data_IB # _chem_comp.id IB _chem_comp.name "2'-(3-IODO-4-METHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C26 H26 I N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 565.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 442D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IB CYT CYT C 0 1 Y N N 14.559 -0.264 12.804 7.043 1.010 -0.408 CYT IB 1 IB C1 C1 C 0 1 Y N N 15.845 1.429 14.929 4.292 1.241 -0.161 C1 IB 2 IB C2 C2 C 0 1 Y N N 13.836 0.545 13.764 6.424 2.229 -0.659 C2 IB 3 IB C3 C3 C 0 1 Y N N 14.465 1.371 14.795 5.057 2.348 -0.537 C3 IB 4 IB C4 C4 C 0 1 Y N N 16.044 -0.097 13.066 6.285 -0.094 -0.038 C4 IB 5 IB C5 C5 C 0 1 Y N N 16.653 0.707 14.076 4.917 0.018 0.091 C5 IB 6 IB O O O 0 1 N N N 13.711 -1.015 11.842 8.391 0.897 -0.530 O IB 7 IB C6 C6 C 0 1 Y N N 16.375 2.202 15.978 2.826 1.365 -0.028 C6 IB 8 IB C7 C7 C 0 1 Y N N 16.491 3.232 17.886 0.661 0.918 -0.126 C7 IB 9 IB C8 C8 C 0 1 Y N N 17.752 3.360 17.176 0.867 2.185 0.453 C8 IB 10 IB C9 C9 C 0 1 Y N N 18.881 4.137 17.716 -0.234 2.946 0.864 C9 IB 11 IB C10 C10 C 0 1 Y N N 18.622 4.764 19.022 -1.497 2.462 0.704 C10 IB 12 IB C11 C11 C 0 1 Y N N 17.340 4.608 19.698 -1.709 1.202 0.129 C11 IB 13 IB C12 C12 C 0 1 Y N N 16.294 3.861 19.150 -0.624 0.431 -0.286 C12 IB 14 IB N1 N1 N 0 1 Y N N 15.667 2.508 17.089 1.917 0.420 -0.421 N1 IB 15 IB N2 N2 N 0 1 Y N N 17.610 2.735 16.021 2.199 2.395 0.489 N2 IB 16 IB C13 C13 C 0 1 Y N N 17.110 5.117 20.980 -3.085 0.690 -0.039 C13 IB 17 IB C14 C14 C 0 1 Y N N 16.381 5.661 22.986 -5.216 0.222 0.344 C14 IB 18 IB C15 C15 C 0 1 Y N N 17.553 6.425 22.706 -4.827 -0.291 -0.907 C15 IB 19 IB C16 C16 C 0 1 Y N N 18.148 7.387 23.690 -5.760 -0.979 -1.690 C16 IB 20 IB C17 C17 C 0 1 Y N N 17.452 7.504 24.971 -7.037 -1.147 -1.240 C17 IB 21 IB C18 C18 C 0 1 Y N N 16.228 6.695 25.244 -7.426 -0.639 -0.002 C18 IB 22 IB C19 C19 C 0 1 Y N N 15.699 5.786 24.269 -6.517 0.044 0.790 C19 IB 23 IB N3 N3 N 0 1 Y N N 16.213 4.889 21.866 -4.097 0.838 0.873 N3 IB 24 IB N4 N4 N 0 1 Y N N 17.940 6.111 21.472 -3.522 0.031 -1.084 N4 IB 25 IB N6 N6 N 0 1 N N N 15.491 6.719 26.522 -8.738 -0.821 0.444 N6 IB 26 IB N7 N7 N 1 1 N N N 14.410 6.074 29.069 -11.537 -0.406 -0.111 N7 IB 27 IB C20 C20 C 0 1 N N N 14.317 5.747 26.779 -9.440 -1.570 -0.604 C20 IB 28 IB C21 C21 C 0 1 N N N 13.528 6.496 27.873 -10.913 -1.732 -0.224 C21 IB 29 IB C22 C22 C 0 1 N N N 15.712 6.850 28.793 -10.823 0.383 0.901 C22 IB 30 IB C23 C23 C 0 1 N N N 16.415 6.149 27.618 -9.352 0.512 0.503 