data_IDJ # _chem_comp.id IDJ _chem_comp.name "(2R,3R,4R,5S)-3,4,5-trihydroxypiperidine-2-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[2R,3R,4R,5S]-2-carboxy-3,4,5-trihydroxy-piperidine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-05-07 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 177.155 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IDJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4KGL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IDJ O6B O6B O 0 1 N N N 328.025 -40.793 -24.093 -3.020 -0.992 -0.002 O6B IDJ 1 IDJ C6 C6 C 0 1 N N N 328.876 -41.670 -24.341 -2.149 0.013 0.182 C6 IDJ 2 IDJ O6A O6A O 0 1 N N N 328.671 -42.891 -24.166 -2.523 1.159 0.101 O6A IDJ 3 IDJ C5 C5 C 0 1 N N R 330.204 -41.217 -24.877 -0.705 -0.288 0.490 C5 IDJ 4 IDJ N5 N5 N 0 1 N N N 330.752 -42.149 -25.844 -0.080 0.889 1.106 N5 IDJ 5 IDJ C4 C4 C 0 1 N N R 331.204 -40.928 -23.741 0.031 -0.638 -0.806 C4 IDJ 6 IDJ O4 O4 O 0 1 N N N 330.955 -41.742 -22.577 -0.058 0.460 -1.716 O4 IDJ 7 IDJ C3 C3 C 0 1 N N R 332.684 -41.089 -24.130 1.501 -0.924 -0.491 C3 IDJ 8 IDJ O3 O3 O 0 1 N N N 333.437 -40.003 -23.578 1.593 -2.054 0.378 O3 IDJ 9 IDJ C2 C2 C 0 1 N N S 333.053 -41.247 -25.619 2.116 0.300 0.194 C2 IDJ 10 IDJ O2 O2 O 0 1 N N N 334.181 -42.132 -25.690 2.071 1.418 -0.696 O2 IDJ 11 IDJ C1 C1 C 0 1 N N N 331.960 -41.782 -26.556 1.320 0.623 1.461 C1 IDJ 12 IDJ H1 H1 H 0 1 N N N 327.234 -41.203 -23.764 -3.935 -0.749 -0.197 H1 IDJ 13 IDJ H2 H2 H 0 1 N N N 330.033 -40.262 -25.395 -0.649 -1.132 1.178 H2 IDJ 14 IDJ H3 H3 H 0 1 N N N 330.043 -42.312 -26.531 -0.604 1.197 1.911 H3 IDJ 15 IDJ H5 H5 H 0 1 N N N 331.063 -39.875 -23.455 -0.424 -1.521 -1.256 H5 IDJ 16 IDJ H6 H6 H 0 1 N N N 331.591 -41.534 -21.903 -0.964 0.699 -1.958 H6 IDJ 17 IDJ H7 H7 H 0 1 N N N 333.029 -42.009 -23.634 2.038 -1.132 -1.417 H7 IDJ 18 IDJ H8 H8 H 0 1 N N N 333.216 -39.898 -22.660 2.499 -2.292 0.619 H8 IDJ 19 IDJ H9 H9 H 0 1 N N N 333.354 -40.257 -25.992 3.151 0.087 0.459 H9 IDJ 20 IDJ H10 H10 H 0 1 N N N 334.869 -41.816 -25.116 2.444 2.230 -0.327 H10 IDJ 21 IDJ H11 H11 H 0 1 N N N 332.346 -42.670 -27.078 1.746 1.502 1.943 H11 IDJ 22 IDJ H12 H12 H 0 1 N N N 331.713 -41.003 -27.292 1.367 -0.225 2.144 H12 IDJ 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IDJ C1 N5 SING N N 1 IDJ C1 C2 SING N N 2 IDJ N5 C5 SING N N 3 IDJ O2 C2 SING N N 4 IDJ C2 C3 SING N N 5 IDJ C5 C6 SING N N 6 IDJ C5 C4 SING N N 7 IDJ C6 O6A DOUB N N 8 IDJ C6 O6B SING N N 9 IDJ C3 C4 SING N N 10 IDJ C3 O3 SING N N 11 IDJ C4 O4 SING N N 12 IDJ O6B H1 SING N N 13 IDJ C5 H2 SING N N 14 IDJ N5 H3 SING N N 15 IDJ C4 H5 SING N N 16 IDJ O4 H6 SING N N 17 IDJ C3 H7 SING N N 18 IDJ O3 H8 SING N N 19 IDJ C2 H9 SING N N 20 IDJ O2 H10 SING N N 21 IDJ C1 H11 SING N N 22 IDJ C1 H12 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IDJ SMILES ACDLabs 12.01 "O=C(O)C1NCC(O)C(O)C1O" IDJ InChI InChI 1.03 "InChI=1S/C6H11NO5/c8-2-1-7-3(6(11)12)5(10)4(2)9/h2-5,7-10H,1H2,(H,11,12)/t2-,3+,4+,5+/m0/s1" IDJ InChIKey InChI 1.03 ZHFMVVUVCALAMY-NRXMZTRTSA-N IDJ SMILES_CANONICAL CACTVS 3.370 "O[C@H]1CN[C@H]([C@@H](O)[C@@H]1O)C(O)=O" IDJ SMILES CACTVS 3.370 "O[CH]1CN[CH]([CH](O)[CH]1O)C(O)=O" IDJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@H]([C@@H]([C@@H](N1)C(=O)O)O)O)O" IDJ SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(C(N1)C(=O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IDJ "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-3,4,5-trihydroxypiperidine-2-carboxylic acid" IDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4R,5S)-3,4,5-tris(oxidanyl)piperidine-2-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IDJ "Create component" 2013-05-07 RCSB IDJ "Initial release" 2013-09-18 RCSB IDJ "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IDJ _pdbx_chem_comp_synonyms.name "[2R,3R,4R,5S]-2-carboxy-3,4,5-trihydroxy-piperidine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##