data_I0M # _chem_comp.id I0M _chem_comp.name "2-[(3S)-1-[[2-[3,5-bis(chloranyl)phenyl]-6-[2-(4-methylpiperazin-4-ium-1-yl)pyrimidin-5-yl]oxy-pyridin-4-yl]methyl]pyrrolidin-1-ium-3-yl]oxyethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H32 Cl2 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2022-02-08 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.487 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I0M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QXZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I0M N1 N1 N 0 1 Y N N 48.632 -33.317 -4.265 -0.614 0.343 -1.629 N1 I0M 1 I0M C4 C1 C 0 1 Y N N 49.765 -33.687 -1.754 2.009 -0.403 -1.937 C4 I0M 2 I0M C5 C2 C 0 1 Y N N 48.556 -33.035 -1.893 1.686 0.830 -1.393 C5 I0M 3 I0M C6 C3 C 0 1 Y N N 47.997 -32.896 -3.156 0.346 1.179 -1.250 C6 I0M 4 I0M C7 C4 C 0 1 Y N N 46.713 -32.185 -3.361 -0.013 2.496 -0.670 C7 I0M 5 I0M C8 C5 C 0 1 Y N N 46.351 -31.135 -2.515 -1.328 2.952 -0.732 C8 I0M 6 I0M C10 C6 C 0 1 Y N N 44.376 -30.708 -3.832 -0.683 4.955 0.414 C10 I0M 7 I0M C15 C7 C 0 1 N N N 50.413 -33.804 -0.417 3.449 -0.815 -2.107 C15 I0M 8 I0M C21 C8 C 0 1 Y N N 48.941 -34.765 -8.879 -4.476 -2.084 -0.004 C21 I0M 9 I0M C26 C9 C 0 1 N N N 49.277 -35.413 -12.385 -7.758 -3.212 1.250 C26 I0M 10 I0M C28 C10 C 0 1 N N N 47.426 -36.704 -11.451 -7.213 -1.110 2.270 C28 I0M 11 I0M C11 C11 C 0 1 Y N N 44.768 -31.720 -4.683 0.623 4.504 0.484 C11 I0M 12 I0M C12 C12 C 0 1 Y N N 45.913 -32.461 -4.468 0.963 3.278 -0.056 C12 I0M 13 I0M C18 C13 C 0 1 Y N N 49.944 -34.518 -6.430 -2.401 -1.804 -1.675 C18 I0M 14 I0M C19 C14 C 0 1 Y N N 48.792 -35.233 -6.671 -3.524 -2.533 -2.051 C19 I0M 15 I0M C2 C15 C 0 1 Y N N 49.809 -33.917 -4.107 -0.336 -0.839 -2.150 C2 I0M 16 I0M C23 C16 C 0 1 Y N N 50.560 -33.956 -7.521 -2.381 -1.223 -0.412 C23 I0M 17 I0M C25 C17 C 0 1 N N N 49.070 -34.336 -11.329 -6.617 -3.032 0.246 C25 I0M 18 I0M C29 C18 C 0 1 N N N 47.193 -35.636 -10.410 -6.068 -0.912 1.275 C29 I0M 19 I0M C3 C19 C 0 1 Y N N 50.421 -34.119 -2.890 0.982 -1.248 -2.320 C3 I0M 20 I0M C30 C20 C 0 1 N N N 48.133 -37.102 -13.780 -9.388 -2.070 2.588 C30 I0M 21 I0M C31 C21 C 0 1 N N N 51.628 -32.469 1.359 5.316 -1.951 -1.048 C31 I0M 22 I0M C32 C22 C 0 1 N N S 52.507 -31.188 