data_KIT # _chem_comp.id KIT _chem_comp.name "(1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-26-oxa-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3(8),4,6,9-tetraen-11-yne-16,20-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H33 N13 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 679.644 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KIT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KIT N1 N1 N 0 1 Y N N 19.870 3.989 7.995 9.988 -1.072 -1.579 N1 KIT 1 KIT C7 C1 C 0 1 N N N 14.333 9.873 10.667 1.781 0.511 0.991 C7 KIT 2 KIT C8 C2 C 0 1 N N N 14.777 10.242 13.071 0.194 -0.282 -0.653 C8 KIT 3 KIT N2 N2 N 0 1 Y N N 19.353 6.157 8.898 7.906 -1.831 -0.924 N2 KIT 4 KIT C9 C3 C 0 1 N N N 16.180 10.662 12.914 -1.032 -0.301 0.178 C9 KIT 5 KIT O1 O1 O 0 1 N N N 19.616 8.135 13.044 -4.345 1.059 -0.271 O1 KIT 6 KIT C1 C4 C 0 1 Y N N 20.145 5.111 8.661 9.139 -2.052 -1.327 C1 KIT 7 KIT O5 O2 O 0 1 N N N 19.097 9.649 16.224 -6.294 -0.260 -2.886 O5 KIT 8 KIT C5 C5 C 0 1 N N R 17.054 8.178 8.985 5.056 -0.762 0.020 C5 KIT 9 KIT C6 C6 C 0 1 N N R 15.672 9.664 10.000 2.870 -0.516 0.675 C6 KIT 10 KIT N3 N3 N 0 1 Y N N 16.386 5.031 7.256 7.633 1.623 -0.758 N3 KIT 11 KIT C4 C7 C 0 1 Y N N 16.065 6.217 7.719 6.426 1.319 -0.375 C4 KIT 12 KIT O4 O3 O 0 1 N N N 19.656 6.988 15.750 -6.859 2.165 -2.394 O4 KIT 13 KIT C3 C8 C 0 1 Y N N 17.702 4.868 7.663 8.326 0.487 -1.007 C3 KIT 14 KIT O3 O4 O 0 1 N N N 11.889 6.709 12.631 0.747 1.726 2.223 O3 KIT 15 KIT C2 C9 C 0 1 Y N N 18.139 5.974 8.371 7.461 -0.591 -0.752 C2 KIT 16 KIT N4 N4 N 0 1 Y N N 17.075 6.842 8.400 6.271 -0.035 -0.356 N4 KIT 17 KIT N N5 N 0 1 N N N 18.368 2.711 6.798 10.530 1.220 -1.701 N KIT 18 KIT C C10 C 0 1 Y N N 18.634 3.830 7.471 9.633 0.200 -1.435 C KIT 19 KIT O O5 O 0 1 N N N 16.018 8.267 9.949 3.893 0.076 -0.154 O KIT 20 KIT C10 C11 C 0 1 N N N 17.356 10.891 12.839 -2.114 -0.729 0.500 C10 KIT 21 KIT C11 C12 C 0 1 Y N N 18.754 11.263 12.697 -3.236 -1.613 0.319 C11 KIT 22 KIT C12 C13 C 0 1 Y N N 20.573 12.281 12.187 -4.494 -3.381 0.404 C12 KIT 23 KIT C13 C14 C 0 1 Y N N 21.596 13.122 11.711 -5.099 -4.638 0.598 C13 KIT 24 KIT C14 C15 C 0 1 Y N N 23.102 11.673 12.702 -6.847 -3.957 -0.744 C14 KIT 25 KIT C15 C16 C 0 1 Y N N 20.965 11.159 12.898 -5.159 -2.435 -0.399 C15 KIT 26 KIT C16 C17 C 0 1 N N R 19.762 9.222 13.943 -4.631 -0.061 -1.114 C16 KIT 27 KIT C17 C18 C 0 1 N N R 18.718 7.152 13.606 -5.272 2.112 -0.549 C17 KIT 28 KIT C18 