data_IC # _chem_comp.id IC _chem_comp.name "ISOCYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H14 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-11-07 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.197 _chem_comp.one_letter_code C _chem_comp.three_letter_code IC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1G3A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IC P P P 0 1 N N N -2.990 5.695 7.145 0.932 -0.079 -4.192 P IC 1 IC OP1 O1P O 0 1 N N N -3.026 6.425 8.431 1.620 1.199 -3.904 OP1 IC 2 IC OP2 O2P O 0 1 N N N -4.041 5.929 6.134 1.974 -1.112 -4.855 OP2 IC 3 IC OP3 O3P O 0 1 N Y N -2.960 4.113 7.478 -0.284 0.183 -5.212 OP3 IC 4 IC "O5'" O5* O 0 1 N N N -1.562 5.973 6.445 0.359 -0.700 -2.821 "O5'" IC 5 IC "O3'" O3* O 0 1 N N N 1.497 8.548 6.059 -3.437 0.488 -0.640 "O3'" IC 6 IC "C1'" C1* C 0 1 N N R 1.442 5.463 4.140 -0.755 -0.488 1.279 "C1'" IC 7 IC "C2'" C2* C 0 1 N N R 1.866 6.918 4.301 -1.815 0.630 1.185 "C2'" IC 8 IC "C3'" C3* C 0 1 N N S 0.935 7.425 5.398 -2.071 0.776 -0.332 "C3'" IC 9 IC "C4'" C4* C 0 1 N N R 0.851 6.175 6.274 -1.138 -0.274 -0.974 "C4'" IC 10 IC "C5'" C5* C 0 1 N N N -0.374 6.131 7.196 -0.554 0.256 -2.284 "C5'" IC 11 IC "O4'" O4* O 0 1 N N N 0.873 5.065 5.382 -0.089 -0.478 -0.002 "O4'" IC 12 IC "O2'" O2* O 0 1 N N N 3.222 6.937 4.707 -3.015 0.250 1.861 "O2'" IC 13 IC N2 N2 N 0 1 N N N 2.330 5.471 1.417 -1.169 -1.386 3.857 N2 IC 14 IC C4 C4 C 0 1 N N N -1.103 4.931 0.707 1.916 0.303 4.380 C4 IC 15 IC N3 N3 N 0 1 N N N 0.250 5.078 0.615 0.802 -0.409 4.594 N3 IC 16 IC C2 C2 C 0 1 N N N 1.033 5.281 1.678 -0.038 -0.654 3.609 C2 IC 17 IC O4 O4 O 0 1 N N N -1.775 4.717 -0.294 2.690 0.525 5.299 O4 IC 18 IC N1 N1 N 0 1 N N N 0.520 5.321 2.976 0.199 -0.198 2.352 N1 IC 19 IC C6 C6 C 0 1 N N N -0.842 5.245 3.129 1.317 0.537 2.084 C6 IC 20 IC C5 C5 C 0 1 N N N -1.636 5.048 2.050 2.191 0.799 3.080 C5 IC 21 IC HOP2 2HOP H 0 0 N N N -4.017 5.460 5.308 2.293 -0.702 -5.671 HOP2 IC 22 IC HOP3 3HOP H 0 0 N N N -2.936 3.644 6.652 -0.704 -0.673 -5.373 HOP3 IC 23 IC "HO3'" H3T H 0 0 N Y N 0.917 8.863 6.742 -3.970 1.173 -0.216 "HO3'" IC 24 IC "H1'" H1* H 0 1 N N N 2.327 4.850 3.962 -1.234 -1.452 1.450 "H1'" IC 25 IC "H2'" H2* H 0 1 N N N 1.738 7.490 3.384 -1.424 1.561 1.597 "H2'" IC 26 IC "H3'" H3* H 0 1 N N N -0.050 7.650 4.984 -1.808 1.778 -0.671 "H3'" IC 27 IC "H4'" H4* H 0 1 N N N 1.750 6.137 6.890 -1.678 -1.204 -1.149 "H4'" IC 28 IC "H5'" 1H5* H 0 1 N N N -0.265 5.293 7.884 -1.360 0.429 -2.997 "H5'" IC 29 IC "H5''" 2H5* H 0 0 N N N -0.426 7.054 7.775 -0.030 1.193 -2.095 "H5''" IC 30 IC "HO2'" 2HO* H 0 0 N N N 3.340 7.729 5.241 -3.655 0.960 1.715 "HO2'" IC 31 IC H21 1H2 H 0 1 N N N 2.982 5.691 2.152 -1.264 -1.863 4.696 H21 IC 32 IC H22 2H2 H 0 1 N N N 2.643 5.453 0.451 -1.877 -1.424 3.194 H22 IC 33 IC H6 H6 H 0 1 N N N -1.292 5.336 4.105 1.503 0.903 1.085 H6 IC 34 IC H5 H5 H 0 1 N N N -2.705 4.975 2.181 3.084 1.375 2.889 H5 IC 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IC P OP1 DOUB N N 1 IC P OP2 SING N N 2 IC P OP3 SING N N 3 IC P "O5'" SING N N 4 IC OP2 HOP2 SING N N 5 IC OP3 HOP3 SING N N 6 IC "O5'" "C5'" SING N N 7 IC "O3'" "C3'" SING N N 8 IC "O3'" "HO3'" SING N N 9 IC "C1'" "C2'" SING N N 10 IC "C1'" "O4'" SING N N 11 IC "C1'" N1 SING N N 12 IC "C1'" "H1'" SING N N 13 IC "C2'" "C3'" SING N N 14 IC "C2'" "O2'" SING N N 15 IC "C2'" "H2'" SING N N 16 IC "C3'" "C4'" SING N N 17 IC "C3'" "H3'" SING N N 18 IC "C4'" "C5'" SING N N 19 IC "C4'" "O4'" SING N N 20 IC "C4'" "H4'" SING N N 21 IC "C5'" "H5'" SING N N 22 IC "C5'" "H5''" SING N N 23 IC "O2'" "HO2'" SING N N 24 IC N2 C2 SING N N 25 IC N2 H21 SING N N 26 IC N2 H22 SING N N 27 IC C4 N3 SING N N 28 IC C4 O4 DOUB N N 29 IC C4 C5 SING N N 30 IC N3 C2 DOUB N N 31 IC C2 N1 SING N N 32 IC N1 C6 SING N N 33 IC C6 C5 DOUB N N 34 IC C6 H6 SING N N 35 IC C5 H5 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IC SMILES ACDLabs 10.04 "O=C1N=C(N(C=C1)C2OC(C(O)C2O)COP(=O)(O)O)N" IC SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)C=CN1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" IC SMILES CACTVS 3.341 "NC1=NC(=O)C=CN1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" IC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=NC1=O)N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" IC SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=NC1=O)N)C2C(C(C(O2)COP(=O)(O)O)O)O" IC InChI InChI 1.03 "InChI=1S/C9H14N3O8P/c10-9-11-5(13)1-2-12(9)8-7(15)6(14)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,14-15H,3H2,(H2,10,11,13)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" IC InChIKey InChI 1.03 ONSQLDCEJIIUJS-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IC "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-1-(5-O-phosphono-beta-D-ribofuranosyl)pyrimidin-4(1H)-one" IC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-4-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IC "Create component" 2000-11-07 RCSB IC "Modify descriptor" 2011-06-04 RCSB #