data_KS9 # _chem_comp.id KS9 _chem_comp.name "(phenylmethyl) N-[(3S,4S)-4-methyl-2-oxidanylidene-hexan-3-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "benzyl ((3S,4R)-1-chloro-4-methyl-2-oxohexan-3-yl)carb (reacted form of)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 263.332 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KS9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A1L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KS9 C15 C1 C 0 1 N N N N N N 22.353 -86.612 52.475 0.148 -0.495 -0.589 C15 KS9 1 KS9 C17 C2 C 0 1 N N N N N N 23.972 -84.853 52.575 -2.208 -0.835 -0.759 C17 KS9 2 KS9 C20 C3 C 0 1 Y N N N N N 26.199 -84.149 55.665 -5.233 -0.218 1.414 C20 KS9 3 KS9 C21 C4 C 0 1 Y N N N N N 25.873 -82.806 55.946 -5.858 0.810 0.732 C21 KS9 4 KS9 C22 C5 C 0 1 Y N N N N N 24.937 -82.127 55.143 -5.303 1.303 -0.435 C22 KS9 5 KS9 C01 C6 C 0 1 N N N N N N 17.602 -83.865 52.912 4.619 2.484 1.191 C01 KS9 6 KS9 C02 C7 C 0 1 N N N N N N 18.715 -84.931 53.048 3.542 1.409 1.033 C02 KS9 7 KS9 C03 C8 C 0 1 N N S N N N 19.993 -84.345 53.698 3.549 0.887 -0.405 C03 KS9 8 KS9 C04 C9 C 0 1 N N S N N N 20.927 -85.424 54.212 2.575 -0.286 -0.527 C04 KS9 9 KS9 C05 C10 C 0 1 N N N N N N 20.380 -86.065 55.487 3.032 -1.413 0.363 C05 KS9 10 KS9 C06 C11 C 0 1 N N N N N N 20.767 -87.522 55.854 4.201 -2.271 -0.048 C06 KS9 11 KS9 C18 C12 C 0 1 Y N N N N N 24.660 -84.105 53.791 -3.494 -0.252 -0.231 C18 KS9 12 KS9 C19 C13 C 0 1 Y N N N N N 25.603 -84.792 54.598 -4.051 -0.748 0.932 C19 KS9 13 KS9 C23 C14 C 0 1 Y N N N N N 24.334 -82.777 54.072 -4.124 0.768 -0.919 C23 KS9 14 KS9 C25 C15 C 0 1 N N N N N N 20.719 -83.364 52.673 3.120 2.007 -1.356 C25 KS9 15 KS9 N14 N1 N 0 1 N N N N N N 21.075 -86.446 53.200 1.236 0.146 -0.118 N14 KS9 16 KS9 O13 O1 O 0 1 N N N N N N 19.677 -85.462 56.207 2.462 -1.629 1.405 O13 KS9 17 KS9 O16 O2 O 0 1 N N N N N N 23.561 -86.124 53.044 -1.082 -0.098 -0.213 O16 KS9 18 KS9 O24 O3 O 0 1 N N N N N N 22.378 -87.163 51.422 0.277 -1.429 -1.356 O24 KS9 19 KS9 H1 H1 H 0 1 N N N N N N 24.690 -84.970 51.750 -2.135 -1.881 -0.464 H1 KS9 20 KS9 H2 H2 H 0 1 N N N N N N 23.100 -84.281 52.225 -2.196 -0.762 -1.847 H2 KS9 21 KS9 H3 H3 H 0 1 N N N N N N 26.913 -84.673 56.283 -5.667 -0.603 2.325 H3 KS9 22 KS9 H4 H4 H 0 1 N N N N N N 26.341 -82.299 56.777 -6.779 1.227 1.110 H4 KS9 23 KS9 H5 H5 H 0 1 N N N N N N 24.687 -81.099 55.359 -5.791 2.105 -0.967 H5 KS9 24 KS9 H6 H6 H 0 1 N N N N N N 16.714 -84.319 52.448 4.614 2.855 2.216 H6 KS9 25 KS9 H7 H7 H 0 1 N N N N N N 17.339 -83.481 53.909 5.596 2.056 0.965 H7 KS9 26 KS9 H8 H8 H 0 1 N N N N N N 17.962 -83.037 52.283 4.415 3.306 0.505 H8 KS9 27 KS9 H9 H9 H 0 1 N N N N N N 18.344 -85.756 53.673 3.746 0.586 1.719 H9 KS9 28 KS9 H10 H10 H 0 1 N N N N N N 18.967 -85.313 52.048 2.566 1.837 1.260 H10 KS9 29 KS9 H11 H11 H 0 1 N N N N N N 19.677 -83.735 54.557 4.554 0.554 -0.666 H11 KS9 30 KS9 H12 H12 H 0 1 N N N N N N 21.905 -84.973 54.434 2.546 -0.629 -1.561 H12 KS9 31 KS9 H13 H13 