data_J9E # _chem_comp.id J9E _chem_comp.name "4,6-difluoro-N-(spiro[5.5]undecan-3-yl)-1H-indole-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 F2 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-12-05 _chem_comp.pdbx_modified_date 2018-12-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J9E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6AJJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J9E C02 C1 C 0 1 N N N 8.003 5.120 17.278 -0.390 -0.991 -0.319 C02 J9E 1 J9E C04 C2 C 0 1 N N N 8.078 6.432 19.309 1.954 -0.493 -0.758 C04 J9E 2 J9E C05 C3 C 0 1 N N N 7.673 7.830 19.695 2.690 0.484 -1.677 C05 J9E 3 J9E C06 C4 C 0 1 N N N 8.311 8.100 21.027 4.152 0.054 -1.812 C06 J9E 4 J9E C07 C5 C 0 1 N N N 7.494 7.345 22.026 4.814 0.054 -0.433 C07 J9E 5 J9E C08 C6 C 0 1 N N N 6.233 8.118 22.287 4.749 1.461 0.164 C08 J9E 6 J9E C09 C7 C 0 1 N N N 5.700 7.699 23.642 5.411 1.461 1.544 C09 J9E 7 J9E C10 C8 C 0 1 N N N 6.755 7.909 24.712 6.873 1.030 1.408 C10 J9E 8 J9E C11 C9 C 0 1 N N N 8.062 7.224 24.370 6.937 -0.377 0.812 C11 J9E 9 J9E C12 C10 C 0 1 N N N 8.559 7.698 23.027 6.276 -0.377 -0.568 C12 J9E 10 J9E C13 C11 C 0 1 N N N 7.292 5.887 21.679 4.077 -0.924 0.486 C13 J9E 11 J9E C14 C12 C 0 1 N N N 7.970 5.408 20.411 2.615 -0.493 0.621 C14 J9E 12 J9E C15 C13 C 0 1 Y N N 7.337 4.641 16.006 -1.793 -0.577 -0.183 C15 J9E 13 J9E C16 C14 C 0 1 Y N N 6.268 5.216 15.370 -2.831 -1.397 0.130 C16 J9E 14 J9E C17 C15 C 0 1 Y N N 5.999 4.457 14.231 -4.007 -0.612 0.162 C17 J9E 15 J9E C18 C16 C 0 1 Y N N 5.044 4.520 13.205 -5.355 -0.907 0.423 C18 J9E 16 J9E C20 C17 C 0 1 Y N N 5.041 3.599 12.202 -6.289 0.090 0.378 C20 J9E 17 J9E C21 C18 C 0 1 Y N N 5.991 2.610 12.218 -5.917 1.395 0.075 C21 J9E 18 J9E C23 C19 C 0 1 Y N N 6.936 2.524 13.210 -4.598 1.707 -0.186 C23 J9E 19 J9E C24 C20 C 0 1 Y N N 6.916 3.481 14.230 -3.629 0.710 -0.145 C24 J9E 20 J9E F19 F1 F 0 1 N N N 4.108 5.473 13.151 -5.727 -2.171 0.717 F19 J9E 21 J9E F22 F2 F 0 1 N N N 5.980 1.702 11.227 -6.855 2.366 0.034 F22 J9E 22 J9E N03 N1 N 0 1 N N N 7.314 6.024 18.160 0.554 -0.081 -0.628 N03 J9E 23 J9E N25 N2 N 0 1 Y N N 7.721 3.608 15.305 -2.269 0.711 -0.347 N25 J9E 24 J9E O01 O1 O 0 1 N N N 9.082 4.758 17.536 -0.080 -2.155 -0.147 O01 J9E 25 J9E H1 H1 H 0 1 N N N 9.136 6.474 19.012 2.000 -1.496 -1.183 H1 J9E 26 J9E H2 H2 H 0 1 N N N 8.033 8.551 18.947 2.219 0.485 -2.659 H2 J9E 27 J9E H3 H3 H 0 1 N N N 6.578 7.901 19.775 2.645 1.487 -1.252 H3 J9E 28 J9E H4 H4 H 0 1 N N N 9.351 7.743 21.034 4.198 -0.948 -2.237 H4 J9E 29 J9E H5 H5 H 0 1 N N N 8.292 9.177 21.251 4.677 0.751 -2.466 H5 J9E 30 J9E H6 H6 H 0 1 N N N 6.450 9.196 22.288 5.274 2.158 -0.490 H6 J9E 31 J9E H7 H7 H 0 1 N N N 5.490 7.894 21.508 3.708 1.768 0.261 H7 J9E 32 J9E H8 H8 H 0 1 N N N 4.812 8.302 23.885 5.365 2.463 1.969 H8 J9E 33 J9E H9 H9 H 0 1 N N N 5.423 6.635 23.610 4.886 0.764 2.198 H9 J9E 34 J9E H10 H10 H 0 1 N N N 6.939 8.988 24.821 7.398 1.727 0.754 H10 J9E 35 J9E H11 H11 H 0 1 N N N 6.381 7.503 25.663 7.344 1.030 2.391 H11 J9E 36 J9E H12 H12 H 0 1 N N N 7.905 6.136 24.336 7.979 -0.683 0.715 H12 J9E 37 J9E H13 H13 H 0 1 N N N 8.810 7.463 25.140 6.413 -1.073 1.466 H13 J9E 38 