C19 C 0 1 N N N 17.518 7.260 12.686 -5.652 2.821 0.751 C18 KIT 29 KIT C19 C20 C 0 1 N N N 16.191 5.323 11.994 -3.740 4.293 0.664 C19 KIT 30 KIT C20 C21 C 0 1 N N N 14.827 4.706 12.154 -2.502 4.901 1.274 C20 KIT 31 KIT C21 C22 C 0 1 N N N 13.829 5.322 11.185 -1.257 4.219 0.701 C21 KIT 32 KIT C22 C23 C 0 1 N N N 12.807 7.336 12.121 0.168 2.401 1.399 C22 KIT 33 KIT C23 C24 C 0 1 N N N 12.939 8.837 12.313 0.257 2.065 -0.068 C23 KIT 34 KIT C24 C25 C 0 1 N N S 18.549 7.561 15.063 -6.516 1.479 -1.188 C24 KIT 35 KIT C25 C26 C 0 1 N N R 18.665 9.079 14.993 -6.120 0.021 -1.496 C25 KIT 36 KIT C26 C27 C 0 1 N N S 15.611 10.053 8.529 3.603 -0.937 1.967 C26 KIT 37 KIT C27 C28 C 0 1 N N R 16.801 9.283 7.942 5.075 -1.103 1.527 C27 KIT 38 KIT N10 N6 N 0 1 Y N N 19.806 10.482 13.223 -4.354 -1.319 -0.420 N10 KIT 39 KIT N11 N7 N 0 1 N N N 16.503 6.243 12.902 -4.430 3.361 1.381 N11 KIT 40 KIT N12 N8 N 0 1 N N N 13.737 6.764 11.361 -0.576 3.478 1.783 N12 KIT 41 KIT N5 N9 N 0 1 N N N 14.284 9.338 12.032 1.044 0.838 -0.237 N5 KIT 42 KIT N6 N10 N 0 1 Y N N 19.181 12.346 12.073 -3.336 -2.820 0.816 N6 KIT 43 KIT N7 N11 N 0 1 N N N 21.382 14.241 11.016 -4.496 -5.601 1.388 N7 KIT 44 KIT N8 N12 N 0 1 Y N N 22.875 12.778 11.987 -6.263 -4.875 0.005 N8 KIT 45 KIT N9 N13 N 0 1 Y N N 22.220 10.803 13.198 -6.321 -2.767 -0.945 N9 KIT 46 KIT O2 O6 O 0 1 N N N 16.917 5.040 11.042 -4.114 4.626 -0.440 O2 KIT 47 KIT O6 O7 O 0 1 N N N 15.731 11.452 8.295 3.082 -2.174 2.459 O6 KIT 48 KIT O7 O8 O 0 1 N N N 17.941 10.124 7.837 5.510 -2.449 1.731 O7 KIT 49 KIT H13 H1 H 0 1 N N N 14.125 10.952 10.706 1.093 0.096 1.728 H13 KIT 50 KIT H12 H2 H 0 1 N N N 13.560 9.372 10.066 2.239 1.416 1.391 H12 KIT 51 KIT H15 H3 H 0 1 N N N 14.148 11.144 13.065 0.736 -1.219 -0.524 H15 KIT 52 KIT H14 H4 H 0 1 N N N 14.679 9.733 14.041 -0.079 -0.162 -1.702 H14 KIT 53 KIT H10 H5 H 0 1 N N N 21.145 5.182 9.063 9.469 -3.072 -1.457 H10 KIT 54 KIT H30 H6 H 0 1 N N N 18.410 9.557 16.874 -7.214 -0.222 -3.183 H30 KIT 55 KIT H H7 H 0 1 N N N 18.024 8.377 9.464 4.961 -1.672 -0.573 H KIT 56 KIT H1 H8 H 0 1 N N N 16.449 10.249 10.514 2.438 -1.386 0.181 H1 KIT 57 KIT H11 H9 H 0 1 N N N 15.091 6.660 7.575 5.661 2.035 -0.112 H11 KIT 58 KIT H29 H10 H 0 1 N N N 19.606 7.210 16.672 -7.638 1.808 -2.842 H29 KIT 59 KIT H9 H11 H 0 1 N N N 19.180 2.127 6.787 10.259 2.145 -1.592 H9 KIT 60 KIT H8 H12 H 0 1 N N N 17.615 2.226 7.242 11.430 1.010 -1.996 H8 KIT 61 KIT H18 H13 H 0 1 N N N 24.140 11.454 