data_JD5 # _chem_comp.id JD5 _chem_comp.name "[({5-[4-(cyclopropyloxy)phenyl]pyridin-3-yl}amino)methanediyl]bis(phosphonic acid)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 N2 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-03-15 _chem_comp.pdbx_modified_date 2014-12-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.260 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JD5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4JJV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JD5 OAJ OAJ O 0 1 N N N 16.036 32.218 -10.759 2.921 -2.325 -0.622 OAJ JD5 1 JD5 PAI PAI P 0 1 N N N 16.165 33.487 -9.744 3.869 -1.193 -0.734 PAI JD5 2 JD5 OAK OAK O 0 1 N N N 17.584 33.413 -9.121 5.357 -1.704 -0.393 OAK JD5 3 JD5 OAL OAL O 0 1 N N N 16.061 34.809 -10.595 3.832 -0.610 -2.235 OAL JD5 4 JD5 CAH CAH C 0 1 N N N 14.860 33.508 -8.518 3.392 0.118 0.439 CAH JD5 5 JD5 PAM PAM P 0 1 N N N 15.026 35.033 -7.457 4.559 1.512 0.300 PAM JD5 6 JD5 OAO OAO O 0 1 N N N 14.861 36.234 -8.470 4.525 2.047 -1.079 OAO JD5 7 JD5 OAP OAP O 0 1 N N N 16.394 35.146 -6.804 4.137 2.670 1.336 OAP JD5 8 JD5 OAN OAN O 0 1 N N N 13.945 35.026 -6.431 6.047 1.001 0.641 OAN JD5 9 JD5 NAG NAG N 0 1 N N N 15.093 32.415 -7.560 2.037 0.582 0.128 NAG JD5 10 JD5 CAD CAD C 0 1 Y N N 14.874 31.108 -7.920 0.934 -0.206 0.464 CAD JD5 11 JD5 CAE CAE C 0 1 Y N N 15.661 30.132 -7.354 -0.355 0.226 0.173 CAE JD5 12 JD5 CAC CAC C 0 1 Y N N 13.915 30.722 -8.871 1.111 -1.436 1.088 CAC JD5 13 JD5 NAB NAB N 0 1 Y N N 13.757 29.379 -9.219 0.077 -2.188 1.410 NAB JD5 14 JD5 CAA CAA C 0 1 Y N N 14.586 28.428 -8.558 -1.161 -1.814 1.158 CAA JD5 15 JD5 CAF CAF C 0 1 Y N N 15.521 28.766 -7.611 -1.425 -0.599 0.529 CAF JD5 16 JD5 CAQ CAQ C 0 1 Y N N 16.372 27.812 -6.928 -2.821 -0.184 0.249 CAQ JD5 17 JD5 CAV CAV C 0 1 Y N N 17.667 28.193 -6.673 -3.882 -1.012 0.613 CAV JD5 18 JD5 CAU CAU C 0 1 Y N N 18.599 27.367 -6.063 -5.179 -0.623 0.351 CAU JD5 19 JD5 CAR CAR C 0 1 Y N N 16.064 26.514 -6.567 -3.075 1.036 -0.375 CAR JD5 20 JD5 CAS CAS C 0 1 Y N N 17.023 25.639 -5.946 -4.374 1.419 -0.634 CAS JD5 21 JD5 CAT CAT C 0 1 Y N N 18.293 26.077 -5.636 -5.429 0.590 -0.275 CAT JD5 22 JD5 OAW OAW O 0 1 N N N 19.326 25.349 -4.995 -6.708 0.970 -0.532 OAW JD5 23 JD5 CAX CAX C 0 1 N N N 18.927 24.447 -4.018 -7.735 0.013 -0.266 CAX JD5 24 JD5 CAY CAY C 0 1 N N N 18.846 23.191 -4.607 -8.972 0.498 0.492 CAY JD5 25 JD5 CAZ CAZ C 0 1 N N N 19.811 23.373 -3.603 -9.066 0.181 -1.002 CAZ JD5 26 JD5 H1 H1 H 0 1 N N N 18.044 32.658 -9.468 6.032 -1.013 -0.447 H1 JD5 27 JD5 H2 H2 H 0 1 N N N 15.946 34.588 -11.512 4.076 -1.255 -2.913 H2 JD5 28 JD5 H3 H3 H 0 1 N N N 13.874 33.502 -9.005 3.416 -0.277 1.454 H3 JD5 29 JD5 H4 H4 H 0 1 N N N 16.846 35.908 -7.146 4.137 2.389 2.261 H4 JD5 30 JD5 H5 H5 H 0 1 N N N 13.356 35.755 -6.586 6.722 1.692 0.587 H5 JD5 31 JD5 H6 H6 H 0 1 N N N 16.052 32.478 -7.283 1.907 1.437 -0.311 H6 JD5 32 JD5 H7 H7 H 0 1 N N N 16.436 30.441 -6.668 -0.525 1.174 -0.315 H7 JD5 33 JD5 H8 H8 H 0 1 N N N 13.293 31.472 -9.338 2.110 -1.780 1.313 H8 