2sc3ccccc3[n+]2CC(=O)NCCOCCOCCOCCNC(=O)CCCC[C@H]4SC[C@H]5NC(=O)N[C@@H]45)c6ccccc16" HZD SMILES CACTVS 3.385 "C[n+]1ccc(Cc2sc3ccccc3[n+]2CC(=O)NCCOCCOCCOCCNC(=O)CCCC[CH]4SC[CH]5NC(=O)N[CH]45)c6ccccc16" HZD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[n+]1ccc(c2c1cccc2)Cc3[n+](c4ccccc4s3)CC(=O)NCCOCCOCCOCCNC(=O)CCCC[C@@H]5[C@H]6[C@@H](CS5)NC(=O)N6" HZD SMILES "OpenEye OEToolkits" 2.0.6 "C[n+]1ccc(c2c1cccc2)Cc3[n+](c4ccccc4s3)CC(=O)NCCOCCOCCOCCNC(=O)CCCCC5C6C(CS5)NC(=O)N6" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HZD "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium" HZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-[(3~{a}~{R},4~{R},6~{a}~{S})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[2-[2-[2-[2-[2-[2-[(1-methylquinolin-1-ium-4-yl)methyl]-1,3-benzothiazol-3-ium-3-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethyl]pentanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HZD "Create component" 2018-07-31 RCSB HZD "Initial release" 2019-04-17 RCSB ##