data_IE5 # _chem_comp.id IE5 _chem_comp.name "Biliverdine IX Alpha" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H34 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-[5-[(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-27 _chem_comp.pdbx_modified_date 2023-09-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 582.646 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IE5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Y48 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IE5 N3 N1 N 0 1 N N N 170.706 156.289 184.801 -0.556 1.425 0.108 N3 IE5 1 IE5 C4 C1 C 0 1 N N N 169.596 155.434 184.758 -1.809 1.144 0.486 C4 IE5 2 IE5 C5 C2 C 0 1 N N N 168.841 155.250 185.862 -2.342 -0.141 0.676 C5 IE5 3 IE5 C6 C3 C 0 1 Y N N 169.186 155.860 187.240 -1.519 -1.264 0.550 C6 IE5 4 IE5 C8 C4 C 0 1 N N N 171.492 159.317 188.745 2.632 -2.133 0.782 C8 IE5 5 IE5 C10 C5 C 0 1 N N N 172.621 157.126 183.103 0.789 3.418 -0.338 C10 IE5 6 IE5 C13 C6 C 0 1 N N N 175.056 158.820 185.395 4.032 2.184 -1.237 C13 IE5 7 IE5 C15 C7 C 0 1 N N N 170.439 155.312 182.546 -1.629 3.363 0.378 C15 IE5 8 IE5 C17 C8 C 0 1 N N N 169.350 154.813 183.483 -2.507 2.367 0.662 C17 IE5 9 IE5 C20 C9 C 0 1 N N N 167.342 151.437 183.236 -6.288 2.587 0.275 C20 IE5 10 IE5 C21 C10 C 0 1 Y N N 168.830 155.340 188.466 -1.950 -2.585 0.392 C21 IE5 11 IE5 C22 C11 C 0 1 N N N 168.045 154.029 188.686 -3.380 -3.054 0.326 C22 IE5 12 IE5 C26 C12 C 0 1 N N N 169.157 156.017 190.955 -0.808 -4.879 0.129 C26 IE5 13 IE5 C28 C13 C 0 1 N N N 174.383 159.777 182.810 3.561 4.695 -0.883 C28 IE5 14 IE5 "C1'" C14 C 0 1 N N N 173.372 160.861 188.451 4.688 -1.243 1.218 "C1'" IE5 15 IE5 CAC C15 C 0 1 N N N 172.725 159.873 189.521 4.083 -2.358 0.666 CAC IE5 16 IE5 CAB C16 C 0 1 N N N 170.662 158.458 189.376 1.641 -2.975 0.367 CAB IE5 17 IE5 CAA C17 C 0 1 Y N N 169.959 157.231 188.762 0.293 -2.554 0.407 CAA IE5 18 IE5 N6 N2 N 0 1 Y N N 169.837 156.979 187.488 -0.140 -1.263 0.554 N6 IE5 19 IE5 C2 C18 C 0 1 N N N 171.338 156.303 183.442 -0.402 2.744 0.030 C2 IE5 20 IE5 C11 C19 C 0 1 N N N 173.425 157.520 184.105 1.914 2.695 -0.676 C11 IE5 21 IE5 NAA N3 N 0 1 N N N 173.564 156.845 185.303 1.973 1.314 -0.819 NAA IE5 22 IE5 C12 C20 C 0 1 N N N 174.470 157.553 186.050 3.228 0.958 -1.154 C12 IE5 23 IE5 OP3 O1 O 0 1 N N N 174.764 157.186 187.138 3.625 -0.176 -1.354 OP3 IE5 24 IE5 C14 C21 C 0 1 N N N 174.289 158.793 183.977 3.186 3.236 -0.932 C14 IE5 