12.906 -7.793 -4.193 -1.210 H18 KIT 62 KIT H2 H14 H 0 1 N N N 20.721 9.104 14.468 -4.021 0.001 -2.017 H2 KIT 63 KIT H3 H15 H 0 1 N N N 19.149 6.142 13.547 -4.823 2.826 -1.239 H3 KIT 64 KIT H20 H16 H 0 1 N N N 17.872 7.178 11.648 -6.341 3.637 0.534 H20 KIT 65 KIT H19 H17 H 0 1 N N N 17.055 8.246 12.839 -6.128 2.110 1.428 H19 KIT 66 KIT H22 H18 H 0 1 N N N 14.477 4.871 13.184 -2.470 5.966 1.043 H22 KIT 67 KIT H23 H19 H 0 1 N N N 14.897 3.626 11.959 -2.525 4.765 2.355 H23 KIT 68 KIT H24 H20 H 0 1 N N N 12.839 4.876 11.360 -1.552 3.525 -0.087 H24 KIT 69 KIT H25 H21 H 0 1 N N N 14.151 5.107 10.155 -0.582 4.971 0.294 H25 KIT 70 KIT H27 H22 H 0 1 N N N 12.686 9.080 13.356 -0.745 1.913 -0.468 H27 KIT 71 KIT H28 H23 H 0 1 N N N 12.231 9.339 11.638 0.741 2.884 -0.600 H28 KIT 72 KIT H4 H24 H 0 1 N N N 17.575 7.245 15.465 -7.353 1.502 -0.490 H4 KIT 73 KIT H5 H25 H 0 1 N N N 17.725 9.524 14.636 -6.707 -0.669 -0.891 H5 KIT 74 KIT H6 H26 H 0 1 N N N 14.680 9.665 8.090 3.517 -0.159 2.726 H6 KIT 75 KIT H7 H27 H 0 1 N N N 16.527 8.837 6.974 5.716 -0.407 2.068 H7 KIT 76 KIT H21 H28 H 0 1 N N N 16.016 6.235 13.775 -4.135 3.068 2.258 H21 KIT 77 KIT H26 H29 H 0 1 N N N 14.399 7.348 10.892 -0.654 3.742 2.713 H26 KIT 78 KIT H17 H31 H 0 1 N N N 22.258 14.671 10.798 -4.924 -6.463 1.513 H17 KIT 79 KIT H16 H32 H 0 1 N N N 20.899 14.020 10.169 -3.645 -5.415 1.815 H16 KIT 80 KIT H31 H33 H 0 1 N N N 14.982 11.901 8.669 3.507 -2.485 3.270 H31 KIT 81 KIT H32 H34 H 0 1 N N N 18.666 9.631 7.472 5.484 -2.735 2.654 H32 KIT 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KIT N C SING N N 1 KIT N3 C3 SING Y N 2 KIT N3 C4 DOUB Y N 3 KIT C C3 DOUB Y N 4 KIT C N1 SING Y N 5 KIT C3 C2 SING Y N 6 KIT C4 N4 SING Y N 7 KIT O7 C27 SING N N 8 KIT C27 C26 SING N N 9 KIT C27 C5 SING N N 10 KIT N1 C1 DOUB Y N 11 KIT O6 C26 SING N N 12 KIT C2 N4 SING Y N 13 KIT C2 N2 DOUB Y N 14 KIT N4 C5 SING N N 15 KIT C26 C6 SING N N 16 KIT C1 N2 SING Y N 17 KIT C5 O SING N N 18 KIT O C6 SING N N 19 KIT C6 C7 SING N N 20 KIT C7 N5 SING N N 21 KIT N7 C13 SING N N 22 KIT O2 C19 DOUB N N 23 KIT C21 N12 SING N N 24 KIT C21 C20 SING N N 25 KIT N12 C22 SING N N 26 KIT C13 N8 DOUB Y N 27 KIT C13 C12 SING Y N 28 KIT N8 C14 SING Y N 29 KIT C19 C20 SING N N 30 KIT C19 N11 SING N N 31 KIT N5 C23 SING N N 32 KIT N5 C8 SING N N 33 KIT N6 C12 SING Y N 34 KIT N6 C11 DOUB Y N 35 KIT C22 C23 SING N N 36 KIT C22 O3 DOUB N N 37 KIT C12 C15 DOUB Y N 38 KIT C18 N11 SING N N 39 KIT