data_J3L # _chem_comp.id J3L _chem_comp.name "(2S)-3-methyl-2-[[(2S,4R)-1-methyl-4-[(2E,4E)-octa-2,4-dienoyl]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]methyl]-2-oxidanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-31 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 365.421 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J3L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EGV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J3L C13 C1 C 0 1 N N N 35.068 -20.899 37.011 2.158 3.159 1.280 C13 J3L 1 J3L C14 C2 C 0 1 N N S 32.790 -21.733 35.856 2.056 1.078 -0.257 C14 J3L 2 J3L C15 C3 C 0 1 N N N 32.167 -21.529 37.251 2.619 0.116 0.792 C15 J3L 3 J3L C16 C4 C 0 1 N N S 31.395 -22.634 38.073 3.525 -0.910 0.109 C16 J3L 4 J3L C24 C5 C 0 1 N N N 32.323 -20.863 34.873 0.980 0.385 -1.064 C24 J3L 5 J3L O22 O1 O 0 1 N N N 30.536 -24.847 37.870 5.382 0.698 -0.134 O22 J3L 6 J3L C01 C6 C 0 1 N N N 35.280 -13.929 32.960 -9.655 -1.160 -0.400 C01 J3L 7 J3L C02 C7 C 0 1 N N N 34.380 -13.600 31.747 -8.176 -1.483 -0.181 C02 J3L 8 J3L C03 C8 C 0 1 N N N 34.610 -14.601 30.557 -7.458 -0.244 0.360 C03 J3L 9 J3L C04 C9 C 0 1 N N N 33.917 -15.944 30.901 -6.001 -0.562 0.576 C04 J3L 10 J3L C05 C10 C 0 1 N N N 34.088 -17.045 30.137 -5.061 0.193 0.001 C05 J3L 11 J3L C06 C11 C 0 1 N N N 33.325 -18.298 30.614 -3.648 -0.115 0.210 C06 J3L 12 J3L C07 C12 C 0 1 N N N 33.489 -18.689 31.879 -2.692 0.651 -0.374 C07 J3L 13 J3L C08 C13 C 0 1 N N N 32.730 -19.919 32.430 -1.331 0.354 -0.172 C08 J3L 14 J3L C09 C14 C 0 1 N N R 33.171 -20.619 33.780 -0.270 1.205 -0.822 C09 J3L 15 J3L C10 C15 C 0 1 N N N 34.488 -20.518 34.477 0.137 2.323 0.105 C10 J3L 16 J3L C18 C16 C 0 1 N N N 32.070 -22.746 39.471 4.216 -1.767 1.172 C18 J3L 17 J3L C19 C17 C 0 1 N N N 31.494 -23.768 40.517 3.161 -2.493 2.007 C19 J3L 18 J3L C20 C18 C 0 1 N N N 33.586 -22.904 39.269 5.122 -2.793 0.489 C20 J3L 19 J3L C21 C19 C 0 1 N N N 31.407 -24.011 37.494 4.564 -0.194 -0.714 C21 J3L 20 J3L N12 N1 N 0 1 N N N 34.311 -21.309 35.831 1.442 2.228 0.403 N12 J3L 21 J3L O11 O2 O 0 1 N N N 35.668 -19.822 34.085 -0.608 3.185 0.520 O11 J3L 22 J3L O17 O3 O 0 1 N N N 30.058 -22.248 38.262 2.739 -1.748 -0.741 O17 J3L 23 J3L O23 O4 O 0 1 N N N 32.285 -24.341 36.660 4.661 -0.423 -1.897 O23 J3L 24 J3L O25 O5 O 0 1 N N N 31.276 -20.307 34.952 1.093 -0.603 -1.749 O25 J3L 25 J3L O26 O6 O 0 1 N N N 31.804 -20.330 31.818 -1.011 -0.588 0.525 O26 J3L 26 J3L H1 H1 H 0 1 N N N 34.819 -21.559 37.855 1.495 3.978 1.558 H1 J3L 27 J3L H2 H2 H 0 1 N N N 36.145 -20.967 36.798 2.484 2.634 2.177 H2 J3L 28 J3L H3 H3 H 0 1 N N N 34.811 -19.861 37.269 3.026 3.557 0.755 H3 J3L 29 J3L H4 H4 H 0 1 N N N 32.699 -22.787 35.555 2.856 1.413 -0.918 H4 J3L 30 J3L H5 H5 H 0 1 N N N 32.997 -21.210 37.898 3.196 0.678 1.527 H5 J3L 31 J3L H6 H6 H 0 1 N N N 31.454 -20.700 37.134 1.798 -0.398 1.290 H6 J3L 32 J3L H7 H7 H 0 1 N N N 30.682 -25.677 37.431 5.981 1.187 -0.715 H7 J3L 33 J3L H8 H8 H 0 1 N N N 35.087 -13.207 33.767 -10.106 -0.863 0.546 H8 J3L 34 J3L H9 H9 H 0 1 N N N 35.057 -14.945 33.317 -9.747 -0.345 -1.118 H9 J3L 35 J3L H10 H10 H 0 1 N N N 36.336 -13.870 32.659 -10.166 -2.042 -0.785 H10 J3L 36 J3L H11 H11 H 0 1 N N N 34.606 -12.580 31.403 -8.084 -2.298 0.537 H11 J3L 37 J3L H12 H12 H 0 1 N N N 33.327 -13.656 32.060 -7.724 -1.780 -1.128 H12 J3L 38 J3L H13 H13 H 0 1 N N N 35.688 -14.766 30.414 -7.550 0.571 -0.358 H13 J3L 39 J3L H14 H14 H 0 1 N N