25 IE5 C16 C22 C 0 1 N N N 170.647 154.946 181.046 -1.906 4.843 0.423 C16 IE5 26 IE5 C18 C23 C 0 1 N N N 168.204 153.831 183.108 -3.944 2.529 1.083 C18 IE5 27 IE5 C19 C24 C 0 1 N N N 168.382 152.437 183.764 -4.850 2.425 -0.146 C19 IE5 28 IE5 "O5'" O2 O 0 1 N N N 166.216 151.369 183.773 -7.266 2.531 -0.642 "O5'" IE5 29 IE5 OP1 O3 O 0 1 N N N 167.624 150.694 182.267 -6.561 2.767 1.439 OP1 IE5 30 IE5 "C4'" C25 C 0 1 N N N 166.530 154.236 188.526 -3.854 -3.044 -1.129 "C4'" IE5 31 IE5 "C3'" C26 C 0 1 N N N 165.904 153.093 187.720 -5.285 -3.513 -1.194 "C3'" IE5 32 IE5 "O3'" O4 O 0 1 N N N 165.814 153.176 186.464 -5.866 -3.823 -0.181 "O3'" IE5 33 IE5 O5 O5 O 0 1 N N N 165.489 152.075 188.320 -5.914 -3.585 -2.378 O5 IE5 34 IE5 C25 C27 C 0 1 Y N N 169.310 156.203 189.438 -0.825 -3.382 0.306 C25 IE5 35 IE5 N4 N4 N 0 1 N N N 171.347 159.854 187.453 2.467 -0.902 1.400 N4 IE5 36 IE5 C27 C28 C 0 1 N N N 172.405 160.702 187.299 3.675 -0.372 1.657 C27 IE5 37 IE5 "O2'" O6 O 0 1 N N N 172.554 161.298 186.284 3.865 0.704 2.197 "O2'" IE5 38 IE5 C29 C29 C 0 1 N N N 176.055 159.859 185.927 5.463 2.276 -1.574 C29 IE5 39 IE5 C30 C30 C 0 1 N N N 176.950 159.570 186.866 6.127 1.190 -1.959 C30 IE5 40 IE5 C31 C31 C 0 1 N N N 173.219 159.554 190.954 4.753 -3.532 0.083 C31 IE5 41 IE5 C32 C32 C 0 1 N N N 173.499 160.550 191.772 5.724 -3.367 -0.812 C32 IE5 42 IE5 C33 C33 C 0 1 N N N 174.641 161.722 188.580 6.172 -1.006 1.332 C33 IE5 43 IE5 H3 H2 H 0 1 N N N 167.950 154.645 185.778 -3.387 -0.262 0.919 H3 IE5 44 IE5 H4 H5 H 0 1 N N N 172.858 157.375 182.079 0.815 4.497 -0.355 H4 IE5 45 IE5 H14 H7 H 0 1 N N N 168.382 153.284 187.950 -3.450 -4.066 0.724 H14 IE5 46 IE5 H13 H8 H 0 1 N N N 168.248 153.659 189.702 -4.008 -2.388 0.917 H13 IE5 47 IE5 H19 H9 H 0 1 N N N 170.009 155.439 191.342 -0.797 -5.119 -0.934 H19 IE5 48 IE5 H17 H10 H 0 1 N N N 169.130 157.002 191.444 0.082 -5.291 0.605 H17 IE5 49 IE5 H18 H11 H 0 1 N N N 168.222 155.477 191.166 -1.698 -5.309 0.589 H18 IE5 50 IE5 H21 H12 H 0 1 N N N 175.100 160.574 183.058 3.891 4.952 0.123 H21 IE5 51 IE5 H22 H13 H 0 1 N N N 174.723 159.246 181.909 4.367 4.887 -1.591 H22 IE5 52 IE5 H23 H14 H 0 1 N N N 173.393 160.220 182.623 2.694 5.302 -1.147 H23 IE5 53 IE5 H35 H17 H 0 1 N N N 170.471 158.651 190.421 1.888 -3.963 0.007 H35 IE5 54 IE5 H2 H18 H 0 1 N N N 170.201 157.575 186.772 0.427 -0.482 0.645 H2 IE5 55 IE5 H5 H19 H 0 1 N N N 173.095 156.004 185.573 1.230 0.703 -0.697 H5 