data_IVG # _chem_comp.id IVG _chem_comp.name "D-Xylose, 4-O-beta-D-xylopyranosyl-" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C10 H18 O9" _chem_comp.mon_nstd_parent_comp_id XYP _chem_comp.pdbx_synonyms Xylobiose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-14 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.245 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IVG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZB3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IVG O8 O1 O 0 1 N N N -27.709 33.028 34.545 -3.319 -0.810 -0.434 O8 IVG 1 IVG O4 O2 O 0 1 N N N -22.960 37.746 37.204 4.719 1.076 0.896 O4 IVG 2 IVG O1 O3 O 0 1 N N N -25.224 34.208 33.619 -0.477 -0.575 -0.077 O1 IVG 3 IVG O6 O4 O 0 1 N N N -26.763 33.862 36.990 -1.570 1.457 -0.675 O6 IVG 4 IVG O5 O5 O 0 1 N N N -24.103 34.620 35.639 1.090 0.642 1.152 O5 IVG 5 IVG O9 O6 O 0 1 N N N -25.367 30.602 32.876 -2.209 -2.865 0.048 O9 IVG 6 IVG O3 O7 O 0 1 N N N -24.184 38.672 34.782 4.060 -0.039 -1.654 O3 IVG 7 IVG O7 O8 O 0 1 N N N -26.134 30.781 37.876 -3.941 2.430 -1.142 O7 IVG 8 IVG O2 O9 O 0 1 N N N -23.994 36.809 32.640 1.627 -1.540 -1.742 O2 IVG 9 IVG C4 C1 C 0 1 N N R -23.715 36.886 36.342 3.372 0.977 0.431 C4 IVG 10 IVG C5 C2 C 0 1 N N N -23.203 35.459 36.388 2.430 0.798 1.624 C5 IVG 11 IVG C1 C3 C 0 1 N N S -24.135 34.919 34.207 0.895 -0.500 0.315 C1 IVG 12 IVG C9 C4 C 0 1 N N R -25.345 32.771 33.967 -1.379 -0.808 1.007 C9 IVG 13 IVG C10 C5 C 0 1 N N N -25.469 32.008 32.653 -1.567 -2.314 1.199 C10 IVG 14 IVG C6 C6 C 0 1 N N R -26.487 32.384 34.914 -2.730 -0.161 0.695 C6 IVG 15 IVG C7 C7 C 0 1 N N R -26.251 32.623 36.425 -2.524 1.322 0.380 C7 IVG 16 IVG C8 C8 C 0 1 N N N -26.844 31.430 37.176 -3.835 1.931 -0.047 C8 IVG 17 IVG C2 C9 C 0 1 N N R -24.376 36.424 33.954 1.776 -0.373 -0.931 C2 IVG 18 IVG C3 C10 C 0 1 N N S -23.630 37.359 34.901 3.239 -0.232 -0.501 C3 IVG 19 IVG H5 H1 H 0 1 N N N -28.397 32.771 35.147 -2.786 -0.761 -1.239 H5 IVG 20 IVG HO4 H2 H 0 1 N N N -23.025 37.434 38.099 4.875 1.818 1.496 HO4 IVG 21 IVG H11 H3 H 0 1 N N N -26.559 33.896 37.917 -1.831 1.024 -1.500 H11 IVG 22 IVG H13 H4 H 0 1 N N N -25.446 30.143 32.048 -2.361 -3.818 0.100 H13 IVG 23 IVG HO3 H5 H 0 1 N N N -23.727 39.264 35.368 5.001 0.058 -1.455 HO3 IVG 24 IVG HO2 H6 H 0 1 N N N -24.156 37.738 32.522 0.722 -1.694 -2.047 HO2 IVG 25 IVG H52 H7 H 0 1 N N N -24.771 36.889 36.649 3.106 1.886 -0.110 H52 IVG 26 IVG H51 H8 H 0 1 N N N -23.159 35.115 37.432 2.488 1.675 2.268 H51 IVG 27 IVG H9 H9 H 0 1 N N N -22.198 35.412 35.944 2.722 -0.088 2.188 H9 IVG 28 IVG H1 H10 H 0 1 N N N -23.184 34.626 