data_JA2 # _chem_comp.id JA2 _chem_comp.name "5-(1H-benzimidazol-2-yl)pentan-1-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-02 _chem_comp.pdbx_modified_date 2014-10-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 203.283 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JA2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CWA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JA2 N1 N1 N 0 1 Y N N 15.361 -21.594 5.735 -1.545 -1.422 -0.147 N1 JA2 1 JA2 C2 C2 C 0 1 Y N N 16.586 -21.228 6.171 -2.695 -0.663 -0.233 C2 JA2 2 JA2 C3 C3 C 0 1 Y N N 17.531 -21.640 5.171 -2.375 0.589 0.318 C3 JA2 3 JA2 C4 C4 C 0 1 Y N N 18.915 -21.359 5.350 -3.353 1.586 0.372 C4 JA2 4 JA2 C5 C5 C 0 1 Y N N 19.326 -20.699 6.521 -4.606 1.337 -0.110 C5 JA2 5 JA2 C6 C6 C 0 1 Y N N 18.387 -20.339 7.519 -4.923 0.101 -0.654 C6 JA2 6 JA2 C7 C7 C 0 1 Y N N 17.006 -20.586 7.343 -3.975 -0.899 -0.717 C7 JA2 7 JA2 C8 C8 C 0 1 Y N N 15.499 -22.242 4.533 -0.590 -0.645 0.431 C8 JA2 8 JA2 N9 N9 N 0 1 Y N N 16.820 -22.253 4.159 -1.074 0.531 0.703 N9 JA2 9 JA2 C10 C10 C 0 1 N N N 14.337 -22.745 3.713 0.824 -1.083 0.715 C10 JA2 10 JA2 C11 C11 C 0 1 N N N 14.019 -21.512 2.832 1.802 -0.103 0.064 C11 JA2 11 JA2 C12 C12 C 0 1 N N N 12.966 -21.686 1.733 3.237 -0.548 0.352 C12 JA2 12 JA2 C13 C13 C 0 1 N N N 12.584 -20.350 1.040 4.216 0.432 -0.298 C13 JA2 13 JA2 C14 C14 C 0 1 N N N 11.583 -20.601 -0.094 5.651 -0.013 -0.010 C14 JA2 14 JA2 N15 N15 N 0 1 N N N 11.393 -19.374 -0.795 6.590 0.928 -0.635 N15 JA2 15 JA2 HN1 HN1 H 0 1 N N N 14.498 -21.422 6.209 -1.439 -2.341 -0.441 HN1 JA2 16 JA2 H4 H4 H 0 1 N N N 19.636 -21.648 4.600 -3.117 2.552 0.794 H4 JA2 17 JA2 H5 H5 H 0 1 N N N 20.371 -20.463 6.662 -5.359 2.111 -0.066 H5 JA2 18 JA2 H6 H6 H 0 1 N N N 18.731 -19.869 8.428 -5.919 -0.081 -1.030 H6 JA2 19 JA2 H7 H7 H 0 1 N N N 16.291 -20.286 8.095 -4.227 -1.859 -1.141 H7 JA2 20 JA2 H10 H10 H 0 1 N N N 14.624 -23.612 3.100 0.989 -1.100 1.792 H10 JA2 21 JA2 H10A H10A H 0 0 N N N 13.482 -23.013 4.351 0.984 -2.081 0.307 H10A JA2 22 JA2 H11 H11 H 0 1 N N N 13.670 -20.710 3.499 1.637 -0.086 -1.013 H11 JA2 23 JA2 H11A H11A H 0 0 N N N 14.956 -21.203 2.346 1.642 0.895 0.472 H11A JA2 24 JA2 H12 H12 H 0 1 N N N 13.364 -22.374 0.972 3.403 -0.565 1.430 H12 JA2 25 JA2 H12A H12A H 0 0 N N N 12.060 -22.120 2.181 3.397 -1.546 -0.056 H12A JA2 26 JA2 H13 H13 H 0 1 N N N 12.130 -19.675 1.780 4.050 0.449 -1.376 H13 JA2 27 JA2 H13A H13A H 0 0 N N N 13.491 -19.885 0.626 4.056 1.430 0.110 H13A JA2 28 JA2 H14 H14 H 0 1 N N N 11.979 -21.365 -0.779 5.816 -0.030 1.067 H14 JA2 29 JA2 H14A H14A H 0 0 N N N 10.625 -20.945 0.323 5.811 -1.011 -0.418 H14A JA2 30 JA2 HN15 HN15 H 0 0 N N N 10.742 -19.513 -1.541 7.545 0.656 -0.459 HN15 JA2 31 JA2 HN1A HN1A H 0 0 N N N 11.036 -18.683 -0.166 6.414 1.011 -1.625 HN1A JA2 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JA2 N1 C2 SING Y N 1 JA2 N1 C8 SING Y N 2 JA2 C2 C3 DOUB Y N 3 JA2 C2 C7 SING Y N 4 JA2 C3 C4 SING Y N 5 JA2 C3 N9 SING Y N 6 JA2 C4 C5 DOUB Y N 7 JA2 C5 C6 SING Y N 8 JA2 C6 C7 DOUB Y N 9 JA2 C8 N9 DOUB Y N 10 JA2 C8 C10 SING N N 11 JA2 C10 C11 SING N N 12 JA2 C11 C12 SING N N 13 JA2 C12 C13 SING N N 14 JA2 C13 C14 SING N N 15 JA2 C14 N15 SING N N 16 JA2 N1 HN1 SING N N 17 JA2 C4 H4 SING N N 18 JA2 C5 H5 SING N N 19 JA2 C6 H6 SING N N 20 JA2 C7 H7 SING N N 21 JA2 C10 H10 SING N N 22 JA2 C10 H10A SING N N 23 JA2 C11 H11 SING N N 24 JA2 C11 H11A SING N N 25 JA2 C12 H12 SING N N 26 JA2 C12 H12A SING N N 27 JA2 C13 H13 SING N N 28 JA2 C13 H13A SING N N 29 JA2 C14 H14 SING N N 30 JA2 C14 H14A SING N N 31 JA2 N15 HN15 SING N N 32 JA2 N15 HN1A SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JA2 SMILES ACDLabs 12.01 n2c1ccccc1nc2CCCCCN JA2 InChI InChI 1.03 "InChI=1S/C12H17N3/c13-9-5-1-2-8-12-14-10-6-3-4-7-11(10)15-12/h3-4,6-7H,1-2,5,8-9,13H2,(H,14,15)" JA2 InChIKey InChI 1.03 XTJRXHPNZGDOGE-UHFFFAOYSA-N JA2 SMILES_CANONICAL CACTVS 3.385 "NCCCCCc1[nH]c2ccccc2n1" JA2 SMILES CACTVS 3.385 "NCCCCCc1[nH]c2ccccc2n1" JA2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)[nH]c(n2)CCCCCN" JA2 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)[nH]c(n2)CCCCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JA2 "SYSTEMATIC NAME" ACDLabs 12.01 "5-(1H-benzimidazol-2-yl)pentan-1-amine" JA2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-(1H-benzimidazol-2-yl)pentan-1-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JA2 "Create component" 2014-04-02 EBI JA2 "Initial release" 2014-10-08 RCSB #