data_JCR # _chem_comp.id JCR _chem_comp.name "8-(1~{H}-benzimidazol-2-ylmethyl)-3-ethyl-7-(phenylmethyl)purine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H20 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-26 _chem_comp.pdbx_modified_date 2022-09-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.433 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JCR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZIH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JCR C4 C1 C 0 1 Y N N -19.610 10.753 -17.584 1.346 -1.535 -0.356 C4 JCR 1 JCR C5 C2 C 0 1 Y N N -20.248 9.644 -17.157 1.592 -0.534 0.576 C5 JCR 2 JCR C6 C3 C 0 1 N N N -21.556 9.477 -17.422 2.609 -0.722 1.536 C6 JCR 3 JCR C8 C4 C 0 1 Y N N -18.197 9.540 -16.573 -0.039 0.078 -0.757 C8 JCR 4 JCR N1 N1 N 0 1 N N N -22.225 10.464 -18.119 3.319 -1.869 1.527 N1 JCR 5 JCR N3 N2 N 0 1 N N N -20.249 11.721 -18.267 2.106 -2.692 -0.309 N3 JCR 6 JCR CAI C5 C 0 1 Y N N -19.311 6.705 -18.158 0.845 3.656 -0.588 CAI JCR 7 JCR CAE C6 C 0 1 Y N N -19.324 5.620 -19.038 1.618 4.619 -1.208 CAE JCR 8 JCR CAD C7 C 0 1 Y N N -19.569 4.327 -18.576 2.964 4.723 -0.908 CAD JCR 9 JCR CAF C8 C 0 1 Y N N -19.819 4.119 -17.225 3.535 3.865 0.013 CAF JCR 10 JCR CAJ C9 C 0 1 Y N N -19.810 5.203 -16.345 2.761 2.902 0.633 CAJ JCR 11 JCR CAT C10 C 0 1 Y N N -19.549 6.494 -16.798 1.416 2.798 0.333 CAT JCR 12 JCR CAO C11 C 0 1 N N N -19.564 7.548 -15.867 0.571 1.752 1.013 CAO JCR 13 JCR N7 N3 N 0 1 Y N N -19.346 8.884 -16.513 0.697 0.480 0.297 N7 JCR 14 JCR O6 O1 O 0 1 N N N -22.213 8.491 -17.057 2.843 0.141 2.362 O6 JCR 15 JCR C2 C12 C 0 1 N N N -21.546 11.590 -18.544 3.071 -2.830 0.620 C2 JCR 16 JCR O2 O2 O 0 1 N N N -22.134 12.459 -19.175 3.728 -3.852 0.645 O2 JCR 17 JCR CAM C13 C 0 1 N N N -19.526 12.940 -18.716 1.863 -3.766 -1.276 CAM JCR 18 JCR CAA C14 C 0 1 N N N -19.683 14.057 -17.663 2.737 -3.547 -2.512 CAA JCR 19 JCR N9 N4 N 0 1 Y N N -18.337 10.685 -17.214 0.350 -1.112 -1.138 N9 JCR 20 JCR CAN C15 C 0 1 N N N -16.898 9.049 -15.954 -1.142 0.878 -1.401 CAN JCR 21 JCR CAU C16 C 0 1 Y N N -15.806 8.894 -16.996 -2.469 0.463 -0.820 CAU JCR 22 JCR NAP N5 N 0 1 Y N N -14.525 8.767 -16.671 -3.362 1.307 -0.236 NAP JCR 23 JCR CAY C17 C 0 1 Y N N -13.842 8.673 -17.806 -4.443 0.547 0.164 CAY JCR 24 JCR CAK C18 C 0 1 Y N N -12.524 8.540 -18.017 -5.642 0.833 0.803 CAK JCR 25 JCR CAG C19 C 0 1 Y N N -12.022 8.454 -19.311 -6.535 -0.184 1.066 CAG JCR 26 JCR CAH C20 C 0 1 Y N N -12.931 8.509 -20.361 -6.243 -1.489 0.698 CAH JCR 27 JCR CAL C21 C 0 1 Y N N -14.289 8.647 -20.081 -5.068 -1.789 0.069 CAL JCR 28 JCR CAZ C22 C 0 1 Y N N -14.723 8.731 -18.824 -4.147 -0.775 -0.208 CAZ JCR 29 JCR NAS N6 N 0 1 Y N N -15.956 8.864 -18.321 -2.930 -0.754 -0.809 NAS JCR 30 JCR H1 H1 H 0 1 N N N -23.200 10.364 -18.316 4.019 -2.003 2.185 H1 JCR 31 JCR H2 H2 H 0 1 N N N -19.118 7.701 -18.527 -0.207 3.577 -0.819 H2 JCR 32 JCR H3 H3 H 0 1 N N N -19.142 5.785 -20.090 1.172 5.289 -1.928 H3 JCR 33 JCR H4 H4 H 0 1 N N N -19.564 3.494 -19.263 3.569 5.475 -1.393 H4 JCR 34 JCR H5 H5 H 0 1 N N N -20.019 3.123 -16.857 4.586 3.947 0.247 H5 JCR 35 JCR H6 H6 H 0 1 N N N -20.009 5.038 -15.296 3.207 2.232 1.352 H6 JCR 36 JCR H7 H7 H 0 1 N N N -20.539 7.556 -15.358 0.909 1.625 2.042 H7 JCR 37 JCR H8 H8 H 0 