C23 IB 31 IB C24 C24 C 0 1 N N N 13.797 6.450 30.444 -12.943 -0.558 0.287 C24 IB 32 IB I I I 0 1 N N N 17.230 -1.187 11.785 7.224 -1.929 0.339 I IB 33 IB CN2 CN2 C 0 1 N N N 12.339 -0.831 11.181 8.879 2.181 -0.923 CN2 IB 34 IB H2 H2 H 0 1 N N N 12.734 0.531 13.706 7.016 3.084 -0.951 H2 IB 35 IB H3 H3 H 0 1 N N N 13.873 1.976 15.502 4.577 3.295 -0.733 H3 IB 36 IB H5 H5 H 0 1 N N N 17.747 0.770 14.197 4.329 -0.839 0.383 H5 IB 37 IB H9 H9 H 0 1 N N N 19.842 4.240 17.185 -0.082 3.919 1.308 H9 IB 38 IB H10 H10 H 0 1 N N N 19.408 5.366 19.506 -2.343 3.054 1.022 H10 IB 39 IB H12 H12 H 0 1 N N N 15.341 3.770 19.698 -0.786 -0.540 -0.729 H12 IB 40 IB HN1 HN1 H 0 1 N N N 14.701 2.244 17.286 2.116 -0.437 -0.830 HN1 IB 41 IB H16 H16 H 0 1 N N N 19.054 7.980 23.481 -5.469 -1.377 -2.652 H16 IB 42 IB H17 H17 H 0 1 N N N 17.849 8.200 25.728 -7.754 -1.679 -1.849 H17 IB 43 IB H19 H19 H 0 1 N N N 14.793 5.199 24.499 -6.820 0.436 1.749 H19 IB 44 IB HN3 HN3 H 0 1 N N N 15.478 4.199 21.704 -4.040 1.290 1.729 HN3 IB 45 IB HN7 HN7 H 0 1 N N N 14.529 5.063 29.135 -11.488 0.066 -1.002 HN7 IB 46 IB H201 1H20 H 0 0 N N N 13.726 5.465 25.875 -9.366 -1.030 -1.548 H201 IB 47 IB H202 2H20 H 0 0 N N N 14.612 4.703 27.036 -8.984 -2.554 -0.714 H202 IB 48 IB H211 1H21 H 0 0 N N N 12.436 6.279 27.947 -11.425 -2.311 -0.992 H211 IB 49 IB H212 2H21 H 0 0 N N N 13.367 7.589 27.723 -10.986 -2.250 0.732 H212 IB 50 IB H221 1H22 H 0 0 N N N 15.543 7.938 28.616 -11.269 1.376 0.969 H221 IB 51 IB H222 2H22 H 0 0 N N N 16.360 6.950 29.694 -10.896 -0.115 1.868 H222 IB 52 IB H231 1H23 H 0 0 N N N 16.529 5.041 27.671 -8.828 1.120 1.240 H231 IB 53 IB H232 2H23 H 0 0 N N N 17.512 6.310 27.502 -9.281 0.987 -0.475 H232 IB 54 IB H241 1H24 H 0 0 N N N 14.433 6.145 31.307 -12.995 -1.067 1.249 H241 IB 55 IB H242 2H24 H 0 0 N N N 13.562 7.539 30.489 -13.405 0.425 0.370 H242 IB 56 IB H243 3H24 H 0 0 N N N 12.766 6.035 30.545 -13.471 -1.146 -0.464 H243 IB 57 IB HN21 1HN2 H 0 0 N N N 11.702 -1.394 10.459 9.963 2.139 -1.034 HN21 IB 58 IB HN22 2HN2 H 0 0 N N N 11.659 -0.689 12.053 8.428 2.466 -1.873 HN22 IB 59 IB HN23 3HN2 H 0 0 N N N 12.425 0.173 10.704 8.620 2.917 -0.162 HN23 IB 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IB CYT C2 DOUB Y N 1 IB CYT C4 SING Y N 2 IB CYT O SING N N 3 IB C1 C3 DOUB Y N 4 IB C1 C5 SING Y N 5 IB C1 C6 SING Y N 6 IB C2 C3 SING Y N 7 IB C2 H2 SING N N 8 IB C3 H3 SING N N 9 IB C4 C5 DOUB Y N 10 IB C4 I SING N N 11 IB C5 H5 SING N N 12 IB O CN2 SING N N 13 IB C6 N1 