IE5 56 IE5 H7 H20 H 0 1 N N N 169.863 154.243 180.727 -1.006 5.390 0.143 H7 IE5 57 IE5 H6 H21 H 0 1 N N N 170.591 155.859 180.435 -2.709 5.083 -0.274 H6 IE5 58 IE5 H8 H22 H 0 1 N N N 171.634 154.478 180.916 -2.205 5.126 1.433 H8 IE5 59 IE5 H10 H23 H 0 1 N N N 167.248 154.260 183.443 -4.205 1.745 1.794 H10 IE5 60 IE5 H9 H24 H 0 1 N N N 168.188 153.708 182.015 -4.078 3.504 1.551 H9 IE5 61 IE5 H11 H25 H 0 1 N N N 169.390 152.060 183.537 -4.717 1.449 -0.614 H11 IE5 62 IE5 H12 H26 H 0 1 N N N 168.264 152.535 184.853 -4.589 3.208 -0.857 H12 IE5 63 IE5 H36 H27 H 0 1 N N N 165.694 150.709 183.332 -8.173 2.641 -0.324 H36 IE5 64 IE5 H15 H28 H 0 1 N N N 166.350 155.187 188.003 -3.785 -2.031 -1.526 H15 IE5 65 IE5 H16 H29 H 0 1 N N N 166.064 154.272 189.522 -3.226 -3.710 -1.720 H16 IE5 66 IE5 H37 H30 H 0 1 N N N 165.135 151.458 187.690 -6.831 -3.891 -2.370 H37 IE5 67 IE5 H20 H31 H 0 1 N N N 170.624 159.657 186.790 1.616 -0.489 1.612 H20 IE5 68 IE5 H24 H32 H 0 1 N N N 176.029 160.860 185.523 5.973 3.226 -1.509 H24 IE5 69 IE5 H26 H33 H 0 1 N N N 177.634 160.330 187.212 5.598 0.261 -2.114 H26 IE5 70 IE5 H25 H34 H 0 1 N N N 176.993 158.575 187.283 7.194 1.236 -2.115 H25 IE5 71 IE5 H27 H35 H 0 1 N N N 173.333 158.530 191.279 4.457 -4.527 0.381 H27 IE5 72 IE5 H53 H36 H 0 1 N N N 173.845 160.345 192.774 6.069 -2.374 -1.058 H53 IE5 73 IE5 H29 H37 H 0 1 N N N 173.383 161.571 191.439 6.167 -4.227 -1.293 H29 IE5 74 IE5 H30 H38 H 0 1 N N N 175.085 161.575 189.576 6.514 -0.424 0.477 H30 IE5 75 IE5 H31 H39 H 0 1 N N N 175.366 161.425 187.808 6.383 -0.459 2.251 H31 IE5 76 IE5 H32 H40 H 0 1 N N N 174.379 162.782 188.448 6.692 -1.964 1.352 H32 IE5 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IE5 C16 C15 SING N N 1 IE5 OP1 C20 DOUB N N 2 IE5 C15 C2 SING N N 3 IE5 C15 C17 DOUB N N 4 IE5 C28 C14 SING N N 5 IE5 C10 C2 SING N N 6 IE5 C10 C11 DOUB N Z 7 IE5 C18 C17 SING N N 8 IE5 C18 C19 SING N N 9 IE5 C20 C19 SING N N 10 IE5 C20 "O5'" SING N N 11 IE5 C2 N3 DOUB N N 12 IE5 C17 C4 SING N N 13 IE5 C14 C11 SING N N 14 IE5 C14 C13 DOUB N N 15 IE5 C11 NAA SING N N 16 IE5 C4 N3 SING N N 17 IE5 C4 C5 DOUB N Z 18 IE5 NAA C12 SING N N 19 IE5 C13 C29 SING N N 20 IE5 C13 C12 SING N N 21 IE5 C5 C6 SING N N 22 IE5 C29 C30 DOUB N N 23 IE5 C12 OP3 DOUB N N 24 IE5 "O2'" C27 DOUB N N 25 IE5 "O3'" "C3'" DOUB N N 26 IE5 C6 N6 SING Y N 27 IE5 C6 C21 DOUB Y N 28 IE5 C27 N4 SING N N 29 IE5 C27 "C1'" SING N N 30 IE5 N4 C8 SING N N 31 