data_JXM # _chem_comp.id JXM _chem_comp.name "(8S)-9-[(2R)-2-hydroxy-2-phenylethyl]-2-(morpholin-4-yl)-8-(trifluoromethyl)-6,7,8,9-tetrahydro-4H-pyrimido[1,2-a]pyrimidin-4-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 F3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-08-12 _chem_comp.pdbx_modified_date 2014-11-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JXM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4UWH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JXM C1 C1 C 0 1 Y N N 23.071 -10.110 -20.949 -2.772 -4.986 -0.450 C1 JXM 1 JXM C2 C2 C 0 1 Y N N 21.860 -10.699 -20.536 -3.703 -4.052 -0.037 C2 JXM 2 JXM C3 C3 C 0 1 Y N N 24.021 -10.865 -21.680 -1.427 -4.668 -0.452 C3 JXM 3 JXM C4 C4 C 0 1 Y N N 21.602 -12.054 -20.867 -3.289 -2.799 0.374 C4 JXM 4 JXM C5 C5 C 0 1 Y N N 23.771 -12.223 -22.013 -1.013 -3.414 -0.041 C5 JXM 5 JXM C6 C6 C 0 1 Y N N 22.554 -12.834 -21.610 -1.944 -2.480 0.373 C6 JXM 6 JXM C7 C7 C 0 1 N N N 16.721 -15.940 -22.657 3.067 2.000 -0.277 C7 JXM 7 JXM C8 C8 C 0 1 N N N 17.422 -14.764 -22.523 2.602 0.693 -0.297 C8 JXM 8 JXM C9 C9 C 0 1 N N N 17.430 -17.192 -23.078 2.148 3.033 -0.080 C9 JXM 9 JXM C10 C10 C 0 1 N N N 19.471 -15.811 -23.159 0.427 1.440 0.007 C10 JXM 10 JXM C11 C11 C 0 1 N N N 21.051 -18.165 -23.325 -1.517 3.502 0.100 C11 JXM 11 JXM C12 C12 C 0 1 N N N 19.576 -18.267 -23.708 -0.075 3.813 0.448 C12 JXM 12 JXM C13 C13 C 0 1 N N N 17.698 -12.300 -22.037 3.054 -1.620 -1.078 C13 JXM 13 JXM C14 C14 C 0 1 N N N 15.384 -13.241 -22.381 4.883 -0.245 -0.014 C14 JXM 14 JXM C15 C15 C 0 1 N N N 17.086 -11.285 -21.089 3.476 -2.776 -0.163 C15 JXM 15 JXM C16 C16 C 0 1 N N N 14.883 -12.101 -21.493 5.216 -1.468 0.849 C16 JXM 16 JXM C17 C17 C 0 1 N N S 21.661 -16.854 -23.865 -1.905 2.084 0.487 C17 JXM 17 JXM C18 C18 C 0 1 N N N 21.559 -14.407 -23.301 -1.336 -0.204 -0.400 C18 JXM 18 JXM C19 C19 C 0 1 N N R 22.301 -14.287 -21.967 -1.493 -1.113 0.820 C19 JXM 19 JXM C20 C20 C 0 1 N N N 21.748 -16.846 -25.386 -3.253 1.741 -0.150 C20 JXM 20 JXM N21 N21 N 0 1 N N N 18.787 -14.759 -22.771 1.294 0.458 -0.160 N21 JXM 21 JXM N22 N22 N 0 1 N N N 16.823 -13.526 -22.143 3.484 -0.357 -0.458 N22 JXM 22 JXM N23 N23 N 0 1 N N N 18.817 -17.061 -23.304 0.841 2.731 0.106 N23 JXM 23 JXM N24 N24 N 0 1 N N N 20.852 -15.699 -23.431 -0.905 1.127 0.036 N24 JXM 24 JXM O25 O25 O 0 1 N N N 16.801 -18.232 -23.194 2.520 4.196 -0.075 O25 JXM 25 JXM O26 O26 O 0 1 N N N 15.780 -10.986 -21.574 4.869 -2.657 0.134 O26 JXM 26 JXM O27 O27 O 0 1 N N N 21.573 -14.900 -20.915 -0.239 -1.223 1.497 O27 JXM 27 JXM F28 F28 F 0 1 N N N 22.384 -17.952 -25.803 -3.122 1.735 -1.543 F28 JXM 28 JXM F29 F29 F 0 1 N N N 20.542 -16.833 -26.005 -3.666 0.477 0.285 F29 JXM 29 JXM F30 F30 F 0 1 N N N 22.457 -15.769 -25.818 -4.203 2.697 0.225 F30 JXM 30 JXM H1 H1 H 0 1 N N N 23.276 -9.078 -20.707 -3.095 -5.967 -0.767 H1 JXM 31 JXM H2 H2 H 0 1 N N N 21.137 -10.126 -19.974 -4.754 -4.301 -0.036 H2 JXM 32 JXM H3 H3 H 0 1 N N N 24.947 -10.402 -21.988 -0.699 -5.398 -0.774 H3 JXM 33 JXM H4 H4 H 0 1 N N N 20.673 -12.508 -20.555 -4.017 -2.068 0.696 H4 JXM 34 JXM H5 H5 H 0 1 N N N 24.503 -12.788 -22.570 0.038 -3.165 -0.041 H5 JXM 35 JXM H19 H19 H 0 1 N N N 23.275 -14.786 -22.076 -2.235 -0.689 1.497 H19 JXM 36 JXM H7 H7 H 0 1 N N N 15.660 -15.961 -22.459 4.118 2.214 -0.406 H7 JXM 37 JXM H111 H111 H 0 0 N N N 21.142 -18.182 -22.229 -2.167 4.203 0.623 H111 JXM 38 JXM H112 H112 H 0 0 N N N 21.596 -19.020 -23.752 -1.656 3.626 -0.974 H112 JXM 39 JXM H121 H121 H 0 0 N N N 19.499 -18.387 -24.799 0.228 4.713 -0.087 H121 JXM 40 JXM H122 H122 H 0 0 N N N 19.139 -19.146 -23.211 -0.007 4.006 1.519 H122 JXM 41 JXM H17 H17 H 0 1 N N N 22.678 -16.754 -23.457 -1.996 2.022 1.571 H17 JXM 42 JXM H131 H131 H 0 0 N N N 17.805 -11.845 -23.033 3.529 -1.731 -2.052 H131 JXM 43 JXM H132 H132 H 0 0 N N N 18.689 -12.595 -21.660 1.970 -1.621 -1.195 H132 JXM 44 JXM H151 H151 H 0 0 N N N 17.024 -11.707 -20.075 2.901 -2.736 0.762 H151 JXM 45 JXM H152 H152 H 0 0 N N N 17.698 -10.371 -21.069 3.291 -3.724 -0.667 H152 JXM 46 JXM H141 H141 H 0 0 N N N 14.800 -14.147 -22.163 5.010 0.664 0.573 H141 JXM 47 JXM H142 H142 H 0 0 N N N 15.245 -12.960 -23.435 5.542 -0.218 -0.882 H142 JXM 48 JXM H161 H161 H 0 0 N N N 13.883 -11.789 -21.830 6.282 -1.476 1.073 H161 JXM 49 JXM H162 H162 H 0 0 N N N 14.827 -12.449 -20.451 4.648 -1.423 1.778 H162 JXM 50 JXM H181 H181 H 0 0 N N N 20.824 -13.592 -23.372 -0.590 -0.625 -1.074 H181 JXM 51 JXM H182 H182 H 0 0 N N N 22.287 -14.317 -24.121 -2.291 -0.124 -0.920 H182 JXM 52 JXM H27 H27 H 0 1 N N N 21.410 -15.811 -21.131 0.485 -1.533 0.936 H27 JXM 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JXM C1 C2 SING Y N 1 JXM C1 C3 DOUB Y N 2 JXM C2 C4 DOUB Y N 3 JXM C3 C5 SING Y N 4 JXM C4 C6 SING Y N 5 JXM C5 C6 DOUB Y N 6 JXM C6 C19 SING N N 7 JXM C7 C8 DOUB N N 8 JXM C7 C9 SING N N 9 JXM C8 N21 SING N N 10 JXM C8 N22 SING N N 11 JXM C9 N23 SING N N 12 JXM C9 O25 DOUB N N 13 JXM C10 N21 DOUB N N 14 JXM C10 N23 SING N N 15 JXM C10 N24 SING N N 16 JXM C11 C12 SING N N 17 JXM C11 C17 SING N N 18 JXM C12 N23 SING N N 19 JXM C13 C15 SING N N 20 JXM C13 N22 SING N N 21 JXM C14 C16 SING N N 22 JXM C14 N22 SING N N 23 JXM C15 O26 SING N N 24 JXM C16 O26 SING N N 25 JXM C17 C20 SING N N 26 JXM C17 N24 SING N N 27 JXM C18 C19 SING N N 28 JXM C18 N24 SING N N 29 JXM C19 O27 SING N N 30 JXM C20 F28 SING N N 31 JXM C20 F29 SING N N 32 JXM C20 F30 SING N N 33 JXM C1 H1 SING N N 34 JXM C2 H2 SING N N 35 JXM C3 H3 SING N N 36 JXM C4 H4 SING N N 37 JXM C5 H5 SING N N 38 JXM C19 H19 SING N N 39 JXM C7 H7 SING N N 40 JXM C11 H111 SING N N 41 JXM C11 H112 SING N N 42 JXM C12 H121 SING N N 43 JXM C12 H122 SING N N 44 JXM C17 H17 SING N N 45 JXM C13 H131 SING N N 46 JXM C13 H132 SING N N 47 JXM C15 H151 SING N N 48 JXM C15 H152 SING N N 49 JXM C14 H141 SING N N 50 JXM C14 H142 SING N N 51 JXM C16 H161 SING N N 52 JXM C16 H162 SING N N 53 JXM C18 H181 SING N N 54 JXM C18 H182 SING N N 55 JXM O27 H27 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JXM SMILES ACDLabs 12.01 "FC(F)(F)C3N(C2=NC(N1CCOCC1)=CC(=O)N2CC3)CC(O)c4ccccc4" JXM InChI InChI 1.03 "InChI=1S/C20H23F3N4O3/c21-20(22,23)16-6-7-26-18(29)12-17(25-8-10-30-11-9-25)24-19(26)27(16)13-15(28)14-4-2-1-3-5-14/h1-5,12,15-16,28H,6-11,13H2/t15-,16-/m0/s1" JXM InChIKey InChI 1.03 PZFUMOISBVVUGC-HOTGVXAUSA-N JXM SMILES_CANONICAL CACTVS 3.385 "O[C@@H](CN1[C@@H](CCN2C(=O)C=C(N=C12)N3CCOCC3)C(F)(F)F)c4ccccc4" JXM SMILES CACTVS 3.385 "O[CH](CN1[CH](CCN2C(=O)C=C(N=C12)N3CCOCC3)C(F)(F)F)c4ccccc4" JXM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)[C@H](CN2[C@@H](CCN3C2=NC(=CC3=O)N4CCOCC4)C(F)(F)F)O" JXM SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(CN2C(CCN3C2=NC(=CC3=O)N4CCOCC4)C(F)(F)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JXM "SYSTEMATIC NAME" ACDLabs 12.01 "(8S)-9-[(2R)-2-hydroxy-2-phenylethyl]-2-(morpholin-4-yl)-8-(trifluoromethyl)-6,7,8,9-tetrahydro-4H-pyrimido[1,2-a]pyrimidin-4-one" JXM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(8S)-2-morpholin-4-yl-9-[(2R)-2-oxidanyl-2-phenyl-ethyl]-8-(trifluoromethyl)-7,8-dihydro-6H-pyrimido[1,2-a]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JXM "Create component" 2014-08-12 EBI JXM "Initial release" 2014-11-26 RCSB #