data_JS2 # _chem_comp.id JS2 _chem_comp.name ;5-O-[(R)-{[(S)-[4-(8-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-D- ribofuranose ; _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H23 N5 O12 P2" _chem_comp.mon_nstd_parent_comp_id RIB _chem_comp.pdbx_synonyms ;5-O-[(R)-{[(S)-[4-(8-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-D- ribose; 5-O-[(R)-{[(S)-[4-(8-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-D-ribose; 5-O-[(R)-{[(S)-[4-(8-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-ribose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-06-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 515.306 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JS2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4TMF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 JS2 ;5-O-[(R)-{[(S)-[4-(8-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-D- ribose ; PDB ? 2 JS2 ;5-O-[(R)-{[(S)-[4-(8-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-D-ribose ; PDB ? 3 JS2 "5-O-[(R)-{[(S)-[4-(8-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-ribose" PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JS2 C2A C2 C 0 1 N N N 6.451 -4.698 2.928 -7.825 -1.911 2.248 C2A JS2 1 JS2 C4A C4 C 0 1 Y N N 4.772 -3.271 2.024 -7.153 -1.112 0.194 C4A JS2 2 JS2 C6 C6 C 0 1 N N N 4.126 -5.076 3.303 -9.460 -0.914 0.887 C6 JS2 3 JS2 O3 "O3'" O 0 1 N N N 0.023 4.012 -0.621 7.998 -2.312 1.648 O3 JS2 4 JS2 C3 "C3'" C 0 1 N N S 0.713 3.106 0.306 7.926 -1.128 0.852 C3 JS2 5 JS2 C2 "C2'" C 0 1 N N R 0.614 1.689 -0.160 8.879 -1.232 -0.364 C2 JS2 6 JS2 O2 "O2'" O 0 1 N N N -0.398 1.606 -1.143 9.891 -2.215 -0.135 O2 JS2 7 JS2 C1 "C1'" C 0 1 N N S 1.971 1.435 -0.842 7.917 -1.680 -1.493 C1 JS2 8 JS2 O1 "O1'" O 0 1 N Y N 1.743 1.468 -2.199 7.694 -3.091 -1.434 O1 JS2 9 JS2 O4 "O4'" O 0 1 N N N 2.812 2.571 -0.660 6.699 -0.960 -1.204 O4 JS2 10 JS2 C4 "C4'" C 0 1 N N R 2.258 3.356 0.391 6.526 -0.985 0.223 C4 JS2 11 JS2 C5 "C5'" C 0 1 N N N 2.794 2.861 1.730 5.876 0.319 0.691 C5 JS2 12 JS2 O5 "O5'" O 0 1 N N N 4.242 2.984 1.659 4.537 0.387 0.197 O5 JS2 13 JS2 PBG PBG P 0 1 N N N 5.151 4.058 2.529 3.554 1.627 0.497 PBG JS2 14 JS2 OAI OAI O 0 1 N N N 4.906 3.788 4.195 4.140 2.956 -0.197 OAI JS2 15 JS2 OAD OAD O 0 1 N N N 4.891 5.449 2.036 3.456 1.836 1.959 OAD JS2 16 JS2 OAV OAV O 0 1 N N N 6.695 3.543 2.300 2.093 1.309 -0.099 OAV JS2 17 JS2 PBF PBF P 0 1 N N N 7.272 2.631 3.501 0.633 1.955 0.114 PBF JS2 18 JS2 OAH OAH O 0 1 N N N 7.916 3.657 4.454 0.503 3.292 -0.772 OAH JS2 19 JS2 OAC OAC O 0 1 N N N 8.289 1.683 2.974 0.447 2.290 1.544 OAC JS2 20 JS2 OAS OAS O 0 1 N N N 5.912 1.924 4.281 -0.493 0.897 -0.340 OAS JS2 21 JS2 CAM CAM C 0 1 N N N 5.661 0.529 4.053 -1.893 1.132 -0.176 CAM JS2 22 JS2 CAK CAK C 0 1 N N N 4.994 0.357 2.678 -2.678 -0.067 -0.710 CAK JS2 23 JS2 CAL CAL C 0 1 N N N 5.921 -0.427 1.685 -4.176 0.184 -0.534 CAL JS2 24 JS2 CAN CAN C 0 1 N N N 5.134 -1.291 0.652 -4.961 -1.015 -1.068 CAN JS2 25 JS2 N9 N9 N 0 1 Y N N 4.230 -2.290 1.344 -6.397 -0.774 -0.900 N9 JS2 26 JS2 N3 N3 N 0 1 N N N 6.075 -3.586 2.175 -6.888 -1.710 1.364 N3 JS2 27 JS2 N1 N1 N 0 1 N N N 5.496 -5.426 3.476 -9.110 -1.529 2.038 N1 