IE5 N6 CAA SING Y N 32 IE5 "C3'" O5 SING N N 33 IE5 "C3'" "C4'" SING N N 34 IE5 "C1'" C33 SING N N 35 IE5 "C1'" CAC DOUB N N 36 IE5 C21 C22 SING N N 37 IE5 C21 C25 SING Y N 38 IE5 "C4'" C22 SING N N 39 IE5 C8 CAB DOUB N Z 40 IE5 C8 CAC SING N N 41 IE5 CAA CAB SING N N 42 IE5 CAA C25 DOUB Y N 43 IE5 C25 C26 SING N N 44 IE5 CAC C31 SING N N 45 IE5 C31 C32 DOUB N N 46 IE5 C5 H3 SING N N 47 IE5 C10 H4 SING N N 48 IE5 C22 H14 SING N N 49 IE5 C22 H13 SING N N 50 IE5 C26 H19 SING N N 51 IE5 C26 H17 SING N N 52 IE5 C26 H18 SING N N 53 IE5 C28 H21 SING N N 54 IE5 C28 H22 SING N N 55 IE5 C28 H23 SING N N 56 IE5 CAB H35 SING N N 57 IE5 N6 H2 SING N N 58 IE5 NAA H5 SING N N 59 IE5 C16 H7 SING N N 60 IE5 C16 H6 SING N N 61 IE5 C16 H8 SING N N 62 IE5 C18 H10 SING N N 63 IE5 C18 H9 SING N N 64 IE5 C19 H11 SING N N 65 IE5 C19 H12 SING N N 66 IE5 "O5'" H36 SING N N 67 IE5 "C4'" H15 SING N N 68 IE5 "C4'" H16 SING N N 69 IE5 O5 H37 SING N N 70 IE5 N4 H20 SING N N 71 IE5 C29 H24 SING N N 72 IE5 C30 H26 SING N N 73 IE5 C30 H25 SING N N 74 IE5 C31 H27 SING N N 75 IE5 C32 H53 SING N N 76 IE5 C32 H29 SING N N 77 IE5 C33 H30 SING N N 78 IE5 C33 H31 SING N N 79 IE5 C33 H32 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IE5 InChI InChI 1.06 "InChI=1S/C33H34N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,35H,1-2,9-12H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14-,28-15-" IE5 InChIKey InChI 1.06 QBUVFDKTZJNUPP-BBROENKCSA-N IE5 SMILES_CANONICAL CACTVS 3.385 "Cc1c([nH]c(\C=C2/N=C(\C=C3/NC(=O)C(=C3C)C=C)C(=C2CCC(O)=O)C)c1CCC(O)=O)/C=C/4NC(=O)C(=C/4C=C)C" IE5 SMILES CACTVS 3.385 "Cc1c([nH]c(C=C2N=C(C=C3NC(=O)C(=C3C)C=C)C(=C2CCC(O)=O)C)c1CCC(O)=O)C=C4NC(=O)C(=C4C=C)C" IE5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c([nH]c1C=C2C(=C(C(=O)N2)C)C=C)/C=C\3/C(=C(C(=N3)/C=C\4/C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O" IE5 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c([nH]c1C=C2C(=C(C(=O)N2)C)C=C)C=C3C(=C(C(=N3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id IE5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[5-[(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IE5 "Create component" 2022-06-27 PDBJ IE5 "Other modification" 2023-05-15 PDBJ IE5 "Initial release" 2023-05-24 RCSB IE5 "Modify name" 2023-09-20 PDBJ # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IE5 _pdbx_chem_comp_synonyms.name "3-[5-[(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #