data_JG0 # _chem_comp.id JG0 _chem_comp.name "1-[(8R,15S,18S)-15-(4-azanylbutyl)-18-(2-carbamimidamidoethyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H48 N12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-27 _chem_comp.pdbx_modified_date 2023-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 644.769 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JG0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZW5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JG0 N1 N1 N 0 1 N N N 8.177 -11.077 4.370 6.215 -5.270 1.139 N1 JG0 1 JG0 C7 C1 C 0 1 N N N 1.637 -14.879 3.963 -2.761 -2.347 0.696 C7 JG0 2 JG0 C8 C2 C 0 1 N N S 0.966 -13.821 3.085 -3.948 -1.429 0.813 C8 JG0 3 JG0 N2 N2 N 0 1 N N N 9.258 -10.848 6.464 5.119 -3.410 1.987 N2 JG0 4 JG0 C9 C3 C 0 1 N N N 0.398 -14.442 1.800 -5.137 -2.035 0.065 C9 JG0 5 JG0 O1 O1 O 0 1 N N N 9.491 -16.432 2.181 5.277 0.965 0.946 O1 JG0 6 JG0 C1 C4 C 0 1 N N R 6.495 -13.135 5.494 3.146 -3.631 0.019 C1 JG0 7 JG0 C5 C5 C 0 1 N N N 3.286 -14.891 6.845 -0.420 -3.597 -0.377 C5 JG0 8 JG0 C6 C6 C 0 1 N N N 2.096 -15.616 6.248 -1.708 -4.373 -0.099 C6 JG0 9 JG0 N3 N3 N 0 1 N N N 1.414 -14.777 5.267 -2.852 -3.441 -0.110 N3 JG0 10 JG0 C4 C7 C 0 1 N N N 4.325 -14.470 5.818 0.761 -4.326 0.268 C4 JG0 11 JG0 O4 O2 O 0 1 N N N 2.379 -15.734 3.475 -1.738 -2.114 1.305 O4 JG0 12 JG0 C3 C8 C 0 1 N N N 5.468 -13.709 6.477 1.961 -4.302 -0.680 C3 JG0 13 JG0 O3 O3 O 0 1 N N N 0.963 -11.145 4.042 -3.470 0.715 2.301 O3 JG0 14 JG0 C2 C9 C 0 1 N N N 8.332 -11.418 5.753 5.219 -4.432 1.074 C2 JG0 15 JG0 N4 N4 N 0 1 N N N -3.415 -11.286 0.698 -9.946 -1.485 -0.958 N4 JG0 16 JG0 N N5 N 0 1 N N N 7.489 -12.384 6.238 4.267 -4.572 0.092 N JG0 17 JG0 C C10 C 0 1 N N N 7.129 -14.253 4.656 3.563 -2.413 -0.764 C JG0 18 JG0 O O4 O 0 1 N N N 6.597 -14.623 3.610 3.378 -2.358 -1.961 O JG0 19 JG0 C10 C11 C 0 1 N N N -0.237 -13.405 0.872 -6.377 -1.166 0.287 C10 JG0 20 JG0 C11 C12 C 0 1 N N N -1.542 -12.794 1.386 -7.565 -1.772 -0.462 C11 JG0 21 JG0 C12 C13 C 0 1 N N N -2.063 -11.766 0.395 -8.805 -0.903 -0.239 C12 JG0 22 JG0 C13 C14 C 0 1 N N N 1.825 -11.516 3.241 -3.421 0.909 1.105 C13 JG0 23 JG0 C14 C15 C 0 1 N N S 2.897 -10.536 