1 N N N -18.767 7.378 -15.128 -0.472 2.069 1.010 H8 JCR 38 JCR H9 H9 H 0 1 N N N -18.459 12.706 -18.844 2.110 -4.726 -0.822 H9 JCR 39 JCR H10 H10 H 0 1 N N N -19.944 13.280 -19.675 0.813 -3.762 -1.567 H10 JCR 40 JCR H11 H11 H 0 1 N N N -19.147 14.957 -17.999 2.557 -4.346 -3.231 H11 JCR 41 JCR H12 H12 H 0 1 N N N -20.750 14.293 -17.535 2.490 -2.587 -2.966 H12 JCR 42 JCR H13 H13 H 0 1 N N N -19.265 13.718 -16.704 3.788 -3.551 -2.220 H13 JCR 43 JCR H14 H14 H 0 1 N N N -17.076 8.074 -15.476 -0.978 1.939 -1.213 H14 JCR 44 JCR H15 H15 H 0 1 N N N -16.567 9.774 -15.196 -1.143 0.696 -2.476 H15 JCR 45 JCR H16 H16 H 0 1 N N N -14.146 8.746 -15.746 -3.258 2.264 -0.122 H16 JCR 46 JCR H17 H17 H 0 1 N N N -11.848 8.499 -17.176 -5.874 1.848 1.092 H17 JCR 47 JCR H18 H18 H 0 1 N N N -10.963 8.348 -19.494 -7.468 0.037 1.563 H18 JCR 48 JCR H19 H19 H 0 1 N N N -12.588 8.445 -21.383 -6.951 -2.276 0.911 H19 JCR 49 JCR H20 H20 H 0 1 N N N -14.999 8.686 -20.894 -4.850 -2.809 -0.213 H20 JCR 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JCR CAH CAL DOUB Y N 1 JCR CAH CAG SING Y N 2 JCR CAL CAZ SING Y N 3 JCR CAG CAK DOUB Y N 4 JCR O2 C2 DOUB N N 5 JCR CAE CAD DOUB Y N 6 JCR CAE CAI SING Y N 7 JCR CAZ NAS SING Y N 8 JCR CAZ CAY DOUB Y N 9 JCR CAM N3 SING N N 10 JCR CAM CAA SING N N 11 JCR CAD CAF SING Y N 12 JCR C2 N3 SING N N 13 JCR C2 N1 SING N N 14 JCR NAS CAU DOUB Y N 15 JCR N3 C4 SING N N 16 JCR CAI CAT DOUB Y N 17 JCR N1 C6 SING N N 18 JCR CAK CAY SING Y N 19 JCR CAY NAP SING Y N 20 JCR C4 N9 SING Y N 21 JCR C4 C5 DOUB Y N 22 JCR C6 C5 SING N N 23 JCR C6 O6 DOUB N N 24 JCR CAF CAJ DOUB Y N 25 JCR N9 C8 DOUB Y N 26 JCR C5 N7 SING Y N 27 JCR CAU NAP SING Y N 28 JCR CAU CAN SING N N 29 JCR CAT CAJ SING Y N 30 JCR CAT CAO SING N N 31 JCR C8 N7 SING Y N 32 JCR C8 CAN SING N N 33 JCR N7 CAO SING N N 34 JCR N1 H1 SING N N 35 JCR CAI H2 SING N N 36 JCR CAE H3 SING N N 37 JCR CAD H4 SING N N 38 JCR CAF H5 SING N N 39 JCR CAJ H6 SING N N 40 JCR CAO H7 SING N N 41 JCR CAO H8 SING N N 42 JCR CAM H9 SING N N 43 JCR CAM H10 SING N N 44 JCR CAA H11 SING N N 45 JCR CAA H12 SING N N 46 JCR CAA H13 SING N N 47 JCR CAN H14 SING N N 48 JCR CAN H15 SING N N 49 JCR NAP H16 SING N N 50 JCR CAK H17 SING N N 51 JCR CAG H18 SING N N 52 JCR CAH H19 SING N N 53 JCR CAL H20 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JCR InChI InChI 1.06 "InChI=1S/C22H20N6O2/c1-2-27-20-19(21(29)26-22(27)30)28(13-14-8-4-3-5-9-14)18(25-20)12-17-23-15-10-6-7-11-16(15)24-17/h3-11H,2,12-13H2,1H3,(H,23,24)(H,26,29,30)" JCR InChIKey InChI 1.06 KRRLVHYAVVYHJV-UHFFFAOYSA-N JCR SMILES_CANONICAL CACTVS 3.385 "CCN1C(=O)NC(=O)c2n(Cc3ccccc3)c(Cc4[nH]c5ccccc5n4)nc12" JCR SMILES CACTVS 3.385 "CCN1C(=O)NC(=O)c2n(Cc3ccccc3)c(Cc4[nH]c5ccccc5n4)nc12" JCR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1c2c(n(c(n2)Cc3[nH]c4ccccc4n3)Cc5ccccc5)C(=O)NC1=O" JCR SMILES "OpenEye OEToolkits" 2.0.7 "CCN1c2c(n(c(n2)Cc3[nH]c4ccccc4n3)Cc5ccccc5)C(=O)NC1=O" # _pdbx_chem_comp_identifier.comp_id JCR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-(1~{H}-benzimidazol-2-ylmethyl)-3-ethyl-7-(phenylmethyl)purine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JCR "Create component" 2022-04-26 PDBE JCR "Modify descriptor" 2022-08-22 RCSB JCR "Initial release" 2022-09-07 RCSB #