data_J4D # _chem_comp.id J4D _chem_comp.name "N-[2-hydroxy-3-nitro-5-(nitrosulfonyl)phenyl]-N'-(pentafluorophenyl)urea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H5 F5 N4 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-09 _chem_comp.pdbx_modified_date 2024-04-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.258 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J4D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ECZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J4D C13 C1 C 0 1 Y N N N N N -0.951 8.630 13.693 4.406 1.162 0.806 C13 J4D 1 J4D C15 C2 C 0 1 Y N N N N N 1.153 8.184 12.549 5.519 -0.629 -0.341 C15 J4D 2 J4D C17 C3 C 0 1 Y N N N N N -0.781 6.798 12.140 3.249 -0.083 -0.896 C17 J4D 3 J4D C01 C4 C 0 1 Y N N N N N -4.986 1.161 13.865 -3.998 0.232 0.163 C01 J4D 4 J4D C02 C5 C 0 1 Y N N N N N -4.725 1.752 12.645 -3.840 1.559 -0.195 C02 J4D 5 J4D C03 C6 C 0 1 Y N N N N N -4.650 3.138 12.585 -2.582 2.137 -0.172 C03 J4D 6 J4D C04 C7 C 0 1 Y N N N N N -4.846 3.917 13.736 -1.478 1.380 0.211 C04 J4D 7 J4D C05 C8 C 0 1 Y N N N N N -5.114 3.309 14.955 -1.644 0.050 0.568 C05 J4D 8 J4D C06 C9 C 0 1 Y N N N N N -5.183 1.923 15.003 -2.903 -0.520 0.543 C06 J4D 9 J4D O07 O1 O 0 1 N N N N N N -4.375 3.743 11.355 -2.425 3.441 -0.524 O07 J4D 10 J4D N08 N1 N 0 1 N N N N N N -4.735 5.362 13.628 -0.202 1.959 0.236 N08 J4D 11 J4D C09 C10 C 0 1 N N N N N N -3.359 5.801 13.427 0.893 1.183 0.116 C09 J4D 12 J4D N10 N2 N 0 1 N N N N N N -2.952 7.197 13.272 2.121 1.725 0.250 N10 J4D 13 J4D O11 O2 O 0 1 N N N N N N -2.527 4.953 13.387 0.775 -0.005 -0.113 O11 J4D 14 J4D C12 C11 C 0 1 Y N N N N N -1.546 7.547 13.047 3.262 0.933 0.052 C12 J4D 15 J4D C14 C12 C 0 1 Y N N N N N 0.390 8.948 13.449 5.534 0.383 0.607 C14 J4D 16 J4D C16 C13 C 0 1 Y N N N N N 0.558 7.101 11.895 4.376 -0.863 -1.089 C16 J4D 17 J4D F18 F1 F 0 1 N N N N N N -1.325 5.727 11.481 2.137 -0.307 -1.630 F18 J4D 18 J4D F19 F2 F 0 1 N N N N N N 1.272 6.328 11.007 4.364 -1.850 -2.012 F19 J4D 19 J4D F20 F3 F 0 1 N N N N N N 2.476 8.489 12.308 6.620 -1.388 -0.535 F20 J4D 20 J4D F21 F4 F 0 1 N N N N N N 0.954 10.017 14.103 6.649 0.609 1.335 F21 J4D 21 J4D F22 F5 F 0 1 N N N N N N -1.670 9.386 14.574 4.421 2.148 1.729 F22 J4D 22 J4D N23 N3 N 1 1 N N N N N N -4.547 0.881 11.476 -5.016 2.361 -0.601 N23 J4D 23 J4D O24 O3 O 0 1 N N N N N N -4.872 1.233 10.396 -4.877 3.529 -0.916 O24 J4D 24 J4D O25 O4 O -1 1 N N N N N N -4.017 -0.413 11.650 -6.123 1.852 -0.621 O25 J4D 25 J4D S26 S1 S 0 1 N N N N N N -5.545 1.011 16.524 -3.113 -2.208 1.004 S26 J4D 26 J4D O27 O5 O 0 1 N N N N N N -6.917 1.262 16.939 -2.009 -2.537 1.836 O27 J4D 27 J4D O28 O6 O 0 1 N N N N N N -4.752 1.450 17.671 -4.466 -2.345 1.418 O28 J4D 28 J4D N29 N4 N 1 1 N N N N N N -5.339 -0.657 16.238 -2.951 -3.115 -0.371 N29 J4D 29 J4D H1 H1 H 0 1 N N N N N N -5.037 0.084 13.932 -4.981 -0.216 0.149 H1 J4D 30 J4D H2 H2 H 0 1 N N N N N N -5.265 3.901 15.846 -0.790 -0.540 0.866 H2 J4D 31 J4D H3 H3 H 0 1 N N N N N N -4.455 3.100 10.660 -2.506 4.061 0.214 H3 J4D 32 J4D H4 H4 H 0 1 N N N N N N -5.515 5.985 13.685 -0.107 2.919 0.339 H4 J4D 33 J4D H5 H5 H 0 1 N N N N N N -3.640 7.921 13.320 2.215 2.662 0.482 H5 J4D 34 J4D O1 O7 O 0 1 N N N N N N ? ? ? -2.514 -4.251 -0.303 O1 J4D 35 J4D O2 O8 O -1 1 N N N N N N ? ? ? -3.267 -2.648 -1.450 O2 J4D 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J4D O24 N23 DOUB N N 1 J4D F19 C16 SING N N 2 J4D O07 C03 SING N N 3 J4D N23 O25 SING N N 4 J4D N23 C02 SING N N 5 J4D F18 C17 SING N N 6 J4D C16 C17 DOUB Y N 7 J4D C16 C15 SING Y N 8 J4D C17 C12 SING Y N 9 J4D F20 C15 SING N N 10 J4D C15 C14 DOUB Y N 11 J4D C03 C02 DOUB Y N 12 J4D C03 C04 SING Y N 13 J4D C02 C01 SING Y N 14 J4D C12 N10 SING N N 15 J4D C12 C13 DOUB Y N 16 J4D N10 C09 SING N N 17 J4D O11 C09 DOUB N N 18 J4D C09 N08 SING N N 19 J4D C14 C13 SING Y N 20 J4D C14 F21 SING N N 21 J4D N08 C04 SING N N 22 J4D C13 F22 SING N N 23 J4D C04 C05 DOUB Y N 24 J4D C01 C06 DOUB Y N 25 J4D C05 C06 SING Y N 26 J4D C06 S26 SING N N 27 J4D N29 S26 SING N N 28 J4D S26 O27 DOUB N N 29 J4D S26 O28 DOUB N N 30 J4D C01 H1 SING N N 31 J4D C05 H2 SING N N 32 J4D O07 H3 SING N N 33 J4D N08 H4 SING N N 34 J4D N10 H5 SING N N 35 J4D N29 O1 DOUB N N 36 J4D N29 O2 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J4D SMILES ACDLabs 12.01 "O=S(=O)([N+]([O-])=O)c1cc(c(O)c(NC(=O)Nc2c(F)c(F)c(F)c(F)c2F)c1)[N+]([O-])=O" J4D InChI InChI 1.06 "InChI=1S/C13H5F5N4O8S/c14-6-7(15)9(17)11(10(18)8(6)16)20-13(24)19-4-1-3(31(29,30)22(27)28)2-5(12(4)23)21(25)26/h1-2,23H,(H2,19,20,24)" J4D InChIKey InChI 1.06 MOCQKRDJRULJNL-UHFFFAOYSA-N J4D SMILES_CANONICAL CACTVS 3.385 "Oc1c(NC(=O)Nc2c(F)c(F)c(F)c(F)c2F)cc(cc1[N+]([O-])=O)[S](=O)(=O)[N+]([O-])=O" J4D SMILES CACTVS 3.385 "Oc1c(NC(=O)Nc2c(F)c(F)c(F)c(F)c2F)cc(cc1[N+]([O-])=O)[S](=O)(=O)[N+]([O-])=O" J4D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c(c1NC(=O)Nc2c(c(c(c(c2F)F)F)F)F)O)[N+](=O)[O-])S(=O)(=O)[N+](=O)[O-]" J4D SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(c(c1NC(=O)Nc2c(c(c(c(c2F)F)F)F)F)O)[N+](=O)[O-])S(=O)(=O)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J4D "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-hydroxy-3-nitro-5-(nitrosulfonyl)phenyl]-N'-(pentafluorophenyl)urea" J4D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-(3-nitro-5-nitrosulfonyl-2-oxidanyl-phenyl)-3-[2,3,4,5,6-pentakis(fluoranyl)phenyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J4D "Create component" 2018-08-09 RCSB J4D "Initial release" 2018-11-28 RCSB J4D "Other modification" 2024-04-25 RCSB #