J9E H14 H14 H 0 1 N N N 9.502 7.193 22.772 6.321 -1.379 -0.993 H14 J9E 39 J9E H15 H15 H 0 1 N N N 8.718 8.786 23.044 6.800 0.320 -1.222 H15 J9E 40 J9E H16 H16 H 0 1 N N N 6.211 5.713 21.570 4.123 -1.926 0.061 H16 J9E 41 J9E H17 H17 H 0 1 N N N 7.677 5.285 22.515 4.549 -0.924 1.469 H17 J9E 42 J9E H18 H18 H 0 1 N N N 7.399 4.551 20.024 2.570 0.509 1.046 H18 J9E 43 J9E H19 H19 H 0 1 N N N 8.988 5.082 20.672 2.091 -1.190 1.276 H19 J9E 44 J9E H20 H20 H 0 1 N N N 5.732 6.096 15.692 -2.768 -2.459 0.320 H20 J9E 45 J9E H21 H21 H 0 1 N N N 4.307 3.646 11.411 -7.325 -0.139 0.579 H21 J9E 46 J9E H22 H22 H 0 1 N N N 7.676 1.737 13.203 -4.319 2.724 -0.421 H22 J9E 47 J9E H23 H23 H 0 1 N N N 6.382 6.342 17.989 0.307 0.847 -0.766 H23 J9E 48 J9E H24 H24 H 0 1 N N N 8.489 3.008 15.529 -1.732 1.488 -0.569 H24 J9E 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J9E F22 C21 SING N N 1 J9E C20 C21 SING Y N 2 J9E C20 C18 DOUB Y N 3 J9E C21 C23 DOUB Y N 4 J9E F19 C18 SING N N 5 J9E C18 C17 SING Y N 6 J9E C23 C24 SING Y N 7 J9E C24 C17 DOUB Y N 8 J9E C24 N25 SING Y N 9 J9E C17 C16 SING Y N 10 J9E N25 C15 SING Y N 11 J9E C16 C15 DOUB Y N 12 J9E C15 C02 SING N N 13 J9E C02 O01 DOUB N N 14 J9E C02 N03 SING N N 15 J9E N03 C04 SING N N 16 J9E C04 C05 SING N N 17 J9E C04 C14 SING N N 18 J9E C05 C06 SING N N 19 J9E C14 C13 SING N N 20 J9E C06 C07 SING N N 21 J9E C13 C07 SING N N 22 J9E C07 C08 SING N N 23 J9E C07 C12 SING N N 24 J9E C08 C09 SING N N 25 J9E C12 C11 SING N N 26 J9E C09 C10 SING N N 27 J9E C11 C10 SING N N 28 J9E C04 H1 SING N N 29 J9E C05 H2 SING N N 30 J9E C05 H3 SING N N 31 J9E C06 H4 SING N N 32 J9E C06 H5 SING N N 33 J9E C08 H6 SING N N 34 J9E C08 H7 SING N N 35 J9E C09 H8 SING N N 36 J9E C09 H9 SING N N 37 J9E C10 H10 SING N N 38 J9E C10 H11 SING N N 39 J9E C11 H12 SING N N 40 J9E C11 H13 SING N N 41 J9E C12 H14 SING N N 42 J9E C12 H15 SING N N 43 J9E C13 H16 SING N N 44 J9E C13 H17 SING N N 45 J9E C14 H18 SING N N 46 J9E C14 H19 SING N N 47 J9E C16 H20 SING N N 48 J9E C20 H21 SING N N 49 J9E C23 H22 SING N N 50 J9E N03 H23 SING N N 51 J9E N25 H24 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J9E SMILES ACDLabs 12.01 "C(=O)(NC2CCC1(CCCCC1)CC2)c4cc3c(cc(cc3n4)F)F" J9E InChI InChI 1.03 "InChI=1S/C20H24F2N2O/c21-13-10-16(22)15-12-18(24-17(15)11-13)19(25)23-14-4-8-20(9-5-14)6-2-1-3-7-20/h10-12,14,24H,1-9H2,(H,23,25)" J9E InChIKey InChI 1.03 FQMYGGFYZZTJBK-UHFFFAOYSA-N J9E SMILES_CANONICAL CACTVS 3.385 "Fc1cc(F)c2cc([nH]c2c1)C(=O)N[CH]3CC[C]4(CC[CH2]CC4)CC3" J9E SMILES CACTVS 3.385 "Fc1cc(F)c2cc([nH]c2c1)C(=O)N[CH]3CC[C]4(CC[CH2]CC4)CC3" J9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1c(cc(c2c1[nH]c(c2)C(=O)NC3CCC4(CCCCC4)CC3)F)F" J9E SMILES "OpenEye OEToolkits" 2.0.6 "c1c(cc(c2c1[nH]c(c2)C(=O)NC3CCC4(CCCCC4)CC3)F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J9E "SYSTEMATIC NAME" ACDLabs 12.01 "4,6-difluoro-N-(spiro[5.5]undecan-3-yl)-1H-indole-2-carboxamide" J9E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4,6-bis(fluoranyl)-~{N}-spiro[5.5]undecan-3-yl-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J9E "Create component" 2018-12-05 PDBJ J9E "Initial release" 2018-12-26 RCSB #