data_KU5 # _chem_comp.id KU5 _chem_comp.name "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-[2-(phenylsulfonyl)ethyl]-1,6-dihydropyrimidine-4-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H25 Cl N4 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SRI-30024 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-11 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 577.072 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KU5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WEB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KU5 C1 C1 C 0 1 N N N 194.850 -311.558 692.421 -4.546 0.718 0.015 C1 KU5 1 KU5 C10 C2 C 0 1 Y N N 194.706 -315.874 695.087 5.436 -0.739 -2.144 C10 KU5 2 KU5 C11 C3 C 0 1 Y N N 193.702 -314.937 695.186 6.103 -0.194 -1.063 C11 KU5 3 KU5 C12 C4 C 0 1 Y N N 192.695 -314.905 694.249 5.699 -0.496 0.224 C12 KU5 4 KU5 C13 C5 C 0 1 Y N N 192.685 -315.806 693.199 4.626 -1.344 0.430 C13 KU5 5 KU5 C14 C6 C 0 1 N N S 193.621 -310.757 692.042 -4.285 2.190 -0.178 C14 KU5 6 KU5 C15 C7 C 0 1 N N N 192.691 -310.447 693.224 -5.109 2.717 -1.372 C15 KU5 7 KU5 C16 C8 C 0 1 N N N 191.958 -311.770 693.386 -4.136 3.718 -2.050 C16 KU5 8 KU5 C17 C9 C 0 1 N N N 191.606 -312.122 691.955 -2.770 3.020 -1.833 C17 KU5 9 KU5 C18 C10 C 0 1 N N N 192.839 -311.571 689.842 -1.826 2.103 0.305 C18 KU5 10 KU5 C19 C11 C 0 1 N N N 191.999 -312.559 689.058 -0.417 2.385 -0.149 C19 KU5 11 KU5 C2 C12 C 0 1 N N N 196.111 -313.476 692.145 -3.691 -1.430 0.152 C2 KU5 12 KU5 C20 C13 C 0 1 Y N N 193.909 -312.988 686.948 2.316 2.266 0.440 C20 KU5 13 KU5 C21 C14 C 0 1 Y N N 194.582 -313.811 687.852 2.389 2.841 -0.822 C21 KU5 14 KU5 C22 C15 C 0 1 Y N N 195.878 -314.218 687.582 3.619 3.153 -1.367 C22 KU5 15 KU5 C23 C16 C 0 1 Y N N 196.511 -313.814 686.428 4.777 2.895 -0.658 C23 KU5 16 KU5 C24 C17 C 0 1 Y N N 195.861 -313.004 685.525 4.710 2.322 0.599 C24 KU5 17 KU5 C25 C18 C 0 1 Y N N 194.567 -312.596 685.785 3.483 2.012 1.153 C25 KU5 18 KU5 C3 C19 C 0 1 N N N 197.037 -313.049 693.048 -4.960 -1.952 0.346 C3 KU5 19 KU5 C4 C20 C 0 1 N N N 196.878 -311.818 693.678 -6.088 -1.012 0.374 C4 KU5 20 KU5 C5 C21 C 0 1 N N N 196.279 -314.807 691.458 -2.513 -2.326 0.113 C5 KU5 21 KU5 C6 C22 C 0 1 N N N 195.237 -316.473 690.012 -0.116 -2.701 -0.115 C6 KU5 22 KU5 C7 C23 C 0 1 N N N 195.238 -317.677 690.932 1.149 -1.871 -0.341 C7 KU5 23 KU5 C8 C24 C 0 1 Y N N 193.698 -316.744 693.099 3.959 -1.889 -0.651 C8 KU5 24 KU5 C9 C25 C 0 1 Y N N 194.710 -316.783 694.043 4.360 -1.582 -1.938 C9 KU5 25 KU5 N1 N1 N 0 1 N N N 195.756 -311.091 693.338 -5.822 0.301 0.199 N1 KU5 26 KU5 N2 N2 N 0 1 N N N 195.028 -312.746 691.835 -3.538 -0.103 -0.007 N2 KU5 27 KU5 N3 N3 N 0 1 N N N 195.245 -315.203 690.719 -1.282 -1.813 -0.077 N3 KU5 28 KU5 N4 N4 N 0 1 N N N 192.690 -311.506 691.177 -2.867 2.409 -0.495 N4 KU5 29 KU5 O1 O1 O 0 1 N N N 197.678 -311.361 694.508 -7.229 -1.405 0.541 O1 KU5 30 KU5 O2 O2 O 0 1 N N N 198.124 -313.753 693.389 -5.154 -3.285 0.504 O2 KU5 31 KU5 O3 O3 O 0 1 N N N 197.320 -315.455 691.571 -2.658 -3.525 0.252 O3 KU5 32 KU5 O4 O4 O 0 1 N N N 193.641 -310.845 689.265 -2.024 1.601 1.391 O4 KU5 33 KU5 O5 O5 O 0 1 N N N 193.689 -319.222 692.349 2.832 -3.533 0.894 O5 KU5 34 KU5 O6 O6 O 0 1 N N N 192.632 -317.557 690.869 2.560 -3.784 -1.552 O6 KU5 35 KU5 S1 S1 S 0 1 N N N 193.691 -317.909 691.771 2.592 -2.969 -0.388 S1 KU5 36 KU5 S2 S2 S 0 1 N N N 192.252 -312.458 687.260 0.749 1.865 1.139 S2 KU5 37 KU5 CL1 CL1 CL 0 0 N N N 193.777 -311.575 684.631 3.398 1.294 2.731 CL1 KU5 38 KU5 H1 H1 H 0 1 N N N 195.493 -315.900 695.826 5.752 -0.503 -3.149 H1 KU5 39 KU5 H2 H2 H 0 1 N N N 193.705 -314.227 696.000 6.941 0.469 -1.224 H2 KU5 40 KU5 H3 H3 H 0 1 N N N 191.907 -314.171 694.334 6.221 -0.071 1.068 H3 KU5 41 KU5 H4 H4 H 0 1 N N N 191.894 -315.778 692.464 4.310 -1.580 1.435 H4 KU5 42 KU5 H5 H5 H 0 1 N N N 193.924 -309.818 691.556 -4.554 2.735 0.727 H5 KU5 43 KU5 H6 H6 H 0 1 N N N 193.262 -310.190 694.128 -5.363 1.905 -2.054 H6 KU5 44 KU5 H7 H7 H 0 1 N N N 191.996 -309.629 692.985 -6.008 3.226 -1.026 H7 KU5 45 KU5 H8 H8 H 0 1 N N N 191.054 -311.652 694.001 -4.359 3.821 -3.112 H8 KU5 46 KU5 H9 H9 H 0 1 N N N 192.610 -312.534 693.835 -4.164 4.687 -1.552 H9 KU5 47 KU5 H10 H10 H 0 1 N N N 190.630 -311.699 691.674 -2.613 2.252 -2.591 H10 KU5 48 KU5 H11 H11 H 0 1 N N N 191.588 -313.212 691.811 -1.962 3.751 -1.861 H11 KU5 49 KU5 H12 H12 H 0 1 N N N 190.938 -312.361 689.272 -0.215 1.833 -1.067 H12 KU5 50 KU5 H13 H13 H 0 1 N N N 192.257 -313.576 689.390 -0.302 3.453 -0.335 H13 KU5 51 KU5 H14 H14 H 0 1 N N N 194.093 -314.130 688.761 1.485 3.043 -1.377 H14 KU5 52 KU5 H15 H15 H 0 1 N N N 196.396 -314.857 688.282 3.676 3.600 -2.349 H15 KU5 53 KU5 H16 H16 H 0 1 N N N 197.523 -314.135 686.230 5.738 3.140 -1.087 H16 KU5 54 KU5 H17 H17 H 0 1 N N N 196.359 -312.690 684.620 5.616 2.125 1.152 H17 KU5 55 KU5 H18 H18 H 0 1 N N N 194.335 -316.516 689.383 -0.232 -3.416 -0.929 H18 KU5 56 KU5 H19 H19 H 0 1 N N N 196.132 -316.522 689.374 -0.036 -3.236 0.831 H19 KU5 57 KU5 H20 H20 H 0 1 N N N 195.451 -318.575 690.334 1.069 -1.336 -1.287 H20 KU5 58 KU5 H21 H21 H 0 1 N N N 196.029 -317.542 691.685 1.264 -1.155 0.473 H21 KU5 59 KU5 H22 H22 H 0 1 N N N 195.498 -317.518 693.965 3.838 -2.008 -2.782 H22 KU5 60 KU5 H23 H23 H 0 1 N N N 195.600 -310.203 693.770 -6.546 0.947 0.205 H23 KU5 61 KU5 H24 H24 H 0 1 N N N 194.446 -314.606 690.648 -1.167 -0.857 -0.188 H24 KU5 62 KU5 H25 H25 H 0 1 N N N 198.167 -314.544 692.865 -6.079 -3.535 0.633 H25 KU5 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KU5 CL1 C25 SING N N 1 KU5 C24 C25 DOUB Y N 2 KU5 C24 C23 SING Y N 3 KU5 C25 C20 SING Y N 4 KU5 C23 C22 DOUB Y N 5 KU5 C20 S2 SING N N 6 KU5 C20 C21 DOUB Y N 7 KU5 S2 C19 SING N N 8 KU5 C22 C21 SING Y N 9 KU5 C19 C18 SING N N 10 KU5 O4 C18 DOUB N N 11 KU5 C18 N4 SING N N 12 KU5 C6 N3 SING N N 13 KU5 C6 C7 SING N N 14 KU5 N3 C5 SING N N 15 KU5 O6 S1 DOUB N N 16 KU5 C7 S1 SING N N 17 KU5 N4 C17 SING N N 18 KU5 N4 C14 SING N N 19 KU5 C5 O3 DOUB N N 20 KU5 C5 C2 SING N N 21 KU5 S1 O5 DOUB N N 22 KU5 S1 C8 SING N N 23 KU5 N2 C2 SING N N 24 KU5 N2 C1 DOUB N N 25 KU5 C17 C16 SING N N 26 KU5 C14 C1 SING N N 27 KU5 C14 C15 SING N N 28 KU5 C2 C3 DOUB N N 29 KU5 C1 N1 SING N N 30 KU5 C3 O2 SING N N 31 KU5 C3 C4 SING N N 32 KU5 C8 C13 DOUB Y N 33 KU5 C8 C9 SING Y N 34 KU5 C13 C12 SING Y N 35 KU5 C15 C16 SING N N 36 KU5 N1 C4 SING N N 37 KU5 C4 O1 DOUB N N 38 KU5 C9 C10 DOUB Y N 39 KU5 C12 C11 DOUB Y N 40 KU5 C10 C11 SING Y N 41 KU5 C10 H1 SING N N 42 KU5 C11 H2 SING N N 43 KU5 C12 H3 SING N N 44 KU5 C13 H4 SING N N 45 KU5 C14 H5 SING N N 46 KU5 C15 H6 SING N N 47 KU5 C15 H7 SING N N 48 KU5 C16 H8 SING N N 49 KU5 C16 H9 SING N N 50 KU5 C17 H10 SING N N 51 KU5 C17 H11 SING N N 52 KU5 C19 H12 SING N N 53 KU5 C19 H13 SING N N 54 KU5 C21 H14 SING N N 55 KU5 C22 H15 SING N N 56 KU5 C23 H16 SING N N 57 KU5 C24 H17 SING N N 58 KU5 C6 H18 SING N N 59 KU5 C6 H19 SING N N 60 KU5 C7 H20 SING N N 61 KU5 C7 H21 SING N N 62 KU5 C9 H22 SING N N 63 KU5 N1 H23 SING N N 64 KU5 N3 H24 SING N N 65 KU5 O2 H25 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KU5 SMILES ACDLabs 12.01 "C=2(NC(C(=C(C(=O)NCCS(c1ccccc1)(=O)=O)N=2)O)=O)C3CCCN3C(CSc4ccccc4Cl)=O" KU5 InChI InChI 1.03 "InChI=1S/C25H25ClN4O6S2/c26-17-9-4-5-11-19(17)37-15-20(31)30-13-6-10-18(30)23-28-21(22(32)25(34)29-23)24(33)27-12-14-38(35,36)16-7-2-1-3-8-16/h1-5,7-9,11,18,32H,6,10,12-15H2,(H,27,33)(H,28,29,34)/t18-/m0/s1" KU5 InChIKey InChI 1.03 QBUADGUVTJBDDK-SFHVURJKSA-N KU5 SMILES_CANONICAL CACTVS 3.385 "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NCC[S](=O)(=O)c4ccccc4" KU5 SMILES CACTVS 3.385 "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NCC[S](=O)(=O)c4ccccc4" KU5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)S(=O)(=O)CCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)CSc4ccccc4Cl)O" KU5 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)S(=O)(=O)CCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)CSc4ccccc4Cl)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KU5 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-[2-(phenylsulfonyl)ethyl]-1,6-dihydropyrimidine-4-carboxamide" KU5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(2~{S})-1-[2-(2-chlorophenyl)sulfanylethanoyl]pyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-[2-(phenylsulfonyl)ethyl]-1~{H}-pyrimidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KU5 "Create component" 2017-07-11 RCSB KU5 "Initial release" 2018-01-03 RCSB KU5 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KU5 _pdbx_chem_comp_synonyms.name SRI-30024 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##