1.320 5.828 -2.129 0.398 C32 I0M 23 I0M C33 C23 C 0 1 N N N 52.988 -31.069 -0.113 4.924 -1.223 1.258 C33 I0M 24 I0M C34 C24 C 0 1 N N N 52.297 -32.200 -0.863 3.941 -0.573 0.260 C34 I0M 25 I0M C36 C25 C 0 1 N N N 54.463 -30.217 2.304 7.943 -2.405 1.493 C36 I0M 26 I0M C37 C26 C 0 1 N N N 54.966 -30.035 3.691 9.356 -1.884 1.510 C37 I0M 27 I0M C9 C27 C 0 1 Y N N 45.188 -30.437 -2.752 -1.657 4.179 -0.190 C9 I0M 28 I0M N16 N2 N 1 1 N N N 51.101 -32.526 -0.033 3.905 -1.510 -0.896 N16 I0M 29 I0M N20 N3 N 0 1 Y N N 48.267 -35.359 -7.888 -4.530 -2.650 -1.200 N20 I0M 30 I0M N22 N4 N 0 1 Y N N 50.064 -34.052 -8.755 -3.423 -1.382 0.387 N22 I0M 31 I0M N24 N5 N 0 1 N N N 48.433 -34.902 -10.132 -5.552 -2.224 0.859 N24 I0M 32 I0M N27 N6 N 1 1 N N N 47.982 -36.093 -12.694 -8.281 -1.895 1.638 N27 I0M 33 I0M O17 O1 O 0 1 N N N 50.513 -34.402 -5.166 -1.347 -1.662 -2.523 O17 I0M 34 I0M O35 O2 O 0 1 N N N 53.644 -31.378 2.155 7.190 -1.709 0.497 O35 I0M 35 I0M O38 O3 O 0 1 N N N 55.180 -28.827 4.031 9.686 -1.007 0.748 O38 I0M 36 I0M O39 O4 O 0 1 N N N 55.147 -31.066 4.409 10.250 -2.395 2.372 O39 I0M 37 I0M CL13 CL1 CL 0 0 N N N 43.768 -32.099 -6.050 1.838 5.480 1.249 CL13 I0M 38 I0M CL14 CL2 CL 0 0 N N N 44.733 -29.169 -1.655 -3.294 4.752 -0.273 CL14 I0M 39 I0M H41 H1 H 0 1 N N N 48.049 -32.636 -1.026 2.464 1.512 -1.084 H41 I0M 40 I0M H42 H2 H 0 1 N N N 46.981 -30.871 -1.678 -2.089 2.348 -1.204 H42 I0M 41 I0M H43 H3 H 0 1 N N N 43.468 -30.150 -4.005 -0.945 5.914 0.837 H43 I0M 42 I0M H45 H4 H 0 1 N N N 49.645 -34.038 0.335 3.537 -1.483 -2.964 H45 I0M 43 I0M H46 H5 H 0 1 N N N 51.155 -34.616 -0.448 4.063 0.070 -2.271 H46 I0M 44 I0M H53 H6 H 0 1 N N N 49.996 -36.156 -12.010 -8.554 -3.799 0.793 H53 I0M 45 I0M H52 H7 H 0 1 N N N 49.672 -34.951 -13.302 -7.386 -3.730 2.134 H52 I0M 46 I0M H55 H8 H 0 1 N N N 46.472 -37.200 -11.684 -6.844 -1.639 3.149 H55 I0M 47 I0M H56 H9 H 0 1 N N N 48.138 -37.445 -11.059 -7.606 -0.138 2.570 H56 I0M 48 I0M H44 H10 H 0 1 N N N 46.187 -33.249 -5.153 1.982 2.927 -0.001 H44 I0M 49 I0M H48 H11 H 0 1 N N N 48.295 -35.711 -5.840 -3.574 -2.997 -3.025 H48 I0M 50 I0M H49 H12 H 0 1 N N N 51.483 -33.415 -7.374 -1.525 -0.650 -0.087 H49 I0M 51 I0M H51 H13 H 0 1 N N N 50.045 -33.909 -11.052 -6.218 -4.008 -0.031 H51 