2.771 -3.141 2.287 0.564 C14 JG0 24 JG0 C15 C16 C 0 1 N N N 2.268 -9.181 2.429 -2.519 2.174 -0.829 C15 JG0 25 JG0 C16 C17 C 0 1 N N N 2.068 -8.932 0.950 -1.137 1.528 -0.720 C16 JG0 26 JG0 C17 C18 C 0 1 N N N 1.042 -7.399 -0.592 0.639 0.718 -2.217 C17 JG0 27 JG0 C18 C19 C 0 1 N N N 5.047 -11.226 1.898 -1.348 3.858 0.871 C18 JG0 28 JG0 C19 C20 C 0 1 N N N 5.828 -11.672 0.685 -0.350 4.604 1.717 C19 JG0 29 JG0 C20 C21 C 0 1 Y N N 7.331 -11.538 0.842 0.889 4.879 0.903 C20 JG0 30 JG0 C21 C22 C 0 1 Y N N 8.099 -12.650 1.170 1.977 4.030 0.993 C21 JG0 31 JG0 C22 C23 C 0 1 Y N N 9.481 -12.557 1.302 3.112 4.280 0.246 C22 JG0 32 JG0 C23 C24 C 0 1 N N N 10.283 -13.791 1.660 4.298 3.357 0.349 C23 JG0 33 JG0 C24 C25 C 0 1 N N N 9.412 -15.596 3.077 4.652 1.010 -0.093 C24 JG0 34 JG0 C25 C26 C 0 1 N N N 8.836 -15.950 4.438 4.517 -0.216 -0.957 C25 JG0 35 JG0 C26 C27 C 0 1 Y N N 10.094 -11.325 1.110 3.160 5.378 -0.592 C26 JG0 36 JG0 C27 C28 C 0 1 Y N N 9.334 -10.207 0.799 2.073 6.228 -0.682 C27 JG0 37 JG0 C28 C29 C 0 1 Y N N 7.960 -10.315 0.660 0.937 5.978 0.065 C28 JG0 38 JG0 N10 N6 N 0 1 N N N 9.838 -14.343 2.930 4.062 2.170 -0.495 N10 JG0 39 JG0 N11 N7 N 0 1 N N N 8.256 -14.805 5.113 4.153 -1.371 -0.106 N11 JG0 40 JG0 N5 N8 N 0 1 N N N 1.926 -12.772 2.780 -3.618 -0.116 0.229 N5 JG0 41 JG0 N6 N9 N 0 1 N N N 1.606 -7.576 0.685 -0.600 1.293 -2.063 N6 JG0 42 JG0 N7 N10 N 0 1 N N N 1.555 -8.329 -1.531 1.116 0.509 -3.412 N7 JG0 43 JG0 N8 N11 N 0 1 N N N 0.145 -6.453 -0.791 1.375 0.363 -1.111 N8 JG0 44 JG0 N9 N12 N 0 1 N N N 3.740 -11.037 1.697 -2.200 2.977 1.475 N9 JG0 45 JG0 O2 O5 O 0 1 N N N 5.570 -11.059 3.002 -1.394 4.036 -0.328 O2 JG0 46 JG0 H1 H1 H 0 1 N N N 8.842 -10.390 4.077 6.887 -5.171 1.832 H1 JG0 47 JG0 H2 H2 H 0 1 N N N 0.129 -13.388 3.652 -4.207 -1.303 1.865 H2 JG0 48 JG0 H3 H3 H 0 1 N N N 9.385 -11.109 7.421 5.790 -3.311 2.681 H3 JG0 49 JG0 H4 H4 H 0 1 N N N 9.843 -10.148 6.054 4.377 -2.787 1.939 H4 JG0 50 JG0 H5 H5 H 0 1 N N N -0.367 -15.182 2.076 -4.911 -2.079 -1.001 H5 JG0 51 JG0 H6 H6 H 0 1 N N N 1.215 -14.943 1.261 -5.327 -3.041 0.438 H6 JG0 52 JG0 H7 H7 H 0 1 N N N 5.968 -12.454 4.810 2.854 -3.334 1.026 H7 JG0 53 JG0 H8 H8 H 0 1 N N N 3.769 -15.558 7.574 -0.261 -3.529 -1.454 H8 JG0 54 JG0 H9 H9 H 0 1 N N N 2.921 -13.990 7.359 -0.502 -2.594 0.042 H9 JG0 55 JG0 H10 H10 H 0 1 N N N 1.392 -15.875 7.052 -1.850 -5.131 -0.870 H10 JG0 56 JG0 H11 H11 H 0 1 N N N 2.445 -16.536 5.755 -1.640 -4.854 0.877 H11 JG0 57 JG0 H12 H12 H 0 1 N N N 0.753 -14.099 5.590 -3.632 -3.600 -0.664 H12 JG0 58 JG0 H13 H13 H 0 1 N N N 3.847 -13.823 5.068 1.026 -3.831 1.202 H13 JG0 59 JG0 H14 H14 H 0 1 N N N 4.727 -15.367 5.325 0.481 -5.360 0.473 H14 JG0 60 JG0 H15 H15 H 0 1 N N N 5.991 -14.396 7.159 1.703 -3.740 -1.579 H15 JG0 61 JG0 H16 H16 H 0 1 N N N 5.040 -12.876 7.053 2.230 -5.322 -0.954 H16 JG0 62 JG0 H17 H17 H 0 1 N N N -3.693 -10.616 0.010 -10.778 -0.928 -0.827 H17 JG0 63 JG0 H18 H18 H 0 1 N N N -4.052 -12.057 0.689 -9.737 -1.596 -1.939 H18 JG0 64 JG0 H20 H20 H 0 1 N N N 7.568 -12.594 7.212 4.337 -5.293 -0.553 H20 JG0 65 JG0 H21 H21 H 0 1 N N N -0.444 -13.891 -0.093 -6.603 -1.121 1.352 H21 JG0 66 JG0 H22 H22 H 0 1 N N N 0.487 -12.590 0.724 -6.187 -0.159 -0.086 H22 JG0 67 JG0 H23 H23 H 0 1 N N N -1.358 -12.306 2.354 -7.339 -1.816 -1.527 H23 JG0 68 JG0 H24 H24 H 0 1 N N N -2.291 -13.589 1.513 -7.755 -2.778 -0.088 H24 JG0 69 JG0 H25 H25 H 0 1 N N N -2.073 -12.223 -0.606 -8.615 0.104 -0.613 H25 JG0 70 JG0 H26 H26 H 0 1 N N N -1.380 -10.904 0.398 -9.031 -0.858 0.826 H26 JG0 71 JG0 H27 H27 H 0 1 N N N 3.551 -10.359 3.637 -4.071 2.852 0.504 H27 JG0 72 JG0 H28 H28 H 0 1 N N N 2.922 -8.390 2.824 -3.158 1.559 -1.463 H28 JG0 73 JG0 H29 H29 H 0 1 N N N 1.286 -9.125 2.922 -2.423 3.168 -1.265 H29 JG0 74 JG0 H30 H30 H 0 1 N N N 1.321 -9.643 0.567 -0.468 2.193 -0.172 H30 JG0 75 JG0 H31 H31 H 0 1 N N N 3.025 -9.090 0.430 -1.219 0.579 -0.191 H31 JG0 76 JG0 H32 H32 H 0 1 N N N 5.513 -11.061 -0.174 -0.785 5.548 2.046 H32 JG0 77 JG0 H33 H33 H 0 1 N N N 5.592 -12.729 0.490 -0.087 4.002 2.587 H33 JG0 78 JG0 H34 H34 H 0 1 N N N 7.614 -13.603 1.325 1.939 3.172 1.647 H34 JG0 79 JG0 H35 H35 H 0 1 N N N 10.153 -14.547 0.872 5.194 3.875 0.007 H35 JG0 80 JG0 H36 H36 H 0 1 N N N 11.347 -13.521 1.737 4.429 3.047 1.386 H36 JG0 81 JG0 H37 H37 H 0 1 N N N 8.054 -16.712 4.302 3.738 -0.053 -1.702 H37 JG0 82 JG0 H38 H38 H 0 1 N N N 9.641 -16.358 