data_JI3 # _chem_comp.id JI3 _chem_comp.name "N-{(3S,4S)-4-[(6-AMINO-4-METHYLPYRIDIN-2-YL)METHYL]PYRROLIDIN-3-YL}-N'-(4-CHLOROBENZYL)ETHANE-1,2-DIAMINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 Cl N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-13 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.923 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JI3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JI3 C21 C21 C 0 1 Y N N 18.869 8.926 55.344 -0.273 7.485 -6.431 C21 JI3 1 JI3 C22 C22 C 0 1 Y N N 19.870 9.942 55.368 -0.668 7.649 -7.759 C22 JI3 2 JI3 C23 C23 C 0 1 Y N N 21.125 9.725 54.716 -2.017 7.821 -8.069 C23 JI3 3 JI3 CL CL CL 0 0 N N N 22.384 10.988 54.768 -2.504 8.024 -9.707 CL JI3 4 JI3 C24 C24 C 0 1 Y N N 21.370 8.485 54.033 -2.971 7.829 -7.051 C24 JI3 5 JI3 C25 C25 C 0 1 Y N N 20.366 7.472 54.013 -2.576 7.665 -5.723 C25 JI3 6 JI3 C26 C26 C 0 1 Y N N 19.120 7.697 54.671 -1.229 7.495 -5.423 C26 JI3 7 JI3 C6 C6 C 0 1 Y N N 11.187 -0.782 59.041 4.453 -0.114 -2.580 C6 JI3 8 JI3 N6 N6 N 0 1 N N N 10.687 -1.905 58.537 5.237 -1.230 -2.197 N6 JI3 9 JI3 C5 C5 C 0 1 Y N N 10.571 -0.121 60.187 4.428 0.213 -3.926 C5 JI3 10 JI3 C4 C4 C 0 1 Y N N 11.179 1.115 60.676 3.664 1.307 -4.316 C4 JI3 11 JI3 C3 C3 C 0 1 Y N N 12.370 1.681 60.047 2.959 2.031 -3.362 C3 JI3 12 JI3 C2 C2 C 0 1 Y N N 12.926 0.969 58.919 3.054 1.618 -2.048 C2 JI3 13 JI3 N1 N1 N 0 1 Y N N 12.328 -0.208 58.468 3.780 0.566 -1.624 N1 JI3 14 JI3 "N1'" "N1'" N 0 1 N N N 16.231 -0.694 57.414 0.915 1.149 1.505 "N1'" JI3 15 JI3 "C2'" "C2'" C 0 1 N N N 16.903 0.555 56.885 0.325 2.493 1.447 "C2'" JI3 16 JI3 "C3'" "C3'" C 0 1 N N R 16.776 1.598 58.072 -0.053 2.725 -0.013 "C3'" JI3 17 JI3 "C4'" "C4'" C 0 1 N N S 15.563 1.087 58.890 0.897 1.805 -0.783 "C4'" JI3 18 JI3 "C5'" "C5'" C 0 1 N N N 15.820 -0.453 58.824 0.911 0.594 0.146 "C5'" JI3 19 JI3 C7 C7 C 0 1 N N N 14.188 1.494 58.188 2.303 2.376 -0.990 C7 JI3 20 JI3 C8 C8 C 0 1 N N N 10.567 1.850 61.881 3.603 1.704 -5.752 C8 JI3 21 JI3 N8 N8 N 0 1 N N N 16.538 2.960 57.506 -0.021 4.124 -0.400 N8 JI3 22 JI3 C9 C9 C 0 1 N N N 17.703 3.742 57.047 -0.380 4.289 -1.803 C9 JI3 23 JI3 C10 C10 C 0 1 N N N 17.249 4.801 56.067 -0.418 5.750 -2.218 C10 JI3 24 JI3 N11 N11 N 0 1 N N N 18.441 5.575 55.655 -0.792 5.909 -3.597 N11 JI3 25 JI3 C12 C12 C 0 1 N N N 18.051 6.604 54.666 -0.804 7.317 -3.994 C12 JI3 26 JI3 H21 H21 H 0 1 N N N 17.922 9.089 55.836 0.781 7.352 -6.199 H21 JI3 27 JI3 H22 H22 H 0 1 N N N 19.681 10.875 55.878 0.087 7.641 -8.541 H22 JI3 28 JI3 H24 H24 H 0 1 N N N 22.314 8.320 53.535 -4.026 7.962 -7.278 H24 JI3 29 JI3 H25 H25 H 0 1 N N N 20.548 6.538 53.502 -3.326 7.672 -4.937 H25 JI3 30 JI3 HN61 1HN6 H 0 0 N N N 10.561 -1.801 57.550 5.968 -1.535 -2.802 HN61 JI3 31 JI3 HN62 2HN6 H 0 0 N N N 11.318 -2.660 58.715 4.980 -1.742 -1.381 HN62 JI3 32 JI3 H5 H5 H 0 1 N N N 9.692 -0.533 60.660 4.984 -0.364 -4.658 H5 JI3 33 JI3 H3 H3 H 0 1 N N N 12.817 2.595 60.410 2.357 2.890 -3.644 H3 JI3 34 JI3 "HN1'" "HN1'" H 0 0 N N N 15.426 -0.905 56.859 0.383 0.547 2.132 "HN1'" JI3 35 JI3 "H2'1" "1H2'" H 0 0 N N N 17.957 0.365 56.632 1.075 3.214 1.792 "H2'1" JI3 36 JI3 "H2'2" "2H2'" H 0 0 N N N 16.439 0.919 55.956 -0.548 2.578 2.103 "H2'2" JI3 37 JI3 "H3'" "H3'" H 0 1 N N N 17.677 1.677 58.699 -1.079 2.361 -0.165 "H3'" JI3 38 JI3 "H4'" "H4'" H 0 1 N N N 15.476 1.492 59.909 0.483 1.545 -1.764 "H4'" JI3 39 JI3 "H5'1" "1H5'" H 0 0 N N N 14.912 -1.020 59.078 0.001 -0.002 -0.001 "H5'1" JI3 40 JI3 "H5'2" "2H5'" H 0 0 N N N 16.583 -0.782 59.545 1.775 -0.057 -0.018 "H5'2" JI3 41 JI3 H71 1H7 H 0 1 N N N 14.133 2.592 58.161 2.849 2.340 -0.043 H71 JI3 42 JI3 H72 2H7 H 0 1 N N N 14.192 1.037 57.187 2.227 3.431 -1.265 H72 JI3 43 JI3 H81 1H8 H 0 1 N N N 10.421 1.140 62.709 4.263 1.067 -6.354 H81 JI3 44 JI3 H82 2H8 H 0 1 N N N 11.245 2.654 62.203 2.582 1.618 -6.147 H82 JI3 45 JI3 H83 3H8 H 0 1 N N N 9.597 2.282 61.593 3.909 2.750 -5.890 H83 JI3 46 JI3 HN8 HN8 H 0 1 N N N 16.100 3.497 58.227 -0.680 4.650 0.176 HN8 JI3 47 JI3 H91 1H9 H 0 1 N N N 18.422 3.072 56.554 0.348 3.725 -2.395 H91 JI3 48 JI3 H92 2H9 H 0 1 N N N 18.182 4.225 57.911 -1.366 3.833 -1.938 H92 JI3 49 JI3 H101 1H10 H 0 0 N N N 16.514 5.466 56.544 -1.156 6.294 -1.620 H101 JI3 50 JI3 H102 2H10 H 0 0 N N N 16.772 4.335 55.192 0.557 6.228 -2.084 H102 JI3 51 JI3 HN11 HN11 H 0 0 N N N 19.112 4.958 55.245 -0.132 5.409 -4.203 HN11 JI3 52 JI3 H121 1H12 H 0 0 N N N 17.075 7.033 54.936 0.202 7.721 -3.837 H121 JI3 53 JI3 H122 2H12 H 0 0 N N N 17.969 6.157 53.664 -1.478 7.851 -3.315 H122 JI3 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JI3 C21 C26 DOUB Y N 1 JI3 C21 C22 SING Y N 2 JI3 C21 H21 SING N N 3 JI3 C22 C23 DOUB Y N 4 JI3 C22 H22 SING N N 5 JI3 C23 C24 SING Y N 6 JI3 C23 CL SING N N 7 JI3 C24 