33.739 1.167 -1.402 0.862 H1 IVG 29 IVG H6 H11 H 0 1 N N N -24.404 32.457 34.443 -0.970 -0.373 1.919 H6 IVG 30 IVG H8 H12 H 0 1 N N N -24.664 32.325 31.974 -2.183 -2.494 2.080 H8 IVG 31 IVG H7 H13 H 0 1 N N N -26.444 32.232 32.196 -0.594 -2.787 1.334 H7 IVG 32 IVG H10 H14 H 0 1 N N N -26.634 31.300 34.795 -3.389 -0.262 1.557 H10 IVG 33 IVG H12 H15 H 0 1 N N N -25.163 32.599 36.587 -2.158 1.835 1.269 H12 IVG 34 IVG H14 H16 H 0 1 N N N -27.890 31.181 37.073 -4.679 1.922 0.626 H14 IVG 35 IVG H2 H17 H 0 1 N N N -25.453 36.610 34.082 1.476 0.507 -1.500 H2 IVG 36 IVG H3 H18 H 0 1 N N N -22.571 37.378 34.604 3.553 -1.134 0.024 H3 IVG 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IVG O2 C2 SING N N 1 IVG C10 O9 SING N N 2 IVG C10 C9 SING N N 3 IVG O1 C9 SING N N 4 IVG O1 C1 SING N N 5 IVG C2 C1 SING N N 6 IVG C2 C3 SING N N 7 IVG C9 C6 SING N N 8 IVG C1 O5 SING N N 9 IVG O8 C6 SING N N 10 IVG O3 C3 SING N N 11 IVG C3 C4 SING N N 12 IVG C6 C7 SING N N 13 IVG O5 C5 SING N N 14 IVG C4 C5 SING N N 15 IVG C4 O4 SING N N 16 IVG C7 O6 SING N N 17 IVG C7 C8 SING N N 18 IVG C8 O7 DOUB N N 19 IVG O8 H5 SING N N 20 IVG O4 HO4 SING N N 21 IVG O6 H11 SING N N 22 IVG O9 H13 SING N N 23 IVG O3 HO3 SING N N 24 IVG O2 HO2 SING N N 25 IVG C4 H52 SING N N 26 IVG C5 H51 SING N N 27 IVG C5 H9 SING N N 28 IVG C1 H1 SING N N 29 IVG C9 H6 SING N N 30 IVG C10 H8 SING N N 31 IVG C10 H7 SING N N 32 IVG C6 H10 SING N N 33 IVG C7 H12 SING N N 34 IVG C8 H14 SING N N 35 IVG C2 H2 SING N N 36 IVG C3 H3 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IVG InChI InChI 1.06 "InChI=1S/C10H18O9/c11-1-4(13)7(15)6(2-12)19-10-9(17)8(16)5(14)3-18-10/h1,4-10,12-17H,2-3H2/t4-,5+,6+,7+,8-,9+,10-/m0/s1" IVG InChIKey InChI 1.06 SQNRKWHRVIAKLP-RSZZQXBVSA-N IVG SMILES_CANONICAL CACTVS 3.385 "OC[C@@H](O[C@@H]1OC[C@@H](O)[C@H](O)[C@H]1O)[C@H](O)[C@@H](O)C=O" IVG SMILES CACTVS 3.385 "OC[CH](O[CH]1OC[CH](O)[CH](O)[CH]1O)[CH](O)[CH](O)C=O" IVG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]([C@H]([C@@H](O1)O[C@H](CO)[C@@H]([C@H](C=O)O)O)O)O)O" IVG SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)OC(CO)C(C(C=O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id IVG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{R})-2,3,5-tris(oxidanyl)-4-[(2~{S},3~{R},4~{S},5~{R})-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-pentanal" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IVG _pdbx_chem_comp_synonyms.name Xylobiose _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IVG "Create component" 2022-04-14 PDBE IVG "Modify descriptor" 2022-08-22 RCSB IVG "Initial release" 2023-04-05 RCSB #