5.066 5.465 -0.416 -1.457 H38 JG0 83 JG0 H39 H39 H 0 1 N N N 11.166 -11.237 1.203 4.047 5.572 -1.178 H39 JG0 84 JG0 H40 H40 H 0 1 N N N 9.815 -9.249 0.665 2.112 7.087 -1.335 H40 JG0 85 JG0 H41 H41 H 0 1 N N N 7.375 -9.442 0.409 0.088 6.641 -0.006 H41 JG0 86 JG0 H42 H42 H 0 1 N N N 9.853 -13.750 3.735 3.515 2.213 -1.294 H42 JG0 87 JG0 H43 H43 H 0 1 N N N 8.702 -14.427 5.924 4.321 -1.387 0.850 H43 JG0 88 JG0 H44 H44 H 0 1 N N N 2.704 -12.999 2.195 -3.544 0.012 -0.730 H44 JG0 89 JG0 H45 H45 H 0 1 N N N 1.683 -6.835 1.353 -1.119 1.544 -2.843 H45 JG0 90 JG0 H46 H46 H 0 1 N N N 2.226 -8.945 -1.119 0.598 0.759 -4.192 H46 JG0 91 JG0 H47 H47 H 0 1 N N N -0.134 -5.862 -0.034 1.019 0.518 -0.222 H47 JG0 92 JG0 H48 H48 H 0 1 N N N -0.256 -6.327 -1.698 2.249 -0.043 -1.220 H48 JG0 93 JG0 H49 H49 H 0 1 N N N 3.339 -11.241 0.804 -2.190 2.817 2.431 H49 JG0 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JG0 N7 C17 DOUB N N 1 JG0 N8 C17 SING N N 2 JG0 C17 N6 SING N N 3 JG0 C12 N4 SING N N 4 JG0 C12 C11 SING N N 5 JG0 C28 C27 DOUB Y N 6 JG0 C28 C20 SING Y N 7 JG0 C19 C20 SING N N 8 JG0 C19 C18 SING N N 9 JG0 N6 C16 SING N N 10 JG0 C27 C26 SING Y N 11 JG0 C20 C21 DOUB Y N 12 JG0 C10 C11 SING N N 13 JG0 C10 C9 SING N N 14 JG0 C16 C15 SING N N 15 JG0 C26 C22 DOUB Y N 16 JG0 C21 C22 SING Y N 17 JG0 C22 C23 SING N N 18 JG0 C23 N10 SING N N 19 JG0 N9 C18 SING N N 20 JG0 N9 C14 SING N N 21 JG0 C9 C8 SING N N 22 JG0 C18 O2 DOUB N N 23 JG0 O1 C24 DOUB N N 24 JG0 C15 C14 SING N N 25 JG0 C14 C13 SING N N 26 JG0 N5 C8 SING N N 27 JG0 N5 C13 SING N N 28 JG0 N10 C24 SING N N 29 JG0 C24 C25 SING N N 30 JG0 C8 C7 SING N N 31 JG0 C13 O3 DOUB N N 32 JG0 O4 C7 DOUB N N 33 JG0 O C DOUB N N 34 JG0 C7 N3 SING N N 35 JG0 N1 C2 DOUB N N 36 JG0 C25 N11 SING N N 37 JG0 C N11 SING N N 38 JG0 C C1 SING N N 39 JG0 N3 C6 SING N N 40 JG0 C1 N SING N N 41 JG0 C1 C3 SING N N 42 JG0 C2 N SING N N 43 JG0 C2 N2 SING N N 44 JG0 C4 C3 SING N N 45 JG0 C4 C5 SING N N 46 JG0 C6 C5 SING N N 47 JG0 N1 H1 SING N N 48 JG0 C8 H2 SING N N 49 JG0 N2 H3 SING N N 50 JG0 N2 H4 SING N N 51 JG0 C9 H5 SING N N 52 JG0 C9 H6 SING N N 53 JG0 C1 H7 SING N N 54 JG0 C5 H8 SING N N 55 JG0 C5 H9 SING N N 56 JG0 C6 