data_JI1 # _chem_comp.id JI1 _chem_comp.name "3-({(3S,4S)-4-[(6-aminopyridin-2-yl)methyl]pyrrolidin-3-yl}amino)propan-1-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(+-)-3-{cis-4'-[(6"-aminopyridin-2"-yl)methyl]pyrrolidin-3'-ylamino}propan-1-ol ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-10-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 250.340 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JI1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3B3M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JI1 N1 N1 N 0 1 Y N N 12.958 0.523 23.790 -2.892 0.002 -0.406 N1 JI1 1 JI1 C2 C2 C 0 1 Y N N 14.160 0.505 23.182 -4.178 0.309 -0.344 C2 JI1 2 JI1 N2 N2 N 0 1 N N N 15.016 -0.446 23.482 -5.128 -0.616 -0.762 N2 JI1 3 JI1 C3 C3 C 0 1 Y N N 14.497 1.498 22.234 -4.588 1.549 0.136 C3 JI1 4 JI1 C4 C4 C 0 1 Y N N 13.549 2.507 21.950 -3.632 2.459 0.549 C4 JI1 5 JI1 C5 C5 C 0 1 Y N N 12.294 2.498 22.607 -2.293 2.098 0.467 C5 JI1 6 JI1 C6 C6 C 0 1 Y N N 12.030 1.463 23.539 -1.958 0.850 -0.020 C6 JI1 7 JI1 "N1'" "N1'" N 0 1 N N N 9.573 -1.569 24.501 -0.044 -3.175 0.079 "N1'" JI1 8 JI1 "C2'" "C2'" C 0 1 N N N 8.452 -0.777 25.096 1.308 -2.576 -0.058 "C2'" JI1 9 JI1 "C3'" "C3'" C 0 1 N N S 8.243 0.444 24.168 1.210 -1.220 0.673 "C3'" JI1 10 JI1 "C4'" "C4'" C 0 1 N N S 9.614 0.575 23.430 -0.290 -0.859 0.647 "C4'" JI1 11 JI1 "C5'" "C5'" C 0 1 N N N 10.044 -0.895 23.280 -0.971 -2.027 -0.098 "C5'" JI1 12 JI1 C7 C7 C 0 1 N N N 10.674 1.384 24.272 -0.507 0.453 -0.110 C7 JI1 13 JI1 N8 N8 N 0 1 N N N 7.890 1.642 24.981 1.993 -0.200 -0.036 N8 JI1 14 JI1 C9 C9 C 0 1 N N N 6.514 1.828 25.498 3.395 -0.215 0.400 C9 JI1 15 JI1 C10 C10 C 0 1 N N N 6.469 2.870 26.630 4.177 0.859 -0.359 C10 JI1 16 JI1 C11 C11 C 0 1 N N N 5.163 2.711 27.441 5.638 0.843 0.095 C11 JI1 17 JI1 O12 O12 O 0 1 N N N 4.065 2.980 26.566 6.369 1.846 -0.614 O12 JI1 18 JI1 HN21 1HN2 H 0 0 N N N 15.233 -0.971 22.659 -4.847 -1.482 -1.097 HN21 JI1 19 JI1 HN22 2HN2 H 0 0 N N N 15.853 -0.038 23.848 -6.071 -0.395 -0.718 HN22 JI1 20 JI1 H3 H3 H 0 1 N N N 15.456 1.486 21.738 -5.637 1.797 0.185 H3 JI1 21 JI1 H4 H4 H 0 1 N N N 13.781 3.282 21.235 -3.920 3.430 0.925 H4 JI1 22 JI1 H5 H5 H 0 1 N N N 11.557 3.260 22.403 -1.522 2.786 0.782 H5 JI1 23 JI1 "HN1'" "HN1'" H 0 0 N N N 9.251 -2.488 24.274 -0.162 -3.598 0.987 "HN1'" JI1 24 JI1 "H2'1" "1H2'" H 0 0 N N N 8.709 -0.449 26.114 2.055 -3.211 0.419 "H2'1" JI1 25 JI1 "H2'2" "2H2'" H 0 0 N N N 7.535 -1.380 25.174 1.553 -2.426 -1.110 "H2'2" JI1 26 JI1 "H3'" "H3'" H 0 1 N N N 7.416 0.339 23.451 1.559 -1.318 1.701 "H3'" JI1 27 JI1 "H4'" "H4'" H 0 1 N N N 9.537 1.125 22.480 -0.678 -0.778 1.662 "H4'" JI1 28 JI1 "H5'1" "1H5'" H 0 0 N N N 9.590 -1.346 22.385 -1.084 -1.789 -1.156 "H5'1" JI1 29 JI1 "H5'2" "2H5'" H 0 0 N N N 11.133 -0.989 23.158 -1.940 -2.249 0.348 "H5'2" JI1 30 JI1 H71 1H7 H 0 1 N N N 10.297 2.405 24.433 -0.232 0.318 -1.156 H71 JI1 31 JI1 H72 2H7 H 0 1 N N N 10.826 0.866 25.231 0.112 1.234 0.331 