data_JM2 # _chem_comp.id JM2 _chem_comp.name "N~5~-[2-(methylsulfanyl)ethanimidoyl]-L-ornithine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H17 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 219.304 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JM2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3JT3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JM2 C C C 0 1 N N N 9.067 -3.107 24.663 4.968 -0.278 0.080 C JM2 1 JM2 N N N 0 1 N N N 9.917 -1.500 26.280 3.767 1.782 -0.390 N JM2 2 JM2 C1 C1 C 0 1 N N N 13.929 0.413 23.560 -2.451 -0.153 -0.051 C1 JM2 3 JM2 C2 C2 C 0 1 N N N 14.199 1.680 22.780 -3.705 0.587 0.337 C2 JM2 4 JM2 S3 S3 S 0 1 N N N 13.899 1.316 21.065 -5.156 -0.367 -0.186 S3 JM2 5 JM2 C4 C4 C 0 1 N N N 13.483 2.875 20.345 -6.543 0.668 0.359 C4 JM2 6 JM2 CA CA C 0 1 N N S 9.295 -1.630 24.957 3.718 0.517 0.356 CA JM2 7 JM2 CB CB C 0 1 N N N 10.088 -0.875 23.861 2.494 -0.288 -0.085 CB JM2 8 JM2 CD CD C 0 1 N N N 11.719 0.983 23.716 -0.004 -0.341 -0.133 CD JM2 9 JM2 NE NE N 0 1 N N N 12.673 0.175 23.972 -1.223 0.379 0.244 NE JM2 10 JM2 CG CG C 0 1 N N N 10.320 0.611 24.190 1.221 0.464 0.308 CG JM2 11 JM2 NH NH N 0 1 N N N 14.937 -0.427 23.799 -2.533 -1.290 -0.661 NH JM2 12 JM2 OA1 OA1 O 0 1 N N N 8.575 -3.451 23.552 5.634 -0.036 -0.899 OA1 JM2 13 JM2 OA2 OA2 O 0 1 N N N 9.347 -3.951 25.553 5.345 -1.250 0.924 OA2 JM2 14 JM2 HN HN H 0 1 N N N 10.071 -0.533 26.483 4.530 2.360 -0.071 HN JM2 15 JM2 HNA HNA H 0 1 N N N 9.312 -1.893 26.973 3.831 1.614 -1.383 HNA JM2 16 JM2 H2 H2 H 0 1 N N N 13.532 2.486 23.120 -3.728 0.721 1.418 H2 JM2 17 JM2 H2A H2A H 0 1 N N N 15.241 2.001 22.924 -3.716 1.562 -0.150 H2A JM2 18 JM2 H4 H4 H 0 1 N N N 13.279 2.741 19.272 -6.483 1.641 -0.129 H4 JM2 19 JM2 H4A H4A H 0 1 N N N 12.588 3.280 20.840 -7.483 0.185 0.092 H4A JM2 20 JM2 H4B H4B H 0 1 N N N 14.322 3.574 20.474 -6.495 0.799 1.439 H4B JM2 21 JM2 HA HA H 0 1 N N N 8.312 -1.137 24.956 3.649 0.727 1.423 HA JM2 22 JM2 HB HB H 0 1 N N N 11.069 -1.360 23.751 2.517 -0.421 -1.166 HB JM2 23 JM2 HBA HBA H 0 1 N N N 9.518 -0.934 22.922 2.506 -1.263 0.402 HBA JM2 24 JM2 HD HD H 0 1 N N N 11.974 1.937 24.200 0.008 -1.316 0.354 HD JM2 25 JM2 HG HG H 0 1 N N N 9.571 1.231 23.676 1.197 0.598 1.390 HG JM2 26 JM2 HGA HGA H 0 1 N N N 10.235 0.774 25.275 1.209 1.439 -0.179 HGA JM2 27 JM2 HNH HNH H 0 1 N N N 15.798 -0.099 23.411 -3.403 -1.667 -0.869 HNH JM2 28 JM2 HOA2 HOA2 H 0 0 N N N 9.131 -4.823 25.243 6.154 -1.733 0.705 HOA2 JM2 29 JM2 H16 H16 H 0 1 N N N 11.668 1.076 22.621 0.020 -0.475 -1.214 H16 JM2 30 JM2 H17 H17 H 0 1 N N N 12.480 -0.657 24.493 -1.161 1.231 0.702 H17 JM2 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JM2 C CA SING N N 1 JM2 C OA2 SING N N 2 JM2 N HN SING N N 3 JM2 N HNA SING N N 4 JM2 C1 NH DOUB N N 5 JM2 C1 NE SING N N 6 JM2 C2 C1 SING N N 7 JM2 C2 H2 SING N N 8 JM2 C2 H2A SING N N 9 JM2 S3 C2 SING N N 10 JM2 C4 S3 SING N N 11 JM2 C4 H4 SING N N 12 JM2 C4 H4A SING N N 13 JM2 C4 H4B SING N N 14 JM2 CA N SING N N 15 JM2 CA HA SING N N 16 JM2 CB CA SING N N 17 JM2 CB CG SING N N 18 JM2 CB HB SING N N 19 JM2 CB HBA SING N N 20 JM2 CD NE SING N N 21 JM2 CD CG SING N N 22 JM2 CD HD SING N N 23 JM2 CG HG SING N N 24 JM2 CG HGA SING N N 25 JM2 NH HNH SING N N 26 JM2 OA1 C DOUB N N 27 JM2 OA2 HOA2 SING N N 28 JM2 CD H16 SING N N 29 JM2 NE H17 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JM2 SMILES ACDLabs 11.02 "O=C(O)C(N)CCCNC(=[N@H])CSC" JM2 SMILES_CANONICAL CACTVS 3.352 "CSCC(=N)NCCC[C@H](N)C(O)=O" JM2 SMILES CACTVS 3.352 "CSCC(=N)NCCC[CH](N)C(O)=O" JM2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(\CSC)/NCCC[C@@H](C(=O)O)N" JM2 SMILES "OpenEye OEToolkits" 1.7.0 "CSCC(=N)NCCCC(C(=O)O)N" JM2 InChI InChI 1.03 "InChI=1S/C8H17N3O2S/c1-14-5-7(10)11-4-2-3-6(9)8(12)13/h6H,2-5,9H2,1H3,(H2,10,11)(H,12,13)/t6-/m0/s1" JM2 InChIKey InChI 1.03 VXQPBNRYLWZLLJ-LURJTMIESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JM2 "SYSTEMATIC NAME" ACDLabs 11.02 "N~5~-[(1E)-2-(methylsulfanyl)ethanimidoyl]-L-ornithine" JM2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-azanyl-5-(2-methylsulfanylethanimidoylamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JM2 "Create component" 2009-09-15 RCSB JM2 "Modify descriptor" 2011-06-04 RCSB #