data_JO9 # _chem_comp.id JO9 _chem_comp.name "(2~{R},4~{S})-2-[(1~{R})-2-(azepan-1-yl)-1-formamido-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H25 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "mecillinam degradation product" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-06 _chem_comp.pdbx_modified_date 2023-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JO9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZO5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JO9 C7 C1 C 0 1 N N N 12.893 27.117 30.277 -1.501 -0.001 0.520 C7 JO9 1 JO9 C8 C2 C 0 1 N N N 13.587 24.994 29.436 -3.716 -0.189 1.432 C8 JO9 2 JO9 C9 C3 C 0 1 N N N 14.580 23.870 29.616 -4.247 -1.584 1.022 C9 JO9 3 JO9 C10 C4 C 0 1 N N N 16.041 24.277 29.510 -5.183 -1.462 -0.106 C10 JO9 4 JO9 C11 C5 C 0 1 N N N 16.425 25.546 30.247 -4.560 -0.905 -1.383 C11 JO9 5 JO9 C12 C6 C 0 1 N N N 15.826 25.753 31.627 -4.575 0.603 -1.329 C12 JO9 6 JO9 O1 O1 O 0 1 N N N 11.769 32.641 33.601 3.464 1.678 0.627 O1 JO9 7 JO9 C1 C7 C 0 1 N N N 11.211 29.117 34.175 3.048 -1.442 -0.177 C1 JO9 8 JO9 C2 C8 C 0 1 N N N 11.793 28.487 35.443 3.535 -2.581 -1.074 C2 JO9 9 JO9 C3 C9 C 0 1 N N S 12.136 30.213 33.603 3.171 -0.089 -0.904 C3 JO9 10 JO9 C4 C10 C 0 1 N N N 11.896 31.607 34.235 4.003 0.842 -0.060 C4 JO9 11 JO9 C5 C11 C 0 1 N N R 11.884 28.998 31.551 0.895 0.199 -0.090 C5 JO9 12 JO9 C6 C12 C 0 1 N N R 13.245 28.378 31.067 -0.543 0.422 -0.564 C6 JO9 13 JO9 O2 O2 O 0 1 N N N 12.001 27.154 29.449 -1.092 -0.609 1.486 O2 JO9 14 JO9 O3 O3 O 0 1 N N N 15.126 30.447 31.743 -0.252 2.425 1.216 O3 JO9 15 JO9 N N1 N 0 1 N N N 12.035 30.307 32.151 1.872 0.540 -1.161 N JO9 16 JO9 C C13 C 0 1 N N N 9.791 29.619 34.410 3.831 -1.421 1.137 C JO9 17 JO9 O O4 O 0 1 N N N 11.838 31.538 35.535 5.341 0.743 -0.071 O JO9 18 JO9 C13 C14 C 0 1 N N N 14.315 25.638 31.741 -3.260 1.124 -0.723 C13 JO9 19 JO9 C14 C15 C 0 1 N N N 14.839 30.205 30.578 -0.572 2.767 0.097 C14 JO9 20 JO9 N1 N2 N 0 1 N N N 13.588 25.988 30.515 -2.810 0.303 0.419 N1 JO9 21 JO9 N2 N3 N 0 1 N N N 13.975 29.272 30.188 -0.743 1.841 -0.867 N2 JO9 22 JO9 S S1 S 0 1 N N N 11.186 27.861 32.825 1.247 -1.597 0.146 S JO9 23 JO9 H12 H1 H 0 1 N N N 13.821 25.511 28.493 -4.553 0.502 1.537 H12 JO9 24 JO9 H11 H2 H 0 1 N N N 12.580 24.556 29.374 -3.189 -0.266 2.383 H11 JO9 25 JO9 H14 H3 H 0 1 N N N 14.420 23.430 30.612 -3.410 -2.217 0.729 H14 JO9 26 JO9 H13 H4 H 0 1 N N N 14.381 23.112 28.844 -4.763 -2.037 1.868 H13 JO9 27 JO9 H16 H5 H 0 1 N N N 16.651 23.455 29.912 -5.593 -2.449 -0.324 H16 JO9 28 JO9 H15 H6 H 0 1 N N N 16.276 24.421 28.445 -6.003 -0.809 0.192 H15 JO9 29 JO9 H18 H7 H 0 1 N N N 17.519 25.547 30.357 -3.532 -1.256 -1.468 H18 JO9 30 JO9 H17 H8 H 0 1 N N N 16.119 26.398 29.622 -5.133 -1.244 -2.246 H17 JO9 31 JO9 H19 H9 H 0 1 N N N 16.269 25.002 32.298 -4.690 0.999 -2.339 H19 JO9 32 JO9 H20 H10 H 0 1 N N N 16.110 26.760 31.966 -5.412 0.934 -0.716 H20 JO9 33 JO9 H4 H11 H 0 1 N N N 11.809 29.234 36.250 3.404 -3.532 -0.558 H4 JO9 34 JO9 H5 H12 H 0 1 N N N 11.170 27.633 35.747 2.958 -2.588 -1.999 H5 JO9 35 JO9 H6 H13 H 0 1 N N N 12.818 28.141 35.243 4.590 -2.436 -1.306 H6 JO9 36 JO9 H7 H14 H 0 1 N N N 13.167 29.923 33.853 3.678 -0.246 -1.856 H7 JO9 37 JO9 H10 H15 H 0 1 N N N 11.167 29.017 30.717 1.098 0.763 0.821 H10 JO9 38 JO9 H H16 H 0 1 N N N 13.852 28.109 31.944 -0.725 -0.170 -1.461 H JO9 39 JO9 H25 H17 H 0 1 N N N 12.864 30.736 31.793 1.518 0.280 -2.070 H25 JO9 40 JO9 H2 H19 H 0 1 N N N 9.795 30.369 35.214 4.889 -1.264 0.927 H2 JO9 41 JO9 H1 H20 H 0 1 N N N 9.406 30.074 33.486 3.462 -0.611 1.767 H1 JO9 42 JO9 H3 H21 H 0 1 N N N 9.147 28.775 34.699 3.700 -2.372 1.653 H3 JO9 43 JO9 H8 H22 H 0 1 N N N 11.685 32.405 35.892 5.832 1.362 0.487 H8 JO9 44 JO9 H21 H23 H 0 1 N N N 13.978 26.309 32.545 -2.487 1.114 -1.492 H21 JO9 45 JO9 H22 H24 H 0 1 N N N 14.068 24.599 32.003 -3.408 2.149 -0.384 H22 JO9 46 JO9 H24 H25 H 0 1 N N N 15.322 30.792 29.811 -0.719 3.813 -0.126 H24 JO9 47 JO9 H23 H26 H 0 1 N N N 13.815 29.179 29.205 -0.999 2.115 -1.762 H23 JO9 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JO9 C8 C9 SING N N 1 JO9 C8 N1 SING N N 2 JO9 O2 C7 DOUB N N 3 JO9 C10 C9 SING N N 4 JO9 C10 C11 SING N N 5 JO9 N2 C14 SING N N 6 JO9 N2 C6 SING N N 7 JO9 C11 C12 SING N N 8 JO9 C7 N1 SING N N 9 JO9 C7 C6 SING N N 10 JO9 N1 C13 SING N N 11 JO9 C14 O3 DOUB N N 12 JO9 C6 C5 SING N N 13 JO9 C5 N SING N N 14 JO9 C5 S SING N N 15 JO9 C12 C13 SING N N 16 JO9 N C3 SING N N 17 JO9 S C1 SING N N 18 JO9 O1 C4 DOUB N N 19 JO9 C3 C1 SING N N 20 JO9 C3 C4 SING N N 21 JO9 C1 C SING N N 22 JO9 C1 C2 SING N N 23 JO9 C4 O SING N N 24 JO9 C8 H12 SING N N 25 JO9 C8 H11 SING N N 26 JO9 C9 H14 SING N N 27 JO9 C9 H13 SING N N 28 JO9 C10 H16 SING N N 29 JO9 C10 H15 SING N N 30 JO9 C11 H18 SING N N 31 JO9 C11 H17 SING N N 32 JO9 C12 H19 SING N N 33 JO9 C12 H20 SING N N 34 JO9 C2 H4 SING N N 35 JO9 C2 H5 SING N N 36 JO9 C2 H6 SING N N 37 JO9 C3 H7 SING N N 38 JO9 C5 H10 SING N N 39 JO9 C6 H SING N N 40 JO9 N H25 SING N N 41 JO9 C H2 SING N N 42 JO9 C H1 SING N N 43 JO9 C H3 SING N N 44 JO9 O H8 SING N N 45 JO9 C13 H21 SING N N 46 JO9 C13 H22 SING N N 47 JO9 C14 H24 SING N N 48 JO9 N2 H23 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JO9 InChI InChI 1.06 "InChI=1S/C15H25N3O4S/c1-15(2)11(14(21)22)17-12(23-15)10(16-9-19)13(20)18-7-5-3-4-6-8-18/h9-12,17H,3-8H2,1-2H3,(H,16,19)(H,21,22)/t10-,11-,12+/m0/s1" JO9 InChIKey InChI 1.06 PMJUGUXXJDBOJL-SDDRHHMPSA-N JO9 SMILES_CANONICAL CACTVS 3.385 "CC1(C)S[C@@H](N[C@H]1C(O)=O)[C@H](NC=O)C(=O)N2CCCCCC2" JO9 SMILES CACTVS 3.385 "CC1(C)S[CH](N[CH]1C(O)=O)[CH](NC=O)C(=O)N2CCCCCC2" JO9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H](N[C@H](S1)[C@@H](C(=O)N2CCCCCC2)NC=O)C(=O)O)C" JO9 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(NC(S1)C(C(=O)N2CCCCCC2)NC=O)C(=O)O)C" # _pdbx_chem_comp_identifier.comp_id JO9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S})-2-[(1~{R})-2-(azepan-1-yl)-1-formamido-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JO9 _pdbx_chem_comp_synonyms.name "mecillinam degradation product" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JO9 "Create component" 2022-05-06 PDBE JO9 "Modify descriptor" 2022-08-22 RCSB JO9 "Initial release" 2023-03-08 RCSB #