JD5 34 JD5 H9 H9 H 0 1 N N N 14.473 27.385 -8.815 -1.980 -2.460 1.437 H9 JD5 35 JD5 H10 H10 H 0 1 N N N 17.975 29.187 -6.962 -3.688 -1.956 1.100 H10 JD5 36 JD5 H11 H11 H 0 1 N N N 19.602 27.739 -5.913 -6.002 -1.264 0.633 H11 JD5 37 JD5 H12 H12 H 0 1 N N N 15.068 26.143 -6.758 -2.256 1.681 -0.655 H12 JD5 38 JD5 H13 H13 H 0 1 N N N 16.743 24.621 -5.719 -4.572 2.365 -1.117 H13 JD5 39 JD5 H14 H14 H 0 1 N N N 18.138 24.749 -3.314 -7.392 -1.003 -0.072 H14 JD5 40 JD5 H15 H15 H 0 1 N N N 17.971 22.554 -4.410 -9.444 -0.200 1.185 H15 JD5 41 JD5 H16 H16 H 0 1 N N N 19.167 23.059 -5.651 -9.003 1.546 0.788 H16 JD5 42 JD5 H17 H17 H 0 1 N N N 19.684 22.899 -2.619 -9.158 1.022 -1.689 H17 JD5 43 JD5 H18 H18 H 0 1 N N N 20.880 23.404 -3.860 -9.598 -0.725 -1.292 H18 JD5 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JD5 OAJ PAI DOUB N N 1 JD5 OAL PAI SING N N 2 JD5 PAI OAK SING N N 3 JD5 PAI CAH SING N N 4 JD5 NAB CAC DOUB Y N 5 JD5 NAB CAA SING Y N 6 JD5 CAC CAD SING Y N 7 JD5 CAA CAF DOUB Y N 8 JD5 CAH NAG SING N N 9 JD5 CAH PAM SING N N 10 JD5 OAO PAM DOUB N N 11 JD5 CAD NAG SING N N 12 JD5 CAD CAE DOUB Y N 13 JD5 CAF CAE SING Y N 14 JD5 CAF CAQ SING N N 15 JD5 PAM OAP SING N N 16 JD5 PAM OAN SING N N 17 JD5 CAQ CAV DOUB Y N 18 JD5 CAQ CAR SING Y N 19 JD5 CAV CAU SING Y N 20 JD5 CAR CAS DOUB Y N 21 JD5 CAU CAT DOUB Y N 22 JD5 CAS CAT SING Y N 23 JD5 CAT OAW SING N N 24 JD5 OAW CAX SING N N 25 JD5 CAY CAX SING N N 26 JD5 CAY CAZ SING N N 27 JD5 CAX CAZ SING N N 28 JD5 OAK H1 SING N N 29 JD5 OAL H2 SING N N 30 JD5 CAH H3 SING N N 31 JD5 OAP H4 SING N N 32 JD5 OAN H5 SING N N 33 JD5 NAG H6 SING N N 34 JD5 CAE H7 SING N N 35 JD5 CAC H8 SING N N 36 JD5 CAA H9 SING N N 37 JD5 CAV H10 SING N N 38 JD5 CAU H11 SING N N 39 JD5 CAR H12 SING N N 40 JD5 CAS H13 SING N N 41 JD5 CAX H14 SING N N 42 JD5 CAY H15 SING N N 43 JD5 CAY H16 SING N N 44 JD5 CAZ H17 SING N N 45 JD5 CAZ H18 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JD5 SMILES ACDLabs 12.01 "O=P(O)(O)C(Nc1cc(cnc1)c3ccc(OC2CC2)cc3)P(=O)(O)O" JD5 InChI InChI 1.03 "InChI=1S/C15H18N2O7P2/c18-25(19,20)15(26(21,22)23)17-12-7-11(8-16-9-12)10-1-3-13(4-2-10)24-14-5-6-14/h1-4,7-9,14-15,17H,5-6H2,(H2,18,19,20)(H2,21,22,23)" JD5 InChIKey InChI 1.03 QCLQOQRSHDMFKS-UHFFFAOYSA-N JD5 SMILES_CANONICAL CACTVS 3.370 "O[P](O)(=O)C(Nc1cncc(c1)c2ccc(OC3CC3)cc2)[P](O)(O)=O" JD5 SMILES CACTVS 3.370 "O[P](O)(=O)C(Nc1cncc(c1)c2ccc(OC3CC3)cc2)[P](O)(O)=O" JD5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1c2cc(cnc2)NC(P(=O)(O)O)P(=O)(O)O)OC3CC3" JD5 SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1c2cc(cnc2)NC(P(=O)(O)O)P(=O)(O)O)OC3CC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JD5 "SYSTEMATIC NAME" ACDLabs 12.01 "[({5-[4-(cyclopropyloxy)phenyl]pyridin-3-yl}amino)methanediyl]bis(phosphonic acid)" JD5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[[5-(4-cyclopropyloxyphenyl)pyridin-3-yl]amino]-phosphono-methyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JD5 "Create component" 2013-03-15 RCSB JD5 "Initial release" 2014-12-31 RCSB #