I0M 52 I0M H50 H14 H 0 1 N N N 48.427 -33.544 -11.741 -6.991 -2.525 -0.643 H50 I0M 53 I0M H58 H15 H 0 1 N N N 46.432 -34.932 -10.779 -6.433 -0.371 0.403 H58 I0M 54 I0M H57 H16 H 0 1 N N N 46.837 -36.108 -9.482 -5.269 -0.341 1.749 H57 I0M 55 I0M H40 H17 H 0 1 N N N 51.385 -34.601 -2.826 1.202 -2.216 -2.748 H40 I0M 56 I0M H61 H18 H 0 1 N N N 47.161 -37.578 -13.977 -9.028 -2.594 3.473 H61 I0M 57 I0M H59 H19 H 0 1 N N N 48.490 -36.606 -14.695 -9.776 -1.093 2.876 H59 I0M 58 I0M H60 H20 H 0 1 N N N 48.860 -37.867 -13.471 -10.181 -2.652 2.118 H60 I0M 59 I0M H62 H21 H 0 1 N N N 50.813 -32.372 2.091 5.898 -1.190 -1.566 H62 I0M 60 I0M H63 H22 H 0 1 N N N 52.229 -33.359 1.595 5.363 -2.898 -1.587 H63 I0M 61 I0M H64 H23 H 0 1 N N N 51.916 -30.307 1.611 5.730 -3.169 0.709 H64 I0M 62 I0M H66 H24 H 0 1 N N N 54.081 -31.184 -0.164 4.380 -1.818 1.992 H66 I0M 63 I0M H65 H25 H 0 1 N N N 52.702 -30.095 -0.536 5.519 -0.458 1.758 H65 I0M 64 I0M H68 H26 H 0 1 N N N 51.994 -31.871 -1.868 2.951 -0.483 0.706 H68 I0M 65 I0M H67 H27 H 0 1 N N N 52.961 -33.073 -0.947 4.308 0.403 -0.054 H67 I0M 66 I0M H69 H28 H 0 1 N N N 55.326 -30.307 1.627 7.951 -3.471 1.263 H69 I0M 67 I0M H70 H29 H 0 1 N N N 53.871 -29.332 2.027 7.485 -2.248 2.470 H70 I0M 68 I0M H47 H30 H 0 1 N N N 50.442 -31.782 -0.141 3.307 -2.297 -0.694 H47 I0M 69 I0M H54 H31 H 0 1 N N N 47.337 -35.396 -13.009 -8.614 -1.411 0.818 H54 I0M 70 I0M H1 H32 H 0 1 N N N 55.474 -30.805 5.262 11.144 -2.029 2.345 H1 I0M 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I0M C30 N27 SING N N 1 I0M N27 C26 SING N N 2 I0M N27 C28 SING N N 3 I0M C26 C25 SING N N 4 I0M C28 C29 SING N N 5 I0M C25 N24 SING N N 6 I0M C29 N24 SING N N 7 I0M N24 C21 SING N N 8 I0M C21 N22 DOUB Y N 9 I0M C21 N20 SING Y N 10 I0M N22 C23 SING Y N 11 I0M N20 C19 DOUB Y N 12 I0M C23 C18 DOUB Y N 13 I0M C19 C18 SING Y N 14 I0M C18 O17 SING N N 15 I0M CL13 C11 SING N N 16 I0M O17 C2 SING N N 17 I0M C11 C12 DOUB Y N 18 I0M C11 C10 SING Y N 19 I0M C12 C7 SING Y N 20 I0M N1 C2 DOUB Y N 21 I0M N1 C6 SING Y N 22 I0M C2 C3 SING Y N 23 I0M C10 C9 DOUB Y N 24 I0M C7 C6 SING N N 25 I0M C7 C8 DOUB Y N 26 I0M C6 C5 DOUB Y N 27 I0M C3 C4 DOUB Y N 28 I0M C9 C8 SING Y N 29 I0M C9 CL14 SING N N 30 I0M C5 C4 SING Y N 31 I0M C4 C15 