data_JLP # _chem_comp.id JLP _chem_comp.name "(2S)-2-azanyl-6-[E-[5-(hydroxymethyl)-2-methyl-3-oxidanyl-pyridin-4-yl]methylideneamino]hexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C14 H21 N3 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-06-03 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 295.334 _chem_comp.one_letter_code K _chem_comp.three_letter_code JLP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ZWB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JLP N N N 0 1 N N N Y Y N 45.811 -6.048 14.259 -5.817 0.402 -1.487 N JLP 1 JLP CA CA C 0 1 N N S Y N N 44.755 -5.209 13.699 -5.448 -0.375 -0.296 CA JLP 2 JLP CB CB C 0 1 N N N N N N 44.551 -5.542 12.220 -4.076 0.080 0.205 CB JLP 3 JLP CG CG C 0 1 N N N N N N 43.882 -4.390 11.471 -3.013 -0.257 -0.843 CG JLP 4 JLP CD CD C 0 1 N N N N N N 44.089 -4.517 9.964 -1.641 0.198 -0.343 CD JLP 5 JLP CE CE C 0 1 N N N N N N 43.472 -3.343 9.204 -0.578 -0.139 -1.391 CE JLP 6 JLP NZ NZ N 0 1 N N N N N N 42.048 -3.627 9.116 0.736 0.296 -0.912 NZ JLP 7 JLP C4A C4A C 0 1 N N N N N N 41.228 -3.048 9.880 1.656 -0.578 -0.664 C4A JLP 8 JLP C4 C4 C 0 1 Y N N N N N 39.771 -3.331 9.801 2.980 -0.139 -0.182 C4 JLP 9 JLP C3 C3 C 0 1 Y N N N N N 39.199 -4.302 8.830 3.260 1.222 0.021 C3 JLP 10 JLP O3 O3 O 0 1 N N N N N N 39.980 -4.989 7.950 2.316 2.166 -0.224 O3 JLP 11 JLP C5 C5 C 0 1 Y N N N N N 38.807 -2.648 10.707 3.990 -1.068 0.093 C5 JLP 12 JLP C5A C5A C 0 1 N N N N N N 39.286 -1.648 11.737 3.746 -2.542 -0.100 C5A JLP 13 JLP OP4 OP4 O 0 1 N N N N N N 40.084 -2.315 12.713 4.926 -3.270 0.247 OP4 JLP 14 JLP C6 C6 C 0 1 Y N N N N N 37.445 -2.944 10.610 5.213 -0.614 0.543 C6 JLP 15 JLP N1 N1 N 0 1 Y N N N N N 36.953 -3.829 9.719 5.439 0.674 0.716 N1 JLP 16 JLP C2 C2 C 0 1 Y N N N N N 37.727 -4.511 8.841 4.520 1.586 0.476 C2 JLP 17 JLP C2A C2A C 0 1 N N N N N N 37.095 -5.482 7.877 4.839 3.042 0.699 C2A JLP 18 JLP C C C 0 1 N N N Y N Y 43.485 -5.429 14.475 -6.475 -0.155 0.785 C JLP 19 JLP O O O 0 1 N N N Y N Y 43.183 -6.552 14.875 -7.197 0.813 0.745 O JLP 20 JLP OXT O1 O 0 1 N Y N Y N Y 42.735 -4.354 14.699 -6.588 -1.035 1.793 O1 JLP 21 JLP H H1 H 0 1 N N N Y Y N 45.938 -5.824 15.225 -6.690 0.076 -1.874 H1 JLP 22 JLP H2 H2 H 0 1 N Y N Y Y N 45.554 -7.010 14.171 -5.860 1.388 -1.277 H2 JLP 23 JLP HA H4 H 0 1 N N N Y N N 45.044 -4.151 13.783 -5.409 -1.434 -0.550 H4 JLP 24 JLP H5 H5 H 0 1 N N N N N N 43.916 -6.437 12.140 -4.089 1.157 0.375 H5 JLP 25 JLP H6 H6 H 0 1 N N N N N N 45.530 -5.745 11.761 -3.841 -0.432 1.138 H6 JLP 26 JLP H7 H7 H 0 1 N N N N N N 44.316 -3.439 11.814 -2.999 -1.334 -1.013 H7 JLP 27 JLP H8 H8 H 0 1 N N N N N N 42.803 -4.400 11.687 -3.248 0.255 -1.776 H8 JLP 28 JLP H9 H9 H 0 1 N N N N N N 43.621 -5.450 9.618 -1.655 1.275 -0.173 H9 JLP 29 JLP H10 H10 H 0 1 N N N N N N 45.168 -4.549 9.755 -1.406 -0.314 0.590 H10 JLP 30 JLP H11 H11 H 0 