H10 SING N N 57 JG0 C6 H11 SING N N 58 JG0 N3 H12 SING N N 59 JG0 C4 H13 SING N N 60 JG0 C4 H14 SING N N 61 JG0 C3 H15 SING N N 62 JG0 C3 H16 SING N N 63 JG0 N4 H17 SING N N 64 JG0 N4 H18 SING N N 65 JG0 N H20 SING N N 66 JG0 C10 H21 SING N N 67 JG0 C10 H22 SING N N 68 JG0 C11 H23 SING N N 69 JG0 C11 H24 SING N N 70 JG0 C12 H25 SING N N 71 JG0 C12 H26 SING N N 72 JG0 C14 H27 SING N N 73 JG0 C15 H28 SING N N 74 JG0 C15 H29 SING N N 75 JG0 C16 H30 SING N N 76 JG0 C16 H31 SING N N 77 JG0 C19 H32 SING N N 78 JG0 C19 H33 SING N N 79 JG0 C21 H34 SING N N 80 JG0 C23 H35 SING N N 81 JG0 C23 H36 SING N N 82 JG0 C25 H37 SING N N 83 JG0 C25 H38 SING N N 84 JG0 C26 H39 SING N N 85 JG0 C27 H40 SING N N 86 JG0 C28 H41 SING N N 87 JG0 N10 H42 SING N N 88 JG0 N11 H43 SING N N 89 JG0 N5 H44 SING N N 90 JG0 N6 H45 SING N N 91 JG0 N7 H46 SING N N 92 JG0 N8 H47 SING N N 93 JG0 N8 H48 SING N N 94 JG0 N9 H49 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JG0 InChI InChI 1.06 "InChI=1S/C29H48N12O5/c30-11-3-1-8-20-25(44)35-12-4-2-9-21(41-29(33)34)26(45)38-17-24(43)37-16-19-7-5-6-18(14-19)15-23(42)39-22(27(46)40-20)10-13-36-28(31)32/h5-7,14,20-22H,1-4,8-13,15-17,30H2,(H,35,44)(H,37,43)(H,38,45)(H,39,42)(H,40,46)(H4,31,32,36)(H4,33,34,41)/t20-,21+,22-/m0/s1" JG0 InChIKey InChI 1.06 BLTNNRHGYHMJIZ-BDTNDASRSA-N JG0 SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@@H]1NC(=O)[C@H](CCNC(N)=N)NC(=O)Cc2cccc(CNC(=O)CNC(=O)[C@@H](CCCCNC1=O)NC(N)=N)c2" JG0 SMILES CACTVS 3.385 "NCCCC[CH]1NC(=O)[CH](CCNC(N)=N)NC(=O)Cc2cccc(CNC(=O)CNC(=O)[CH](CCCCNC1=O)NC(N)=N)c2" JG0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCC[C@H]1C(=O)N[C@H](C(=O)NCCCC[C@H](C(=O)NCC(=O)NCc2cccc(c2)CC(=O)N1)N/C(=N/[H])/N)CCCCN" JG0 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)CNC(=O)CNC(=O)C(CCCCNC(=O)C(NC(=O)C(NC(=O)C2)CCNC(=N)N)CCCCN)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id JG0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(8~{R},15~{S},18~{S})-15-(4-azanylbutyl)-18-(2-carbamimidamidoethyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JG0 "Create component" 2022-05-23 PDBE JG0 "Modify descriptor" 2022-08-22 RCSB JG0 "Initial release" 2023-05-31 RCSB #