JS2 28 JS2 O6 O6 O 0 1 N N N 3.277 -5.777 3.828 -10.612 -0.566 0.688 O6 JS2 29 JS2 C5A C5 C 0 1 Y N N 3.786 -4.006 2.577 -8.456 -0.693 -0.087 C5A JS2 30 JS2 N7 N7 N 0 1 Y N N 2.597 -3.473 2.244 -8.443 -0.126 -1.319 N7 JS2 31 JS2 C8 C8 C 0 1 Y N N 2.906 -2.408 1.496 -7.227 -0.172 -1.803 C8 JS2 32 JS2 NAA NAA N 0 1 N N N 2.018 -1.579 0.959 -6.843 0.313 -3.038 NAA JS2 33 JS2 H1A H1 H 0 1 N N N 7.492 -4.956 3.059 -7.570 -2.401 3.177 H1A JS2 34 JS2 HO3 H2 H 0 1 N Y N 0.098 4.905 -0.306 8.858 -2.452 2.068 HO3 JS2 35 JS2 H3 H3 H 0 1 N N N 0.283 3.197 1.314 8.165 -0.250 1.453 H3 JS2 36 JS2 H2 H4 H 0 1 N N N 0.457 0.995 0.679 9.324 -0.264 -0.593 H2 JS2 37 JS2 HO2 H5 H 0 1 N Y N -1.245 1.760 -0.740 10.513 -2.317 -0.868 HO2 JS2 38 JS2 H1 H6 H 0 1 N N N 2.427 0.499 -0.488 8.310 -1.393 -2.469 H1 JS2 39 JS2 HO1 H7 H 0 1 N Y N 1.182 0.742 -2.444 7.046 -3.414 -2.076 HO1 JS2 40 JS2 H4 H8 H 0 1 N N N 2.472 4.427 0.263 5.904 -1.834 0.506 H4 JS2 41 JS2 H51 H9 H 0 1 N N N 2.399 3.478 2.550 5.864 0.348 1.780 H51 JS2 42 JS2 H52 H10 H 0 1 N N N 2.508 1.811 1.890 6.447 1.166 0.310 H52 JS2 43 JS2 H11 H11 H 0 1 N N N 4.623 4.595 4.609 4.232 2.891 -1.158 H11 JS2 44 JS2 H12 H12 H 0 1 N N N 8.848 3.485 4.522 0.614 3.147 -1.722 H12 JS2 45 JS2 H13 H13 H 0 1 N N N 4.994 0.142 4.837 -2.116 1.270 0.882 H13 JS2 46 JS2 H14 H14 H 0 1 N N N 6.611 -0.025 4.073 -2.178 2.028 -0.727 H14 JS2 47 JS2 H15 H15 H 0 1 N N N 4.779 1.351 2.258 -2.454 -0.205 -1.768 H15 JS2 48 JS2 H16 H16 H 0 1 N N N 4.053 -0.199 2.804 -2.392 -0.963 -0.159 H16 JS2 49 JS2 H17 H17 H 0 1 N N N 6.574 -1.092 2.269 -4.400 0.322 0.524 H17 JS2 50 JS2 H18 H18 H 0 1 N N N 6.536 0.300 1.134 -4.462 1.080 -1.085 H18 JS2 51 JS2 H19 H19 H 0 1 N N N 5.851 -1.835 0.020 -4.738 -1.153 -2.126 H19 JS2 52 JS2 H20 H20 H 0 1 N N N 4.521 -0.628 0.024 -4.676 -1.911 -0.517 H20 JS2 53 JS2 H22 H22 H 0 1 N N N 1.095 -1.876 1.201 -5.918 0.239 -3.322 H22 JS2 54 JS2 H23 H23 H 0 1 N N N 2.172 -0.654 1.307 -7.497 0.728 -3.622 H23 JS2 55 JS2 H21 H21 H 0 1 N N N 5.737 -6.231 4.018 -9.781 -1.698 2.718 H21 JS2 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JS2 O1 C1 SING N N 1 JS2 O2 C2 SING N N 2 JS2 C1 O4 SING N N 3 JS2 C1 C2 SING N N 4 JS2 O4 C4 SING N N 5 JS2 O3 C3 SING N N 6 JS2 C2 C3 SING N N 7 JS2 C3 C4 SING N N 8 JS2 C4 C5 SING N N 9 JS2 CAN N9 SING N N 10 JS2 CAN CAL SING N N 11 JS2 NAA C8 SING N N 12 JS2 N9 C8 SING Y N 13 JS2 N9 C4A SING Y N 14 JS2 C8 N7 DOUB Y N 15 JS2 O5 C5 SING N N 16 JS2 O5 PBG SING N N 17 JS2 CAL CAK SING N N 18 JS2 C4A N3 SING N N 19 JS2 C4A C5A DOUB Y N 20 JS2 OAD PBG DOUB N N 21 JS2 N3 C2A DOUB N N 22 JS2 N7 C5A SING Y N 23 JS2 OAV PBG SING N N 24 JS2 OAV PBF SING N N 25 JS2 PBG OAI SING N N 26 JS2 C5A C6 SING N N 27 JS2 CAK CAM SING N N 28 JS2 C2A N1 SING N N 29 JS2 OAC PBF DOUB N N 30 JS2 C6 N1 SING N N 31 JS2 C6 O6 DOUB N N 32 JS2 PBF OAS SING N N 33 JS2 PBF OAH SING N N 34 JS2 CAM OAS SING N N 35 JS2 C2A H1A SING N N 36 JS2 O3 HO3 SING N N 37 JS2 C3 H3 SING N N 38 JS2 C2 H2 SING N N 39 JS2 O2 HO2 SING N N 40 JS2 C1 H1 SING N N 41 JS2 O1 HO1 SING N N 42 JS2 C4 H4 SING N N 43 JS2 C5 H51 SING N N 44 JS2 C5 H52 SING N N 45 JS2 OAI H11 SING N N 46 JS2 OAH H12 SING N N 47 JS2 