data_KD3 # _chem_comp.id KD3 _chem_comp.name "3-deoxy-beta-D-manno-oct-2-ulopyranosonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H14 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-14 _chem_comp.pdbx_modified_date 2023-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 238.192 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KD3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FUX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KD3 C1 C1 C 0 1 N N N -22.015 -3.663 -14.356 -1.583 1.479 0.607 C1 KD3 1 KD3 O1A O1 O 0 1 N N N -21.848 -2.442 -14.620 -0.670 1.881 1.289 O1A KD3 2 KD3 O1B O2 O 0 1 N N N -22.849 -4.035 -13.497 -2.851 1.673 1.001 O1B KD3 3 KD3 C2 C2 C 0 1 N N S -21.177 -4.720 -15.140 -1.297 0.765 -0.689 C2 KD3 4 KD3 C3 C3 C 0 1 N N N -20.656 -5.845 -14.257 -1.993 -0.599 -0.684 C3 KD3 5 KD3 C4 C4 C 0 1 N N R -19.503 -5.407 -13.373 -1.420 -1.452 0.452 C4 KD3 6 KD3 O4 O3 O 0 1 N N N -18.985 -6.508 -12.664 -2.011 -2.752 0.418 O4 KD3 7 KD3 C5 C5 C 0 1 N N R -18.440 -4.726 -14.258 0.096 -1.573 0.271 C5 KD3 8 KD3 O5 O4 O 0 1 N N N -17.868 -5.661 -15.158 0.377 -2.256 -0.953 O5 KD3 9 KD3 C6 C6 C 0 1 N N R -19.064 -3.584 -15.060 0.711 -0.172 0.230 C6 KD3 10 KD3 O6 O5 O 0 1 N N N -20.123 -4.102 -15.881 0.113 0.579 -0.830 O6 KD3 11 KD3 C7 C7 C 0 1 N N R -18.116 -2.719 -15.963 2.217 -0.282 -0.011 C7 KD3 12 KD3 O7 O6 O 0 1 N N N -17.439 -1.875 -15.061 2.815 -1.034 1.048 O7 KD3 13 KD3 C8 C8 C 0 1 N N N -18.965 -1.898 -16.931 2.832 1.118 -0.052 C8 KD3 14 KD3 O8 O7 O 0 1 N N N -19.981 -1.144 -16.284 4.216 1.021 -0.392 O8 KD3 15 KD3 O1 O8 O 0 1 N Y N -22.035 -5.358 -16.005 -1.786 1.546 -1.781 O1 KD3 16 KD3 H1 H1 H 0 1 N N N -23.283 -3.275 -13.127 -2.985 2.139 1.838 H1 KD3 17 KD3 H31 H2 H 0 1 N N N -21.477 -6.199 -13.616 -3.063 -0.461 -0.533 H31 KD3 18 KD3 H32 H3 H 0 1 N N N -20.313 -6.668 -14.901 -1.820 -1.099 -1.637 H32 KD3 19 KD3 H4 H4 H 0 1 N N N -19.882 -4.657 -12.663 -1.638 -0.977 1.409 H4 KD3 20 KD3 HO4 H5 H 0 1 N N N -19.672 -6.895 -12.134 -2.973 -2.750 0.521 HO4 KD3 21 KD3 H5 H6 H 0 1 N N N -17.661 -4.308 -13.604 0.519 -2.132 1.106 H5 KD3 22 KD3 HO5 H7 H 0 1 N N N -17.477 -6.375 -14.668 0.013 -3.150 -0.997 HO5 KD3 23 KD3 H6 H8 H 0 1 N N N -19.511 -2.892 -14.331 0.530 0.333 1.179 H6 KD3 24 KD3 H7 H9 H 0 1 N N N -17.427 -3.374 -16.517 2.398 -0.786 -0.961 H7 KD3 25 KD3 H2 H10 H 0 1 N N N -16.916 -2.400 -14.467 2.694 -0.643 1.924 H2 KD3 26 KD3 H82 H11 H 0 1 N N N -19.441 -2.584 -17.647 2.315 1.719 -0.800 H82 KD3 27 KD3 H81 H12 H 0 1 N N N -18.305 -1.204 -17.472 2.730 1.589 0.926 H81 KD3 28 KD3 HO8 H13 H 0 1 N N N -20.524 -1.725 -15.764 4.671 1.873 -0.437 HO8 KD3 29 KD3 H3 H14 H 0 1 N N N -22.735 -5.769 -15.512 -1.388 2.425 -1.846 H3 KD3 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KD3 C8 O8 SING N N 1 KD3 C8 C7 SING N N 2 KD3 C7 O7 SING N N 3 KD3 C7 C6 SING N N 4 KD3 O6 C2 SING N N 5 KD3 O6 C6 SING N N 6 KD3 O5 C5 SING N N 7 KD3 C2 C1 SING N N 8 KD3 C2 C3 SING N N 9 KD3 C6 C5 SING N N 10 KD3 O1A C1 DOUB N N 11 KD3 C1 O1B SING N N 12 KD3 C5 C4 SING N N 13 KD3 C3 C4 SING N N 14 KD3 C4 O4 SING N N 15 KD3 C2 O1 SING N N 16 KD3 O1B H1 SING N N 17 KD3 C3 H31 SING N N 18 KD3 C3 H32 SING N N 19 KD3 C4 H4 SING N N 20 KD3 O4 HO4 SING N N 21 KD3 C5 H5 SING N N 22 KD3 O5 HO5 SING N N 23 KD3 C6 H6 SING N N 24 KD3 C7 H7 SING N N 25 KD3 O7 H2 SING N N 26 KD3 C8 H82 SING N N 27 KD3 C8 H81 SING N N 28 KD3 O8 HO8 SING N N 29 KD3 O1 H3 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KD3 SMILES ACDLabs 12.01 "OC(=O)C1(O)CC(O)C(O)C(O1)C(O)CO" KD3 InChI InChI 1.06 "InChI=1S/C8H14O8/c9-2-4(11)6-5(12)3(10)1-8(15,16-6)7(13)14/h3-6,9-12,15H,1-2H2,(H,13,14)/t3-,4-,5-,6-,8+/m1/s1" KD3 InChIKey InChI 1.06 NNLZBVFSCVTSLA-FBXMPTEYSA-N KD3 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H](O)[C@H]1O[C@@](O)(C[C@@H](O)[C@H]1O)C(O)=O" KD3 SMILES CACTVS 3.385 "OC[CH](O)[CH]1O[C](O)(C[CH](O)[CH]1O)C(O)=O" KD3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@H]([C@H](O[C@@]1(C(=O)O)O)[C@@H](CO)O)O)O" KD3 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(OC1(C(=O)O)O)C(CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KD3 "SYSTEMATIC NAME" ACDLabs 12.01 "3-deoxy-beta-D-manno-oct-2-ulopyranosonic acid" KD3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2,4,5-tris(oxidanyl)oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KD3 "Create component" 2023-02-14 RCSB KD3 "Initial release" 2023-03-08 RCSB #