H72 JI1 32 JI1 HN8 HN8 H 0 1 N N N 8.483 1.611 25.786 1.923 -0.321 -1.036 HN8 JI1 33 JI1 H91 1H9 H 0 1 N N N 5.870 2.172 24.675 3.445 -0.013 1.470 H91 JI1 34 JI1 H92 2H9 H 0 1 N N N 6.164 0.866 25.901 3.829 -1.194 0.195 H92 JI1 35 JI1 H101 1H10 H 0 0 N N N 7.331 2.721 27.296 4.127 0.656 -1.429 H101 JI1 36 JI1 H102 2H10 H 0 0 N N N 6.504 3.879 26.194 3.744 1.837 -0.154 H102 JI1 37 JI1 H111 1H11 H 0 0 N N N 5.155 3.419 28.283 5.688 1.045 1.165 H111 JI1 38 JI1 H112 2H11 H 0 0 N N N 5.087 1.691 27.846 6.072 -0.136 -0.110 H112 JI1 39 JI1 HO12 HO12 H 0 0 N N N 3.263 3.040 27.072 7.305 1.893 -0.376 HO12 JI1 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JI1 C4 C3 DOUB Y N 1 JI1 C4 C5 SING Y N 2 JI1 C3 C2 SING Y N 3 JI1 C5 C6 DOUB Y N 4 JI1 C2 N2 SING N N 5 JI1 C2 N1 DOUB Y N 6 JI1 "C5'" "C4'" SING N N 7 JI1 "C5'" "N1'" SING N N 8 JI1 "C4'" "C3'" SING N N 9 JI1 "C4'" C7 SING N N 10 JI1 C6 N1 SING Y N 11 JI1 C6 C7 SING N N 12 JI1 "C3'" N8 SING N N 13 JI1 "C3'" "C2'" SING N N 14 JI1 "N1'" "C2'" SING N N 15 JI1 N8 C9 SING N N 16 JI1 C9 C10 SING N N 17 JI1 O12 C11 SING N N 18 JI1 C10 C11 SING N N 19 JI1 N2 HN21 SING N N 20 JI1 N2 HN22 SING N N 21 JI1 C3 H3 SING N N 22 JI1 C4 H4 SING N N 23 JI1 C5 H5 SING N N 24 JI1 "N1'" "HN1'" SING N N 25 JI1 "C2'" "H2'1" SING N N 26 JI1 "C2'" "H2'2" SING N N 27 JI1 "C3'" "H3'" SING N N 28 JI1 "C4'" "H4'" SING N N 29 JI1 "C5'" "H5'1" SING N N 30 JI1 "C5'" "H5'2" SING N N 31 JI1 C7 H71 SING N N 32 JI1 C7 H72 SING N N 33 JI1 N8 HN8 SING N N 34 JI1 C9 H91 SING N N 35 JI1 C9 H92 SING N N 36 JI1 C10 H101 SING N N 37 JI1 C10 H102 SING N N 38 JI1 C11 H111 SING N N 39 JI1 C11 H112 SING N N 40 JI1 O12 HO12 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JI1 SMILES ACDLabs 10.04 "n1c(N)cccc1CC2CNCC2NCCCO" JI1 SMILES_CANONICAL CACTVS 3.341 "Nc1cccc(C[C@H]2CNC[C@H]2NCCCO)n1" JI1 SMILES CACTVS 3.341 "Nc1cccc(C[CH]2CNC[CH]2NCCCO)n1" JI1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(nc(c1)N)C[C@H]2CNC[C@H]2NCCCO" JI1 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(nc(c1)N)CC2CNCC2NCCCO" JI1 InChI InChI 1.03 "InChI=1S/C13H22N4O/c14-13-4-1-3-11(17-13)7-10-8-15-9-12(10)16-5-2-6-18/h1,3-4,10,12,15-16,18H,2,5-9H2,(H2,14,17)/t10-,12+/m0/s1" JI1 InChIKey InChI 1.03 SJAGNBCHAAJNEQ-CMPLNLGQSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JI1 "SYSTEMATIC NAME" ACDLabs 10.04 "3-({(3S,4S)-4-[(6-aminopyridin-2-yl)methyl]pyrrolidin-3-yl}amino)propan-1-ol" JI1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[[(3S,4S)-4-[(6-aminopyridin-2-yl)methyl]pyrrolidin-3-yl]amino]propan-1-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JI1 "Create component" 2007-10-23 RCSB JI1 "Modify aromatic_flag" 2011-06-04 RCSB JI1 "Modify descriptor" 2011-06-04 RCSB JI1 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JI1 _pdbx_chem_comp_synonyms.name ;(+-)-3-{cis-4'-[(6"-aminopyridin-2"-yl)methyl]pyrrolidin-3'-ylamino}propan-1-ol ; _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##