data_K9E # _chem_comp.id K9E _chem_comp.name "[4-[[[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]amino]methyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-13 _chem_comp.pdbx_modified_date 2023-07-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K9E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GUH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K9E O3P O1 O 0 1 N N N 42.750 8.952 48.704 3.993 -2.174 1.190 O3P K9E 1 K9E P P1 P 0 1 N N N 41.643 9.582 49.514 4.280 -1.283 0.044 P K9E 2 K9E O1P O2 O 0 1 N N N 42.048 10.931 50.098 5.772 -0.693 0.183 O1P K9E 3 K9E O2P O3 O 0 1 N N N 40.977 8.711 50.550 4.157 -2.116 -1.328 O2P K9E 4 K9E O4P O4 O 0 1 N N N 40.476 10.060 48.394 3.222 -0.069 0.031 O4P K9E 5 K9E C5A C1 C 0 1 N N N 39.362 10.857 48.697 1.807 -0.269 0.022 C5A K9E 6 K9E C5 C2 C 0 1 Y N N 38.180 10.393 47.893 1.111 1.067 0.010 C5 K9E 7 K9E C6 C3 C 0 1 Y N N 37.810 11.089 46.772 1.842 2.237 0.003 C6 K9E 8 K9E N1 N1 N 0 1 Y N N 36.734 10.703 46.054 1.244 3.413 -0.013 N1 K9E 9 K9E C4 C4 C 0 1 Y N N 37.451 9.166 48.293 -0.287 1.139 0.001 C4 K9E 10 K9E C4A C5 C 0 1 N N N 37.918 8.501 49.559 -1.111 -0.086 0.003 C4A K9E 11 K9E C3 C6 C 0 1 Y N N 36.299 8.745 47.489 -0.884 2.410 -0.011 C3 K9E 12 K9E O3 O5 O 0 1 N N N 35.527 7.672 47.792 -2.235 2.539 -0.020 O3 K9E 13 K9E C2 C7 C 0 1 Y N N 35.980 9.598 46.305 -0.067 3.533 -0.023 C2 K9E 14 K9E C2A C8 C 0 1 N N N 34.799 9.235 45.453 -0.689 4.905 -0.040 C2A K9E 15 K9E O31 O6 O 0 1 N N N 35.245 8.056 51.655 -5.497 -2.018 -0.014 O31 K9E 16 K9E C31 C9 C 0 1 N N N 36.390 7.497 52.272 -4.700 -0.832 -0.016 C31 K9E 17 K9E C C10 C 0 1 N N N 37.273 6.777 51.275 -3.218 -1.214 -0.004 C K9E 18 K9E N N2 N 0 1 N N N 37.095 7.408 49.966 -2.401 0.002 -0.006 N K9E 19 K9E C21 C11 C 0 1 N N N 38.705 6.849 51.909 -2.912 -2.031 1.253 C21 K9E 20 K9E O2 O7 O 0 1 N N N 39.737 6.411 51.019 -3.213 -1.253 2.413 O2 K9E 21 K9E C1 C12 C 0 1 N N N 36.777 5.341 51.080 -2.896 -2.047 -1.246 C1 K9E 22 K9E O1 O8 O 0 1 N N N 35.647 5.338 50.172 -3.070 -1.245 -2.416 O1 K9E 23 K9E H1 H1 H 0 1 N N N 42.940 11.133 49.841 6.462 -1.370 0.198 H1 K9E 24 K9E H2 H2 H 0 1 N N N 41.373 7.848 50.540 4.333 -1.594 -2.122 H2 K9E 25 K9E H3 H3 H 0 1 N N N 39.584 11.906 48.451 1.526 -0.834 -0.867 H3 K9E 26 K9E H4 H4 H 0 1 N N N 39.132 10.773 49.769 1.514 -0.824 0.913 H4 K9E 27 K9E H5 H5 H 0 1 N N N 38.382 11.951 46.461 2.921 2.189 0.010 H5 K9E 28 K9E H6 H6 H 0 1 N N N 38.792 8.820 50.107 -0.636 -1.056 0.012 H6 K9E 29 K9E H8 H8 H 0 1 N N N 35.869 7.245 48.569 -2.632 2.582 0.860 H8 K9E 30 K9E H9 H9 H 0 1 N N N 34.679 9.981 44.654 -0.833 5.226 -1.072 H9 K9E 31 K9E H10 H10 H 0 1 N N N 34.960 8.243 45.007 -1.653 4.874 