data_IS3 # _chem_comp.id IS3 _chem_comp.name "Isopentenyl Diphosphate Beta-S" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H14 O6 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "O-(3-methylbutyl) trihydrogen thiodiphosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-10-21 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.174 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IS3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3K56 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IS3 O O O 0 1 N N N 26.441 20.602 31.224 1.312 -0.267 0.194 O IS3 1 IS3 C1 C1 C 0 1 N N N 29.074 19.111 32.397 -2.641 0.274 0.164 C1 IS3 2 IS3 O1 O1 O 0 1 N N N 28.868 20.347 31.737 -1.317 -0.257 0.242 O1 IS3 3 IS3 P1 P1 P 0 1 N N N 27.624 21.341 32.021 0.001 0.668 0.222 P1 IS3 4 IS3 C2 C2 C 0 1 N N N 30.402 18.644 31.819 -3.654 -0.873 0.209 C2 IS3 5 IS3 O2 O2 O 0 1 N N N 27.885 22.665 31.316 0.029 1.592 1.540 O2 IS3 6 IS3 P2 P2 P 0 1 N N N 25.030 20.024 31.805 2.866 -0.004 -0.134 P2 IS3 7 IS3 C3 C3 C 0 1 N N N 30.760 17.238 32.272 -5.072 -0.304 0.126 C3 IS3 8 IS3 O3 O3 O 0 1 N N N 27.472 21.237 33.516 -0.018 1.527 -0.983 O3 IS3 9 IS3 C4 C4 C 0 1 N N N 29.942 16.571 33.362 -5.275 0.362 -1.236 C4 IS3 10 IS3 O4 O4 O 0 1 N N N 25.310 19.651 33.270 3.406 1.000 0.811 O4 IS3 11 IS3 C5 C5 C 0 1 N N N 31.794 16.602 31.716 -6.086 -1.437 0.296 C5 IS3 12 IS3 O5 O5 O 0 1 N N N 24.653 18.843 30.876 3.012 0.544 -1.640 O5 IS3 13 IS3 S6 S6 S 0 1 N N N 23.621 21.445 31.588 3.947 -1.816 0.067 S6 IS3 14 IS3 H1 H1 H 0 1 N N N 29.124 19.234 33.489 -2.814 0.944 1.006 H1 IS3 15 IS3 H1A H1A H 0 1 N N N 28.264 18.396 32.190 -2.758 0.825 -0.769 H1A IS3 16 IS3 H2 H2 H 0 1 N N N 30.329 18.651 30.721 -3.481 -1.543 -0.632 H2 IS3 17 IS3 H2A H2A H 0 1 N N N 31.192 19.332 32.154 -3.537 -1.424 1.143 H2A IS3 18 IS3 H4 H4 H 0 1 N N N 30.342 15.565 33.558 -6.285 0.767 -1.295 H4 IS3 19 IS3 H4A H4A H 0 1 N N N 29.996 17.173 34.281 -4.552 1.169 -1.357 H4A IS3 20 IS3 H4B H4B H 0 1 N N N 28.894 16.491 33.037 -5.132 -0.375 -2.026 H4B IS3 21 IS3 H5 H5 H 0 1 N N N 31.898 15.605 32.168 -5.941 -1.912 1.267 H5 IS3 22 IS3 H5A H5A H 0 1 N N N 31.622 16.498 30.635 -7.096 -1.032 0.237 H5A IS3 23 IS3 H10 H10 H 0 1 N N N 27.930 23.363 31.959 0.042 1.094 2.369 H10 IS3 24 IS3 H11 H11 H 0 1 N N N 30.788 16.229 31.835 -5.214 0.433 0.916 H11 IS3 25 IS3 H12 H12 H 0 1 N N N 32.714 17.180 31.887 -5.943 -2.174 -0.494 H12 IS3 26 IS3 H13 H13 H 0 1 N N N 24.653 18.035 31.375 2.677 -0.063 -2.314 H13 IS3 27 IS3 H14 H14 H 0 1 N N N 23.294 21.692 32.822 5.207 -1.452 -0.231 H14 IS3 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IS3 O P1 SING N N 1 IS3 O P2 SING N N 2 IS3 C1 O1 SING N N 3 IS3 C1 C2 SING N N 4 IS3 C1 H1 SING N N 5 IS3 C1 H1A SING N N 6 IS3 O1 P1 SING N N 7 IS3 P1 O2 SING N N 8 IS3 P1 O3 DOUB N N 9 IS3 C2 C3 SING N N 10 IS3 C2 H2 SING N N 11 IS3 C2 H2A SING N N 12 IS3 P2 O4 DOUB N N 13 IS3 P2 O5 SING N N 14 IS3 P2 S6 SING N N 15 IS3 C3 C4 SING N N 16 IS3 C3 C5 SING N N 17 IS3 C4 H4 SING N N 18 IS3 C4 H4A SING N N 19 IS3 C4 H4B SING N N 20 IS3 C5 H5 SING N N 21 IS3 C5 H5A SING N N 22 IS3 O2 H10 SING N N 23 IS3 C3 H11 SING N N 24 IS3 C5 H12 SING N N 25 IS3 O5 H13 SING N N 26 IS3 S6 H14 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IS3 SMILES ACDLabs 11.02 "O=P(O)(OP(=O)(OCCC(C)C)O)S" IS3 SMILES_CANONICAL CACTVS 3.352 "CC(C)CCO[P](O)(=O)O[P](O)(S)=O" IS3 SMILES CACTVS 3.352 "CC(C)CCO[P](O)(=O)O[P](O)(S)=O" IS3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)CCO[P@@](=O)(O)O[P@](=O)(O)S" IS3 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)CCOP(=O)(O)OP(=O)(O)S" IS3 InChI InChI 1.03 "InChI=1S/C5H14O6P2S/c1-5(2)3-4-10-12(6,7)11-13(8,9)14/h5H,3-4H2,1-2H3,(H,6,7)(H2,8,9,14)" IS3 InChIKey InChI 1.03 JPPCYMVZXKAWTF-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IS3 "SYSTEMATIC NAME" ACDLabs 11.02 "O-(3-methylbutyl) trihydrogen thiodiphosphate" IS3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[hydroxy(3-methylbutoxy)phosphoryl]oxy-sulfanyl-phosphinic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IS3 "Create component" 2009-10-21 RCSB IS3 "Modify descriptor" 2011-06-04 RCSB IS3 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IS3 _pdbx_chem_comp_synonyms.name "O-(3-methylbutyl) trihydrogen thiodiphosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##