data_I1T # _chem_comp.id I1T _chem_comp.name "(1S,3R,4S)-3-formyl-4-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]cyclopentane-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-06 _chem_comp.pdbx_modified_date 2022-04-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.310 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I1T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7TED _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I1T C01 C1 C 0 1 N N N -15.196 -36.043 60.280 2.574 -0.284 -1.120 C01 I1T 1 I1T C06 C2 C 0 1 N N S -14.674 -35.062 61.294 2.231 -1.695 -0.598 C06 I1T 2 I1T C11 C3 C 0 1 Y N N -16.247 -34.939 65.419 -2.209 -2.737 -0.594 C11 I1T 3 I1T C15 C4 C 0 1 Y N N -17.898 -36.707 64.792 -2.117 -0.381 -0.238 C15 I1T 4 I1T C16 C5 C 0 1 Y N N -16.659 -35.842 64.494 -1.497 -1.544 -0.665 C16 I1T 5 I1T C17 C6 C 0 1 N N N -18.391 -37.741 63.705 -1.388 0.937 -0.296 C17 I1T 6 I1T C19 C7 C 0 1 N N N -16.511 -33.792 67.773 -4.289 -4.005 -0.018 C19 I1T 7 I1T C20 C8 C 0 1 N N N -13.815 -32.527 61.271 2.480 -2.226 1.827 C20 I1T 8 I1T C03 C9 C 0 1 N N N -15.642 -35.955 57.581 4.391 1.384 -0.626 C03 I1T 9 I1T C08 C10 C 0 1 N N R -14.270 -33.817 60.536 3.225 -1.997 0.537 C08 I1T 10 I1T C12 C11 C 0 1 Y N N -17.009 -34.805 66.748 -3.505 -2.720 -0.101 C12 I1T 11 I1T C14 C12 C 0 1 Y N N -18.542 -36.548 65.976 -3.413 -0.444 0.241 C14 I1T 12 I1T O21 O1 O 0 1 N N N -13.592 -32.578 62.451 2.582 -3.282 2.403 O21 I1T 13 I1T C02 C13 C 0 1 N N S -15.161 -35.349 58.932 4.058 -0.083 -0.725 C02 I1T 14 I1T C09 C14 C 0 1 N N N -15.982 -36.050 63.146 -0.086 -1.517 -1.193 C09 I1T 15 I1T C10 C15 C 0 1 N N N -15.106 -33.873 59.259 4.136 -0.759 0.666 C10 I1T 16 I1T N07 N1 N 1 1 N N N -14.949 -35.027 62.804 0.856 -1.721 -0.084 N07 I1T 17 I1T N13 N2 N 1 1 Y N N -18.090 -35.585 66.995 -4.059 -1.591 0.295 N13 I1T 18 I1T O04 O2 O 0 1 N N N -14.819 -36.402 56.756 5.490 1.734 -0.233 O04 I1T 19 I1T O05 O3 O -1 1 N N N -16.865 -35.997 57.295 3.560 2.220 -0.939 O05 I1T 20 I1T O18 O4 O -1 1 N N N -15.099 -34.118 65.184 -1.644 -3.903 -1.006 O18 I1T 21 I1T O22 O5 O 0 1 N N N -17.606 -38.885 63.838 -2.240 1.974 0.197 O22 I1T 22 I1T O24 O6 O 0 1 N N N -16.889 -39.285 61.261 -1.330 3.968 -1.053 O24 I1T 23 I1T O25 O7 O 0 1 N N N -16.190 -40.825 63.193 -3.031 4.418 0.756 O25 I1T 24 I1T O26 O8 O 0 1 N N N -18.549 -40.773 62.307 -0.580 3.664 1.337 O26 I1T 25 I1T P23 P1 P 0 1 N N N -17.314 -39.974 62.599 -1.785 3.516 0.280 P23 I1T 26 I1T H1 H1 H 0 1 N N N -16.228 -36.331 60.530 2.458 -0.239 -2.203 H1 I1T 27 I1T H2 H2 H 0 1 N N N -14.559 -36.940 60.260 1.944 0.464 -0.638 H2 I1T 28 I1T H3 H3 H 0 1 N N N -13.664 -35.491 61.368 2.345 -2.426 -1.398 H3 I1T 29 I1T H4 H4 H 0 1 N N N -18.270 -37.316 62.698 -0.490 0.882 0.319 H4 I1T 30 I1T H5 H5 H 0 1 N N N -19.449 -37.989 63.873 -1.111 1.154 -1.327 H5 I1T 31 I1T H6 H6 H 0 1 N N N -17.003 -32.823 67.601 -4.119 -4.472 0.952 H6 I1T 32 I1T H7 H7 H 0 1 N N N -16.748 -34.149 68.786 -5.351 -3.791 -0.137 H7 I1T 33 I1T H8 H8 H 0 1 N N N -15.422 -33.673 67.672 -3.963 -4.681 -0.809 H8 I1T 34 I1T H9 H9 H 0 1 N N N -13.701 -31.599 60.731 1.856 -1.446 2.236 H9 I1T 35 I1T H10 H10 H 0 1 N N N -13.301 -34.149 60.136 3.820 -2.875 0.289 H10 I1T 36 I1T H11 H11 H 0 1 N N N -19.417 -37.149 66.178 -3.901 0.460 0.575 H11 I1T 37 I1T H12 H12 H 0 1 N N N -14.084 -35.479 58.750 4.720 -0.580 -1.434 H12 I1T 38 I1T H13 H13 H 0 1 N N N -16.757 -36.029 62.366 0.042 -2.311 -1.928 H13 I1T 39 I1T H14 H14 H 0 1 N N N -15.497 -37.037 63.154 0.108 -0.553 -1.662 H14 I1T 40 I1T H15 H15 H 0 1 N N N -14.622 -33.309 58.448 3.761 -0.087 1.438 H15 I1T 41 I1T H16 H16 H 0 1 N N N -16.115 -33.472 59.433 5.160 -1.060 0.887 H16 I1T 42 I1T H17 H17 H 0 1 N N N -14.105 -35.227 63.301 0.676 -2.614 0.350 H17 I1T 43 I1T H21 H21 H 0 1 N N N -15.426 -40.778 62.630 -2.829 5.361 0.829 H21 I1T 44 I1T H22 H22 H 0 1 N N N -18.781 -40.675 61.391 -0.808 3.385 2.235 H22 I1T 45 I1T H23 H23 H 0 1 N N N -18.578 -35.507 67.864 -4.968 -1.605 0.636 H23 I1T 46 I1T H18 H18 H 0 1 N N N -15.281 -34.119 63.061 0.738 -0.986 0.597 H18 I1T 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I1T O04 C03 DOUB N N 1 I1T O05 C03 SING N N 2 I1T C03 C02 SING N N 3 I1T C02 C10 SING N N 4 I1T C02 C01 SING N N 5 I1T C10 C08 SING N N 6 I1T C01 C06 SING N N 7 I1T C08 C20 SING N N 8 I1T C08 C06 SING N N 9 I1T O24 P23 DOUB N N 10 I1T C20 O21 DOUB N N 11 I1T C06 N07 SING N N 12 I1T O26 P23 SING N N 13 I1T P23 O25 SING N N 14 I1T P23 O22 SING N N 15 I1T N07 C09 SING N N 16 I1T C09 C16 SING N N 17 I1T C17 O22 SING N N 18 I1T C17 C15 SING N N 19 I1T C16 C15 DOUB Y N 20 I1T C16 C11 SING Y N 21 I1T C15 C14 SING Y N 22 I1T O18 C11 SING N N 23 I1T C11 C12 DOUB Y N 24 I1T C14 N13 DOUB Y N 25 I1T C12 N13 SING Y N 26 I1T C12 C19 SING N N 27 I1T C01 H1 SING N N 28 I1T C01 H2 SING N N 29 I1T C06 H3 SING N N 30 I1T C17 H4 SING N N 31 I1T C17 H5 SING N N 32 I1T C19 H6 SING N N 33 I1T C19 H7 SING N N 34 I1T C19 H8 SING N N 35 I1T C20 H9 SING N N 36 I1T C08 H10 SING N N 37 I1T C14 H11 SING N N 38 I1T C02 H12 SING N N 39 I1T C09 H13 SING N N 40 I1T C09 H14 SING N N 41 I1T C10 H15 SING N N 42 I1T C10 H16 SING N N 43 I1T N07 H17 SING N N 44 I1T O25 H21 SING N N 45 I1T O26 H22 SING N N 46 I1T N13 H23 SING N N 47 I1T N07 H18 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I1T SMILES ACDLabs 12.01 "O=P(O)(O)OCc1c[nH+]c(C)c([O-])c1C[NH2+]C1CC(CC1C=O)C([O-])=O" I1T InChI InChI 1.03 "InChI=1S/C15H21N2O8P/c1-8-14(19)12(11(4-16-8)7-25-26(22,23)24)5-17-13-3-9(15(20)21)2-10(13)6-18/h4,6,9-10,13,17,19H,2-3,5,7H2,1H3,(H,20,21)(H2,22,23,24)/t9-,10-,13-/m0/s1" I1T InChIKey InChI 1.03 QPJGRJWUQOEMOU-KWBADKCTSA-N I1T SMILES_CANONICAL CACTVS 3.385 "Cc1[nH+]cc(CO[P](O)(O)=O)c(C[NH2+][C@H]2C[C@H](C[C@H]2C=O)C([O-])=O)c1[O-]" I1T SMILES CACTVS 3.385 "Cc1[nH+]cc(CO[P](O)(O)=O)c(C[NH2+][CH]2C[CH](C[CH]2C=O)C([O-])=O)c1[O-]" I1T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)C[NH2+][C@H]2C[C@H](C[C@H]2C=O)C(=O)[O-])[O-]" I1T SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)C[NH2+]C2CC(CC2C=O)C(=O)[O-])[O-]" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier I1T "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,3R,4S)-3-formyl-4-[({2-methyl-3-oxido-5-[(phosphonooxy)methyl]pyridin-1-ium-4-yl}methyl)azaniumyl]cyclopentane-1-carboxylate" I1T "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},3~{R},4~{S})-3-methanoyl-4-[[2-methyl-3-oxidanidyl-5-(phosphonooxymethyl)pyridin-1-ium-4-yl]methylazaniumyl]cyclopentane-1-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I1T "Create component" 2022-01-06 RCSB I1T "Initial release" 2022-04-06 RCSB ##