C25 DOUB Y N 8 JI3 C24 H24 SING N N 9 JI3 C25 C26 SING Y N 10 JI3 C25 H25 SING N N 11 JI3 C26 C12 SING N N 12 JI3 C6 N1 SING Y N 13 JI3 C6 N6 SING N N 14 JI3 C6 C5 DOUB Y N 15 JI3 N6 HN61 SING N N 16 JI3 N6 HN62 SING N N 17 JI3 C5 C4 SING Y N 18 JI3 C5 H5 SING N N 19 JI3 C4 C3 DOUB Y N 20 JI3 C4 C8 SING N N 21 JI3 C3 C2 SING Y N 22 JI3 C3 H3 SING N N 23 JI3 C2 C7 SING N N 24 JI3 C2 N1 DOUB Y N 25 JI3 "N1'" "C2'" SING N N 26 JI3 "N1'" "C5'" SING N N 27 JI3 "N1'" "HN1'" SING N N 28 JI3 "C2'" "C3'" SING N N 29 JI3 "C2'" "H2'1" SING N N 30 JI3 "C2'" "H2'2" SING N N 31 JI3 "C3'" N8 SING N N 32 JI3 "C3'" "C4'" SING N N 33 JI3 "C3'" "H3'" SING N N 34 JI3 "C4'" C7 SING N N 35 JI3 "C4'" "C5'" SING N N 36 JI3 "C4'" "H4'" SING N N 37 JI3 "C5'" "H5'1" SING N N 38 JI3 "C5'" "H5'2" SING N N 39 JI3 C7 H71 SING N N 40 JI3 C7 H72 SING N N 41 JI3 C8 H81 SING N N 42 JI3 C8 H82 SING N N 43 JI3 C8 H83 SING N N 44 JI3 N8 C9 SING N N 45 JI3 N8 HN8 SING N N 46 JI3 C9 C10 SING N N 47 JI3 C9 H91 SING N N 48 JI3 C9 H92 SING N N 49 JI3 C10 N11 SING N N 50 JI3 C10 H101 SING N N 51 JI3 C10 H102 SING N N 52 JI3 N11 C12 SING N N 53 JI3 N11 HN11 SING N N 54 JI3 C12 H121 SING N N 55 JI3 C12 H122 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JI3 SMILES ACDLabs 10.04 "Clc1ccc(cc1)CNCCNC2C(CNC2)Cc3nc(N)cc(c3)C" JI3 SMILES_CANONICAL CACTVS 3.341 "Cc1cc(N)nc(C[C@H]2CNC[C@H]2NCCNCc3ccc(Cl)cc3)c1" JI3 SMILES CACTVS 3.341 "Cc1cc(N)nc(C[CH]2CNC[CH]2NCCNCc3ccc(Cl)cc3)c1" JI3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(nc(c1)N)C[C@H]2CNC[C@H]2NCCNCc3ccc(cc3)Cl" JI3 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cc(nc(c1)N)CC2CNCC2NCCNCc3ccc(cc3)Cl" JI3 InChI InChI 1.03 "InChI=1S/C20H28ClN5/c1-14-8-18(26-20(22)9-14)10-16-12-24-13-19(16)25-7-6-23-11-15-2-4-17(21)5-3-15/h2-5,8-9,16,19,23-25H,6-7,10-13H2,1H3,(H2,22,26)/t16-,19+/m0/s1" JI3 InChIKey InChI 1.03 JDRSQGJWTVRNGM-QFBILLFUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JI3 "SYSTEMATIC NAME" ACDLabs 10.04 "N-{(3S,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-(4-chlorobenzyl)ethane-1,2-diamine" JI3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(3S,4S)-4-[(6-amino-4-methyl-pyridin-2-yl)methyl]pyrrolidin-3-yl]-N'-[(4-chlorophenyl)methyl]ethane-1,2-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JI3 "Create component" 2006-12-13 RCSB JI3 "Modify descriptor" 2011-06-04 RCSB #