SING Y N 14 IB C6 N2 DOUB Y N 15 IB C7 C8 DOUB Y N 16 IB C7 C12 SING Y N 17 IB C7 N1 SING Y N 18 IB C8 C9 SING Y N 19 IB C8 N2 SING Y N 20 IB C9 C10 DOUB Y N 21 IB C9 H9 SING N N 22 IB C10 C11 SING Y N 23 IB C10 H10 SING N N 24 IB C11 C12 DOUB Y N 25 IB C11 C13 SING Y N 26 IB C12 H12 SING N N 27 IB N1 HN1 SING N N 28 IB C13 N3 SING Y N 29 IB C13 N4 DOUB Y N 30 IB C14 C15 DOUB Y N 31 IB C14 C19 SING Y N 32 IB C14 N3 SING Y N 33 IB C15 C16 SING Y N 34 IB C15 N4 SING Y N 35 IB C16 C17 DOUB Y N 36 IB C16 H16 SING N N 37 IB C17 C18 SING Y N 38 IB C17 H17 SING N N 39 IB C18 C19 DOUB Y N 40 IB C18 N6 SING N N 41 IB C19 H19 SING N N 42 IB N3 HN3 SING N N 43 IB N6 C20 SING N N 44 IB N6 C23 SING N N 45 IB N7 C21 SING N N 46 IB N7 C22 SING N N 47 IB N7 C24 SING N N 48 IB N7 HN7 SING N N 49 IB C20 C21 SING N N 50 IB C20 H201 SING N N 51 IB C20 H202 SING N N 52 IB C21 H211 SING N N 53 IB C21 H212 SING N N 54 IB C22 C23 SING N N 55 IB C22 H221 SING N N 56 IB C22 H222 SING N N 57 IB C23 H231 SING N N 58 IB C23 H232 SING N N 59 IB C24 H241 SING N N 60 IB C24 H242 SING N N 61 IB C24 H243 SING N N 62 IB CN2 HN21 SING N N 63 IB CN2 HN22 SING N N 64 IB CN2 HN23 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IB SMILES ACDLabs 10.04 "Ic1c(OC)ccc(c1)c3nc2ccc(cc2n3)c6nc4c(cc(cc4)N5CC[NH+](CC5)C)n6" IB SMILES_CANONICAL CACTVS 3.341 "COc1ccc(cc1I)c2[nH]c3cc(ccc3n2)c4[nH]c5cc(ccc5n4)N6CC[NH+](C)CC6" IB SMILES CACTVS 3.341 "COc1ccc(cc1I)c2[nH]c3cc(ccc3n2)c4[nH]c5cc(ccc5n4)N6CC[NH+](C)CC6" IB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[NH+]1CCN(CC1)c2ccc3c(c2)[nH]c(n3)c4ccc5c(c4)[nH]c(n5)c6ccc(c(c6)I)OC" IB SMILES "OpenEye OEToolkits" 1.5.0 "C[NH+]1CCN(CC1)c2ccc3c(c2)[nH]c(n3)c4ccc5c(c4)[nH]c(n5)c6ccc(c(c6)I)OC" IB InChI InChI 1.03 "InChI=1S/C26H25IN6O/c1-32-9-11-33(12-10-32)18-5-7-21-23(15-18)31-26(29-21)17-3-6-20-22(14-17)30-25(28-20)16-4-8-24(34-2)19(27)13-16/h3-8,13-15H,9-12H2,1-2H3,(H,28,30)(H,29,31)/p+1" IB InChIKey InChI 1.03 SPTCBHDLCJPQQB-UHFFFAOYSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IB "SYSTEMATIC NAME" ACDLabs 10.04 "4-[2'-(3-iodo-4-methoxyphenyl)-1H,3'H-2,5'-bibenzimidazol-6-yl]-1-methylpiperazin-1-ium" IB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-(3-iodo-4-methoxy-phenyl)-6-[6-(4-methylpiperazin-4-ium-1-yl)-1H-benzimidazol-2-yl]-1H-benzimidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IB "Create component" 1999-07-08 RCSB IB "Modify aromatic_flag" 2011-06-04 RCSB IB "Modify descriptor" 2011-06-04 RCSB #