H 0 1 N N N N N N 20.291 -87.799 56.806 5.130 -1.791 0.259 H13 KS9 32 KS9 H14 H14 H 0 1 N N N N N N 20.424 -88.203 55.061 4.122 -3.247 0.430 H14 KS9 33 KS9 H15 H15 H 0 1 N N N N N N 21.860 -87.597 55.955 4.198 -2.395 -1.131 H15 KS9 34 KS9 H16 H16 H 0 1 N N N N N N 25.855 -85.819 54.378 -3.558 -1.545 1.470 H16 KS9 35 KS9 H17 H17 H 0 1 N N N N N N 23.614 -82.255 53.458 -3.689 1.156 -1.828 H17 KS9 36 KS9 H18 H18 H 0 1 N N N N N N 21.625 -82.951 53.139 3.814 2.843 -1.269 H18 KS9 37 KS9 H19 H19 H 0 1 N N N N N N 20.995 -83.921 51.766 3.125 1.635 -2.380 H19 KS9 38 KS9 H20 H20 H 0 1 N N N N N N 20.037 -82.543 52.406 2.116 2.340 -1.095 H20 KS9 39 KS9 H21 H21 H 0 1 N N N N N N 20.305 -87.047 52.988 1.133 0.893 0.491 H21 KS9 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KS9 O24 C15 DOUB N N 1 KS9 C15 O16 SING N N 2 KS9 C15 N14 SING N N 3 KS9 C17 O16 SING N N 4 KS9 C17 C18 SING N N 5 KS9 C25 C03 SING N N 6 KS9 C01 C02 SING N N 7 KS9 C02 C03 SING N N 8 KS9 N14 C04 SING N N 9 KS9 C03 C04 SING N N 10 KS9 C18 C23 DOUB Y N 11 KS9 C18 C19 SING Y N 12 KS9 C23 C22 SING Y N 13 KS9 C04 C05 SING N N 14 KS9 C19 C20 DOUB Y N 15 KS9 C22 C21 DOUB Y N 16 KS9 C05 C06 SING N N 17 KS9 C05 O13 DOUB N N 18 KS9 C20 C21 SING Y N 19 KS9 C17 H1 SING N N 20 KS9 C17 H2 SING N N 21 KS9 C20 H3 SING N N 22 KS9 C21 H4 SING N N 23 KS9 C22 H5 SING N N 24 KS9 C01 H6 SING N N 25 KS9 C01 H7 SING N N 26 KS9 C01 H8 SING N N 27 KS9 C02 H9 SING N N 28 KS9 C02 H10 SING N N 29 KS9 C03 H11 SING N N 30 KS9 C04 H12 SING N N 31 KS9 C06 H13 SING N N 32 KS9 C06 H14 SING N N 33 KS9 C06 H15 SING N N 34 KS9 C19 H16 SING N N 35 KS9 C23 H17 SING N N 36 KS9 C25 H18 SING N N 37 KS9 C25 H19 SING N N 38 KS9 C25 H20 SING N N 39 KS9 N14 H21 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KS9 InChI InChI 1.06 "InChI=1S/C15H21NO3/c1-4-11(2)14(12(3)17)16-15(18)19-10-13-8-6-5-7-9-13/h5-9,11,14H,4,10H2,1-3H3,(H,16,18)/t11-,14-/m0/s1" KS9 InChIKey InChI 1.06 TXYUIZZOGVQKQF-FZMZJTMJSA-N KS9 SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](NC(=O)OCc1ccccc1)C(C)=O" KS9 SMILES CACTVS 3.385 "CC[CH](C)[CH](NC(=O)OCc1ccccc1)C(C)=O" KS9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)C)NC(=O)OCc1ccccc1" KS9 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)C)NC(=O)OCc1ccccc1" # _pdbx_chem_comp_identifier.comp_id KS9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(phenylmethyl) ~{N}-[(3~{S},4~{S})-4-methyl-2-oxidanylidene-hexan-3-yl]carbamate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KS9 _pdbx_chem_comp_synonyms.name "benzyl ((3S,4R)-1-chloro-4-methyl-2-oxohexan-3-yl)carb (reacted form of)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KS9 "Create component" 2022-06-07 PDBE KS9 "Modify synonyms" 2022-06-07 PDBE KS9 "Modify descriptor" 2022-08-22 RCSB KS9 "Initial release" 2023-06-14 RCSB KS9 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KS9 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C06 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #