data_JI5 # _chem_comp.id JI5 _chem_comp.name "N-{(3R,4R)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 F N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N1-{(3'R,4'R)-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-fluorophenethyl)ethane-1,2-diamine tetrahydrochloride ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.495 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JI5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3JWT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JI5 C1 C1 C 0 1 N N N 18.161 2.426 57.130 0.354 -1.713 -0.538 C1 JI5 1 JI5 N1 N1 N 0 1 N N N 17.936 3.433 56.130 -0.923 -1.229 0.002 N1 JI5 2 JI5 C2 C2 C 0 1 N N N 16.916 1.743 57.711 1.468 -0.730 -0.172 C2 JI5 3 JI5 N2 N2 N 0 1 N N N 15.576 2.263 57.474 2.746 -1.214 -0.712 N2 JI5 4 JI5 C3 C3 C 0 1 N N N 14.508 1.438 58.044 3.841 -0.294 -0.380 C3 JI5 5 JI5 C4 C4 C 0 1 N N N 13.083 1.969 57.851 5.152 -0.830 -0.958 C4 JI5 6 JI5 "N1'" "N1'" N 0 1 N N N 17.534 3.718 53.430 -3.577 -3.509 0.881 "N1'" JI5 7 JI5 C11 C11 C 0 1 Y N N 12.138 1.112 58.697 6.275 0.114 -0.616 C11 JI5 8 JI5 N11 N11 N 0 1 Y N N 17.391 8.341 55.236 -5.188 0.752 -1.059 N11 JI5 9 JI5 C12 C12 C 0 1 Y N N 11.651 1.631 59.885 6.990 -0.057 0.554 C12 JI5 10 JI5 C13 C13 C 0 1 Y N N 10.817 0.888 60.694 8.023 0.811 0.867 C13 JI5 11 JI5 F13 F13 F 0 1 N N N 10.374 1.456 61.825 8.722 0.645 2.011 F13 JI5 12 JI5 C14 C14 C 0 1 Y N N 10.438 -0.401 60.323 8.338 1.849 0.007 C14 JI5 13 JI5 C15 C15 C 0 1 Y N N 10.918 -0.943 59.130 7.621 2.018 -1.163 C15 JI5 14 JI5 C16 C16 C 0 1 Y N N 11.769 -0.187 58.319 6.594 1.148 -1.477 C16 JI5 15 JI5 "C2'" "C2'" C 0 1 N N N 18.704 3.012 53.944 -2.119 -3.268 0.729 "C2'" JI5 16 JI5 C21 C21 C 0 1 Y N N 18.591 7.709 55.221 -4.484 0.778 0.056 C21 JI5 17 JI5 "C3'" "C3'" C 0 1 N N R 18.986 3.820 55.206 -2.018 -2.150 -0.331 "C3'" JI5 18 JI5 C31 C31 C 0 1 Y N N 19.706 8.337 54.652 -4.940 1.462 1.166 C31 JI5 19 JI5 "C4'" "C4'" C 0 1 N N R 18.782 5.243 54.720 -3.373 -1.415 -0.269 "C4'" JI5 20 JI5 C41 C41 C 0 1 Y N N 19.575 9.617 54.111 -6.155 2.131 1.101 C41 JI5 21 JI5 "C5'" "C5'" C 0 1 N N N 17.485 5.102 53.894 -4.179 -2.152 0.823 "C5'" JI5 22 JI5 C51 C51 C 0 1 Y N N 18.334 10.257 54.135 -6.870 2.087 -0.082 C51 JI5 23 JI5 C61 C61 C 0 1 Y N N 17.242 9.589 54.699 -6.351 1.378 -1.161 C61 JI5 24 JI5 N61 N61 N 0 1 N N N 16.036 10.208 54.741 -7.060 1.325 -2.355 N61 JI5 25 JI5 C71 C71 C 0 1 N N N 18.717 6.320 55.818 -3.166 0.050 0.121 C71 JI5 26 JI5 C81 C81 C 0 1 N N N 20.770 10.308 53.502 -6.682 2.888 2.293 C81 JI5 27 JI5 H1 H1 H 0 1 N N N 18.775 1.640 56.666 0.580 -2.692 -0.115 H1 JI5 28 JI5 H1A H1A H 0 1 N N N 18.685 2.911 57.967 0.283 -1.794 -1.623 H1A JI5 29 JI5 HN1 HN1 H 0 1 N N N 17.188 3.090 55.562 -0.863 -1.084 0.998 HN1 JI5 30 JI5 H2 H2 H 0 1 N N N 16.916 0.725 57.294 1.242 0.249 -0.595 H2 JI5 31 JI5 H2A H2A H 0 1 N N N 17.051 1.762 58.802 1.540 -0.650 0.912 H2A JI5 32 JI5 HN2 HN2 H 0 1 N N N 15.519 3.171 57.888 2.946 -2.148 -0.385 HN2 JI5 33 JI5 H3 H3 H 0 1 N N N 14.560 0.451 57.561 3.632 0.688 -0.804 H3 JI5 34 JI5 H3A H3A H 0 1 N N N 14.689 1.366 59.127 3.929 -0.210 0.703 H3A JI5 35 JI5 H4 H4 H 0 1 N N N 13.027 3.019 58.174 5.361 -1.812 -0.533 H4 JI5 36 JI5 H4A H4A H 0 1 N N N 12.799 1.905 56.790 5.064 -0.914 -2.041 H4A JI5 37 JI5 "HN1'" "HN1'" H 0 0 N N N 17.573 3.717 52.431 -3.927 -4.092 0.136 "HN1'" JI5 38 JI5 H12 H12 H 0 1 N N N 11.928 2.632 60.182 6.743 -0.867 1.224 H12 JI5 39 JI5 H14 H14 H 0 1 N N N 9.777 -0.976 60.955 9.142 2.527 0.250 H14 JI5 40 JI5 H15 H15 H 0 1 N N N 10.633 -1.942 58.835 7.867 2.828 -1.834 H15 JI5 41 JI5 H16 H16 H 0 1 N N N 12.144 -0.605 57.397 6.038 1.279 -2.394 H16 JI5 42 JI5 "H2'" "H2'" H 0 1 N N N 18.497 1.953 54.158 -1.687 -2.937 1.673 "H2'" JI5 43 JI5 "H2'A" "H2'A" H 0 0 N N N 19.548 3.024 53.238 -1.620 -4.171 0.377 "H2'A" JI5 44 JI5 "H3'" "H3'" H 0 1 N N N 19.967 3.687 55.687 -1.864 -2.579 -1.321 "H3'" JI5 45 JI5 H31 H31 H 0 1 N N N 20.661 7.834 54.632 -4.357 1.477 2.075 H31 JI5 46 JI5 "H4'" "H4'" H 0 1 N N N 19.641 5.622 54.147 -3.886 -1.484 -1.228 "H4'" JI5 47 JI5 "H5'" "H5'" H 0 1 N N N 17.461 5.811 53.053 -5.230 -2.214 0.543 "H5'" JI5 48 JI5 "H5'A" "H5'A" H 0 0 N N N 16.592 5.293 54.507 -4.070 -1.646 1.783 "H5'A" JI5 49 JI5 H51 H51 H 0 1 N N N 18.219 11.250 53.726 -7.819 2.596 -0.167 H51 JI5 50 JI5 HN61 HN61 H 0 0 N N N 15.372 9.615 55.196 -6.702 0.831 -3.110 HN61 JI5 51 JI5 HN6A HN6A H 0 0 N N N 16.119 11.066 55.248 -7.912 1.782 -2.434 HN6A JI5 52 JI5 H71 H71 H 0 1 N N N 19.638 6.273 56.417 -2.461 0.513 -0.570 H71 JI5 53 JI5 H71A H71A H 0 0 N N N 17.842 6.126 56.455 -2.771 0.104 1.135 H71A JI5 54 JI5 H81 H81 H 0 1 N N N 20.830 10.063 52.431 -6.326 3.917 2.256 H81 JI5 55 JI5 H81A H81A H 0 0 N N N 20.665 11.396 53.623 -7.772 2.879 2.275 H81A JI5 56 JI5 H81B H81B H 0 0 N N N 21.686 9.969 54.007 -6.330 2.413 3.209 H81B JI5 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JI5 C1 N1 SING N N 1 JI5 C1 C2 SING N N 2 JI5 N1 "C3'" SING N N 3 JI5 C2 N2 SING N N 4 JI5 N2 C3 SING N N 5 JI5 C3 C4 SING N N 6 JI5 C4 C11 SING N N 7 JI5 "N1'" "C2'" SING N N 8 JI5 "N1'" "C5'" SING N N 9 JI5 C11 C12 DOUB Y N 10 JI5 C11 C16 SING Y N 11 JI5 N11 C21 DOUB Y N 12 JI5 