C18 C17 SING N N 40 KIT C11 C10 SING N N 41 KIT C11 N10 SING Y N 42 KIT C14 N9 DOUB Y N 43 KIT C10 C9 TRIP N N 44 KIT C15 N9 SING Y N 45 KIT C15 N10 SING Y N 46 KIT C9 C8 SING N N 47 KIT O1 C17 SING N N 48 KIT O1 C16 SING N N 49 KIT N10 C16 SING N N 50 KIT C17 C24 SING N N 51 KIT C16 C25 SING N N 52 KIT C25 C24 SING N N 53 KIT C25 O5 SING N N 54 KIT C24 O4 SING N N 55 KIT C7 H13 SING N N 56 KIT C7 H12 SING N N 57 KIT C8 H15 SING N N 58 KIT C8 H14 SING N N 59 KIT C1 H10 SING N N 60 KIT O5 H30 SING N N 61 KIT C5 H SING N N 62 KIT C6 H1 SING N N 63 KIT C4 H11 SING N N 64 KIT O4 H29 SING N N 65 KIT N H9 SING N N 66 KIT N H8 SING N N 67 KIT C14 H18 SING N N 68 KIT C16 H2 SING N N 69 KIT C17 H3 SING N N 70 KIT C18 H20 SING N N 71 KIT C18 H19 SING N N 72 KIT C20 H22 SING N N 73 KIT C20 H23 SING N N 74 KIT C21 H24 SING N N 75 KIT C21 H25 SING N N 76 KIT C23 H27 SING N N 77 KIT C23 H28 SING N N 78 KIT C24 H4 SING N N 79 KIT C25 H5 SING N N 80 KIT C26 H6 SING N N 81 KIT C27 H7 SING N N 82 KIT N11 H21 SING N N 83 KIT N12 H26 SING N N 84 KIT N7 H17 SING N N 85 KIT N7 H16 SING N N 86 KIT O6 H31 SING N N 87 KIT O7 H32 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KIT InChI InChI 1.06 "InChI=1S/C28H33N13O8/c29-23-17-25(35-9-33-23)40(11-37-17)27-21(46)20(45)13(49-27)7-39-5-1-2-14-38-18-24(30)34-10-36-26(18)41(14)28-22(47)19(44)12(48-28)6-32-15(42)3-4-31-16(43)8-39/h9-13,19-22,27-28,44-47H,3-8H2,(H,31,43)(H,32,42)(H2,29,33,35)(H2,30,34,36)/t12-,13-,19-,20-,21-,22-,27-,28-/m1/s1" KIT InChIKey InChI 1.06 VNLJLUGLNRIXOB-QJYUSYPVSA-N KIT SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN4CC#Cc5nc6c(N)ncnc6n5[C@@H]7O[C@H](CNC(=O)CCNC(=O)C4)[C@@H](O)[C@H]7O)[C@@H](O)[C@H]3O" KIT SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN4CC#Cc5nc6c(N)ncnc6n5[CH]7O[CH](CNC(=O)CCNC(=O)C4)[CH](O)[CH]7O)[CH](O)[CH]3O" KIT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN4CC#Cc5nc6c(ncnc6n5[C@H]7[C@@H]([C@@H]([C@H](O7)CNC(=O)CCNC(=O)C4)O)O)N)O)O)N" KIT SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN4CC#Cc5nc6c(ncnc6n5C7C(C(C(O7)CNC(=O)CCNC(=O)C4)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id KIT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-26-oxa-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3(8),4,6,9-tetraen-11-yne-16,20-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KIT "Create component" 2022-05-25 PDBE KIT "Modify descriptor" 2022-08-22 RCSB KIT "Initial release" 2023-01-11 RCSB #