CAM H13 SING N N 48 JS2 CAM H14 SING N N 49 JS2 CAK H15 SING N N 50 JS2 CAK H16 SING N N 51 JS2 CAL H17 SING N N 52 JS2 CAL H18 SING N N 53 JS2 CAN H19 SING N N 54 JS2 CAN H20 SING N N 55 JS2 NAA H22 SING N N 56 JS2 NAA H23 SING N N 57 JS2 N1 H21 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JS2 SMILES ACDLabs 12.01 "O=C3NC=Nc1c3nc(N)n1CCCCOP(=O)(O)OP(=O)(O)OCC2OC(O)C(O)C2O" JS2 InChI InChI 1.03 "InChI=1S/C14H23N5O12P2/c15-14-18-8-11(16-6-17-12(8)22)19(14)3-1-2-4-28-32(24,25)31-33(26,27)29-5-7-9(20)10(21)13(23)30-7/h6-7,9-10,13,20-21,23H,1-5H2,(H2,15,18)(H,24,25)(H,26,27)(H,16,17,22)/t7-,9-,10-,13+/m1/s1" JS2 InChIKey InChI 1.03 PAHYBMURMGWUSG-HMMKDHSLSA-N JS2 SMILES_CANONICAL CACTVS 3.385 "Nc1nc2C(=O)NC=Nc2n1CCCCO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H](O)[C@H](O)[C@@H]3O" JS2 SMILES CACTVS 3.385 "Nc1nc2C(=O)NC=Nc2n1CCCCO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH](O)[CH](O)[CH]3O" JS2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1=Nc2c(nc(n2CCCCOP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@H](O3)O)O)O)N)C(=O)N1" JS2 SMILES "OpenEye OEToolkits" 1.9.2 "C1=Nc2c(nc(n2CCCCOP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)O)O)O)N)C(=O)N1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JS2 "SYSTEMATIC NAME" ACDLabs 12.01 ;5-O-[(R)-{[(S)-[4-(8-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-D- ribofuranose ; JS2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 ;[4-(8-azanyl-6-oxidanylidene-1H-purin-9-yl)butoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5S)-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; # _pdbx_chem_comp_related.comp_id JS2 _pdbx_chem_comp_related.related_comp_id RIB _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 JS2 C1 RIB C1 "Carbohydrate core" 2 JS2 C2 RIB C2 "Carbohydrate core" 3 JS2 C3 RIB C3 "Carbohydrate core" 4 JS2 C4 RIB C4 "Carbohydrate core" 5 JS2 C5 RIB C5 "Carbohydrate core" 6 JS2 O1 RIB O1 "Carbohydrate core" 7 JS2 O2 RIB O2 "Carbohydrate core" 8 JS2 O3 RIB O3 "Carbohydrate core" 9 JS2 O4 RIB O4 "Carbohydrate core" 10 JS2 O5 RIB O5 "Carbohydrate core" 11 JS2 H52 RIB H52 "Carbohydrate core" 12 JS2 HO3 RIB HO3 "Carbohydrate core" 13 JS2 H3 RIB H3 "Carbohydrate core" 14 JS2 H2 RIB H2 "Carbohydrate core" 15 JS2 HO2 RIB HO2 "Carbohydrate core" 16 JS2 H1 RIB H1 "Carbohydrate core" 17 JS2 HO1 RIB HO1 "Carbohydrate core" 18 JS2 H4 RIB H4 "Carbohydrate core" 19 JS2 H51 RIB H51 "Carbohydrate core" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support JS2 "CARBOHYDRATE ISOMER" D PDB ? JS2 "CARBOHYDRATE RING" furanose PDB ? JS2 "CARBOHYDRATE ANOMER" alpha PDB ? JS2 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JS2 "Create component" 2014-06-18 RCSB JS2 "Modify descriptor" 2014-09-05 RCSB JS2 "Initial release" 2015-05-13 RCSB JS2 "Other modification" 2020-07-03 RCSB JS2 "Modify parent residue" 2020-07-17 RCSB JS2 "Modify name" 2020-07-17 RCSB JS2 "Modify synonyms" 2020-07-17 RCSB JS2 "Modify internal type" 2020-07-17 RCSB JS2 "Modify linking type" 2020-07-17 RCSB JS2 "Modify atom id" 2020-07-17 RCSB JS2 "Modify component atom id" 2020-07-17 RCSB JS2 "Modify leaving atom flag" 2020-07-17 RCSB #