1 N N N N N N 43.910 -3.267 8.198 -0.565 -1.216 -1.561 H11 JLP 31 JLP H12 H12 H 0 1 N N N N N N 43.641 -2.403 9.750 -0.813 0.373 -2.324 H12 JLP 32 JLP H13 H13 H 0 1 N N N N N N 41.591 -2.334 10.604 1.456 -1.629 -0.810 H13 JLP 33 JLP H14 H14 H 0 1 N N N N N N 40.889 -4.742 8.073 2.325 2.506 -1.129 H14 JLP 34 JLP H15 H15 H 0 1 N N N N N N 39.886 -0.871 11.242 2.922 -2.861 0.538 H15 JLP 35 JLP H16 H16 H 0 1 N N N N N N 38.418 -1.184 12.228 3.494 -2.735 -1.143 H16 JLP 36 JLP H17 H17 H 0 1 N N N N N N 40.385 -1.687 13.360 4.841 -4.228 0.146 H17 JLP 37 JLP H18 H18 H 0 1 N N N N N N 36.758 -2.443 11.276 5.998 -1.325 0.757 H18 JLP 38 JLP H19 H19 H 0 1 N N N N N N 36.007 -5.501 8.036 4.587 3.316 1.723 H19 JLP 39 JLP H20 H20 H 0 1 N N N N N N 37.310 -5.166 6.845 5.902 3.211 0.529 H20 JLP 40 JLP H21 H21 H 0 1 N N N N N N 37.508 -6.488 8.046 4.259 3.651 0.006 H21 JLP 41 JLP HXT H22 H 0 1 N Y N Y N Y 41.966 -4.602 15.198 -7.261 -0.851 2.462 H22 JLP 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JLP C2A C2 SING N N 1 JLP O3 C3 SING N N 2 JLP C3 C2 DOUB Y N 3 JLP C3 C4 SING Y N 4 JLP C2 N1 SING Y N 5 JLP NZ CE SING N N 6 JLP NZ C4A DOUB N N 7 JLP CE CD SING N N 8 JLP N1 C6 DOUB Y N 9 JLP C4 C4A SING N N 10 JLP C4 C5 DOUB Y N 11 JLP CD CG SING N N 12 JLP C6 C5 SING Y N 13 JLP C5 C5A SING N N 14 JLP CG CB SING N N 15 JLP C5A OP4 SING N N 16 JLP CB CA SING N N 17 JLP CA N SING N N 18 JLP CA C SING N N 19 JLP C O DOUB N N 20 JLP C OXT SING N N 21 JLP N H SING N N 22 JLP N H2 SING N N 23 JLP CA HA SING N N 24 JLP CB H5 SING N N 25 JLP CB H6 SING N N 26 JLP CG H7 SING N N 27 JLP CG H8 SING N N 28 JLP CD H9 SING N N 29 JLP CD H10 SING N N 30 JLP CE H11 SING N N 31 JLP CE H12 SING N N 32 JLP C4A H13 SING N N 33 JLP O3 H14 SING N N 34 JLP C5A H15 SING N N 35 JLP C5A H16 SING N N 36 JLP OP4 H17 SING N N 37 JLP C6 H18 SING N N 38 JLP C2A H19 SING N N 39 JLP C2A H20 SING N N 40 JLP C2A H21 SING N N 41 JLP OXT HXT SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JLP InChI InChI 1.03 "InChI=1S/C14H21N3O4/c1-9-13(19)11(10(8-18)6-17-9)7-16-5-3-2-4-12(15)14(20)21/h6-7,12,18-19H,2-5,8,15H2,1H3,(H,20,21)/b16-7+/t12-/m0/s1" JLP InChIKey InChI 1.03 HTUZUUIBHXGHPK-QFULYMJESA-N JLP SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO)c(C=NCCCC[C@H](N)C(O)=O)c1O" JLP SMILES CACTVS 3.385 "Cc1ncc(CO)c(C=NCCCC[CH](N)C(O)=O)c1O" JLP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(c(c(cn1)CO)/C=N/CCCC[C@@H](C(=O)O)N)O" JLP SMILES "OpenEye OEToolkits" 2.0.6 "Cc1c(c(c(cn1)CO)C=NCCCCC(C(=O)O)N)O" # _pdbx_chem_comp_identifier.comp_id JLP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[(~{E})-[5-(hydroxymethyl)-2-methyl-3-oxidanyl-pyridin-4-yl]methylideneamino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JLP "Create component" 2018-06-03 RCSB JLP "Initial release" 2019-05-29 RCSB JLP "Modify backbone" 2023-11-03 PDBE #