N11 C61 SING Y N 13 JI5 C12 C13 SING Y N 14 JI5 C13 F13 SING N N 15 JI5 C13 C14 DOUB Y N 16 JI5 C14 C15 SING Y N 17 JI5 C15 C16 DOUB Y N 18 JI5 "C2'" "C3'" SING N N 19 JI5 C21 C31 SING Y N 20 JI5 C21 C71 SING N N 21 JI5 "C3'" "C4'" SING N N 22 JI5 C31 C41 DOUB Y N 23 JI5 "C4'" "C5'" SING N N 24 JI5 "C4'" C71 SING N N 25 JI5 C41 C51 SING Y N 26 JI5 C41 C81 SING N N 27 JI5 C51 C61 DOUB Y N 28 JI5 C61 N61 SING N N 29 JI5 C1 H1 SING N N 30 JI5 C1 H1A SING N N 31 JI5 N1 HN1 SING N N 32 JI5 C2 H2 SING N N 33 JI5 C2 H2A SING N N 34 JI5 N2 HN2 SING N N 35 JI5 C3 H3 SING N N 36 JI5 C3 H3A SING N N 37 JI5 C4 H4 SING N N 38 JI5 C4 H4A SING N N 39 JI5 "N1'" "HN1'" SING N N 40 JI5 C12 H12 SING N N 41 JI5 C14 H14 SING N N 42 JI5 C15 H15 SING N N 43 JI5 C16 H16 SING N N 44 JI5 "C2'" "H2'" SING N N 45 JI5 "C2'" "H2'A" SING N N 46 JI5 "C3'" "H3'" SING N N 47 JI5 C31 H31 SING N N 48 JI5 "C4'" "H4'" SING N N 49 JI5 "C5'" "H5'" SING N N 50 JI5 "C5'" "H5'A" SING N N 51 JI5 C51 H51 SING N N 52 JI5 N61 HN61 SING N N 53 JI5 N61 HN6A SING N N 54 JI5 C71 H71 SING N N 55 JI5 C71 H71A SING N N 56 JI5 C81 H81 SING N N 57 JI5 C81 H81A SING N N 58 JI5 C81 H81B SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JI5 SMILES ACDLabs 11.02 "Fc1cccc(c1)CCNCCNC2C(CNC2)Cc3nc(N)cc(c3)C" JI5 SMILES_CANONICAL CACTVS 3.352 "Cc1cc(N)nc(C[C@@H]2CNC[C@@H]2NCCNCCc3cccc(F)c3)c1" JI5 SMILES CACTVS 3.352 "Cc1cc(N)nc(C[CH]2CNC[CH]2NCCNCCc3cccc(F)c3)c1" JI5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)C[C@@H]2CNC[C@@H]2NCCNCCc3cccc(c3)F" JI5 SMILES "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)CC2CNCC2NCCNCCc3cccc(c3)F" JI5 InChI InChI 1.03 "InChI=1S/C21H30FN5/c1-15-9-19(27-21(23)10-15)12-17-13-25-14-20(17)26-8-7-24-6-5-16-3-2-4-18(22)11-16/h2-4,9-11,17,20,24-26H,5-8,12-14H2,1H3,(H2,23,27)/t17-,20+/m1/s1" JI5 InChIKey InChI 1.03 PUOKPLCASUFBAN-XLIONFOSSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JI5 "SYSTEMATIC NAME" ACDLabs 11.02 "N-{(3R,4R)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" JI5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[(3R,4R)-4-[(6-azanyl-4-methyl-pyridin-2-yl)methyl]pyrrolidin-3-yl]-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JI5 "Create component" 2009-09-23 RCSB JI5 "Modify aromatic_flag" 2011-06-04 RCSB JI5 "Modify descriptor" 2011-06-04 RCSB JI5 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JI5 _pdbx_chem_comp_synonyms.name ;N1-{(3'R,4'R)-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-fluorophenethyl)ethane-1,2-diamine tetrahydrochloride ; _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##