SING N N 32 I0M C34 C33 SING N N 33 I0M C34 N16 SING N N 34 I0M C15 N16 SING N N 35 I0M C33 C32 SING N N 36 I0M N16 C31 SING N N 37 I0M C32 C31 SING N N 38 I0M C32 O35 SING N N 39 I0M O35 C36 SING N N 40 I0M C36 C37 SING N N 41 I0M C37 O38 DOUB N N 42 I0M C37 O39 SING N N 43 I0M C5 H41 SING N N 44 I0M C8 H42 SING N N 45 I0M C10 H43 SING N N 46 I0M C15 H45 SING N N 47 I0M C15 H46 SING N N 48 I0M C26 H53 SING N N 49 I0M C26 H52 SING N N 50 I0M C28 H55 SING N N 51 I0M C28 H56 SING N N 52 I0M C12 H44 SING N N 53 I0M C19 H48 SING N N 54 I0M C23 H49 SING N N 55 I0M C25 H51 SING N N 56 I0M C25 H50 SING N N 57 I0M C29 H58 SING N N 58 I0M C29 H57 SING N N 59 I0M C3 H40 SING N N 60 I0M C30 H61 SING N N 61 I0M C30 H59 SING N N 62 I0M C30 H60 SING N N 63 I0M C31 H62 SING N N 64 I0M C31 H63 SING N N 65 I0M C32 H64 SING N N 66 I0M C33 H66 SING N N 67 I0M C33 H65 SING N N 68 I0M C34 H68 SING N N 69 I0M C34 H67 SING N N 70 I0M C36 H69 SING N N 71 I0M C36 H70 SING N N 72 I0M N16 H47 SING N N 73 I0M N27 H54 SING N N 74 I0M O39 H1 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I0M InChI InChI 1.06 "InChI=1S/C27H30Cl2N6O4/c1-33-4-6-35(7-5-33)27-30-13-23(14-31-27)39-25-9-18(15-34-3-2-22(16-34)38-17-26(36)37)8-24(32-25)19-10-20(28)12-21(29)11-19/h8-14,22H,2-7,15-17H2,1H3,(H,36,37)/p+2/t22-/m0/s1" I0M InChIKey InChI 1.06 NPVPASPENGAFSC-QFIPXVFZSA-P I0M SMILES_CANONICAL CACTVS 3.385 "C[NH+]1CCN(CC1)c2ncc(Oc3cc(C[NH+]4CC[C@@H](C4)OCC(O)=O)cc(n3)c5cc(Cl)cc(Cl)c5)cn2" I0M SMILES CACTVS 3.385 "C[NH+]1CCN(CC1)c2ncc(Oc3cc(C[NH+]4CC[CH](C4)OCC(O)=O)cc(n3)c5cc(Cl)cc(Cl)c5)cn2" I0M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[NH+]1CCN(CC1)c2ncc(cn2)Oc3cc(cc(n3)c4cc(cc(c4)Cl)Cl)C[NH+]5CC[C@@H](C5)OCC(=O)O" I0M SMILES "OpenEye OEToolkits" 2.0.7 "C[NH+]1CCN(CC1)c2ncc(cn2)Oc3cc(cc(n3)c4cc(cc(c4)Cl)Cl)C[NH+]5CCC(C5)OCC(=O)O" # _pdbx_chem_comp_identifier.comp_id I0M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(3~{S})-1-[[2-[3,5-bis(chloranyl)phenyl]-6-[2-(4-methylpiperazin-4-ium-1-yl)pyrimidin-5-yl]oxy-pyridin-4-yl]methyl]pyrrolidin-1-ium-3-yl]oxyethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I0M "Create component" 2022-02-08 PDBE I0M "Initial release" 2022-04-13 RCSB I0M "Modify descriptor" 2022-08-22 RCSB #