N 34.177 -14.186 29.635 -7.910 0.053 1.306 H14 J3L 40 J3L H15 H15 H 0 1 N N N 33.282 -16.001 31.773 -5.717 -1.399 1.196 H15 J3L 41 J3L H16 H16 H 0 1 N N N 34.713 -17.048 29.256 -5.345 1.030 -0.619 H16 J3L 42 J3L H17 H17 H 0 1 N N N 32.677 -18.843 29.943 -3.364 -0.953 0.830 H17 J3L 43 J3L H18 H18 H 0 1 N N N 34.159 -18.141 32.525 -2.976 1.489 -0.994 H18 J3L 44 J3L H19 H19 H 0 1 N N N 33.265 -21.646 33.399 -0.641 1.613 -1.762 H19 J3L 45 J3L H20 H20 H 0 1 N N N 31.939 -21.757 39.935 4.816 -1.127 1.820 H20 J3L 46 J3L H21 H21 H 0 1 N N N 32.085 -23.718 41.443 3.654 -3.103 2.764 H21 J3L 47 J3L H22 H22 H 0 1 N N N 30.446 -23.516 40.737 2.516 -1.762 2.494 H22 J3L 48 J3L H23 H23 H 0 1 N N N 31.548 -24.786 40.103 2.562 -3.133 1.359 H23 J3L 49 J3L H24 H24 H 0 1 N N N 34.080 -22.985 40.248 5.874 -2.276 -0.107 H24 J3L 50 J3L H25 H25 H 0 1 N N N 33.785 -23.813 38.682 5.615 -3.403 1.246 H25 J3L 51 J3L H26 H26 H 0 1 N N N 33.978 -22.028 38.732 4.523 -3.433 -0.159 H26 J3L 52 J3L H27 H27 H 0 1 N N N 29.601 -22.918 38.757 2.048 -2.241 -0.277 H27 J3L 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J3L C05 C06 SING N N 1 J3L C05 C04 DOUB N E 2 J3L C03 C04 SING N N 3 J3L C03 C02 SING N N 4 J3L C06 C07 DOUB N E 5 J3L C02 C01 SING N N 6 J3L O26 C08 DOUB N N 7 J3L C07 C08 SING N N 8 J3L C08 C09 SING N N 9 J3L C09 C10 SING N N 10 J3L C09 C24 SING N N 11 J3L O11 C10 DOUB N N 12 J3L C10 N12 SING N N 13 J3L C24 O25 DOUB N N 14 J3L C24 C14 SING N N 15 J3L N12 C14 SING N N 16 J3L N12 C13 SING N N 17 J3L C14 C15 SING N N 18 J3L O23 C21 DOUB N N 19 J3L C15 C16 SING N N 20 J3L C21 O22 SING N N 21 J3L C21 C16 SING N N 22 J3L C16 O17 SING N N 23 J3L C16 C18 SING N N 24 J3L C20 C18 SING N N 25 J3L C18 C19 SING N N 26 J3L C13 H1 SING N N 27 J3L C13 H2 SING N N 28 J3L C13 H3 SING N N 29 J3L C14 H4 SING N N 30 J3L C15 H5 SING N N 31 J3L C15 H6 SING N N 32 J3L O22 H7 SING N N 33 J3L C01 H8 SING N N 34 J3L C01 H9 SING N N 35 J3L C01 H10 SING N N 36 J3L C02 H11 SING N N 37 J3L C02 H12 SING N N 38 J3L C03 H13 SING N N 39 J3L C03 H14 SING N N 40 J3L C04 H15 SING N N 41 J3L C05 H16 SING N N 42 J3L C06 H17 SING N N 43 J3L C07 H18 SING N N 44 J3L C09 H19 SING N N 45 J3L C18 H20 SING N N 46 J3L C19 H21 SING N N 47 J3L C19 H22 SING N N 48 J3L C19 H23 SING N N 49 J3L C20 H24 SING N N 50 J3L C20 H25 SING N N 51 J3L C20 H26 SING N N 52 J3L O17 H27 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J3L InChI InChI 1.03 "InChI=1S/C19H27NO6/c1-5-6-7-8-9-10-14(21)15-16(22)13(20(4)17(15)23)11-19(26,12(2)3)18(24)25/h7-10,12-13,15,26H,5-6,11H2,1-4H3,(H,24,25)/b8-7+,10-9+/t13-,15+,19-/m0/s1" J3L InChIKey InChI 1.03 QTGRXFMVJJTPSQ-IGSUIHLESA-N J3L SMILES_CANONICAL CACTVS 3.385 "CCC/C=C/C=C/C(=O)[C@@H]1C(=O)[C@H](C[C@](O)(C(C)C)C(O)=O)N(C)C1=O" J3L SMILES CACTVS 3.385 "CCCC=CC=CC(=O)[CH]1C(=O)[CH](C[C](O)(C(C)C)C(O)=O)N(C)C1=O" J3L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC/C=C/C=C/C(=O)[C@@H]1C(=O)[C@@H](N(C1=O)C)C[C@](C(C)C)(C(=O)O)O" J3L SMILES "OpenEye OEToolkits" 2.0.7 "CCCC=CC=CC(=O)C1C(=O)C(N(C1=O)C)CC(C(C)C)(C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id J3L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-3-methyl-2-[[(2~{S},4~{R})-1-methyl-4-[(2~{E},4~{E})-octa-2,4-dienoyl]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]methyl]-2-oxidanyl-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J3L "Create component" 2021-03-31 PDBJ J3L "Initial release" 2021-06-30 RCSB ##