0.468 H10 K9E 32 K9E H11 H11 H 0 1 N N N 33.891 9.215 46.074 -0.032 5.609 0.471 H11 K9E 33 K9E H12 H12 H 0 1 N N N 34.716 8.498 52.309 -6.449 -1.852 -0.021 H12 K9E 34 K9E H13 H13 H 0 1 N N N 36.066 6.781 53.042 -4.918 -0.250 -0.911 H13 K9E 35 K9E H14 H14 H 0 1 N N N 36.970 8.304 52.743 -4.929 -0.238 0.869 H14 K9E 36 K9E H17 H17 H 0 1 N N N 38.723 6.212 52.806 -3.520 -2.936 1.255 H17 K9E 37 K9E H18 H18 H 0 1 N N N 38.909 7.891 52.195 -1.857 -2.303 1.261 H18 K9E 38 K9E H19 H19 H 0 1 N N N 40.579 6.476 51.454 -3.043 -1.709 3.248 H19 K9E 39 K9E H20 H20 H 0 1 N N N 36.468 4.925 52.050 -1.863 -2.393 -1.193 H20 K9E 40 K9E H21 H21 H 0 1 N N N 37.587 4.727 50.659 -3.565 -2.906 -1.291 H21 K9E 41 K9E H22 H22 H 0 1 N N N 35.340 4.447 50.051 -2.883 -1.711 -3.243 H22 K9E 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K9E C2A C2 SING N N 1 K9E N1 C2 DOUB Y N 2 K9E N1 C6 SING Y N 3 K9E C2 C3 SING Y N 4 K9E C6 C5 DOUB Y N 5 K9E C3 O3 SING N N 6 K9E C3 C4 DOUB Y N 7 K9E C5 C4 SING Y N 8 K9E C5 C5A SING N N 9 K9E C4 C4A SING N N 10 K9E O4P C5A SING N N 11 K9E O4P P SING N N 12 K9E O3P P DOUB N N 13 K9E P O1P SING N N 14 K9E P O2P SING N N 15 K9E C4A N DOUB N N 16 K9E N C SING N N 17 K9E O1 C1 SING N N 18 K9E O2 C21 SING N N 19 K9E C1 C SING N N 20 K9E C C21 SING N N 21 K9E C C31 SING N N 22 K9E O31 C31 SING N N 23 K9E O1P H1 SING N N 24 K9E O2P H2 SING N N 25 K9E C5A H3 SING N N 26 K9E C5A H4 SING N N 27 K9E C6 H5 SING N N 28 K9E C4A H6 SING N N 29 K9E O3 H8 SING N N 30 K9E C2A H9 SING N N 31 K9E C2A H10 SING N N 32 K9E C2A H11 SING N N 33 K9E O31 H12 SING N N 34 K9E C31 H13 SING N N 35 K9E C31 H14 SING N N 36 K9E C21 H17 SING N N 37 K9E C21 H18 SING N N 38 K9E O2 H19 SING N N 39 K9E C1 H20 SING N N 40 K9E C1 H21 SING N N 41 K9E O1 H22 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K9E InChI InChI 1.06 "InChI=1S/C12H19N2O8P/c1-8-11(18)10(3-14-12(5-15,6-16)7-17)9(2-13-8)4-22-23(19,20)21/h2-3,15-18H,4-7H2,1H3,(H2,19,20,21)/b14-3+" K9E InChIKey InChI 1.06 GKGTZXISICTHPS-LZWSPWQCSA-N K9E SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NC(CO)(CO)CO)c1O" K9E SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NC(CO)(CO)CO)c1O" K9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/C(CO)(CO)CO)O" K9E SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(CO)(CO)CO)O" # _pdbx_chem_comp_identifier.comp_id K9E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[4-[(~{E})-[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]iminomethyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K9E "Create component" 2022-09-13 PDBJ K9E "Modify formula" 2022-09-14 PDBJ K9E "Modify formula" 2022-09-16 PDBJ K9E "Initial release" 2023-07-19 RCSB #