data_L2X # _chem_comp.id L2X _chem_comp.name "(2S,3S)-N3-[2-(4-hydroxyphenyl)ethyl]-N2-[(2S)-1-oxidanylidene-3-phenyl-1-[(phenylmethyl)amino]propan-2-yl]oxirane-2,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H29 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S,3S)-2-N-[(1S)-1-(benzylcarbamoyl)-2-phenylethyl]-3-N-[2-(4-hydroxyphenyl)ethyl]oxirane-2,3-dicarboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-14 _chem_comp.pdbx_modified_date 2023-06-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 487.547 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L2X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A4U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L2X N1 N1 N 0 1 N N N 15.795 -22.437 0.804 -1.124 -0.827 -0.393 N1 L2X 1 L2X C4 C1 C 0 1 Y N N 20.119 -23.395 0.483 -1.586 -3.034 1.776 C4 L2X 2 L2X C5 C2 C 0 1 Y N N 21.308 -24.106 0.419 -1.449 -4.404 1.895 C5 L2X 3 L2X C6 C3 C 0 1 N N N 18.110 -22.545 1.730 -2.940 -0.999 1.237 C6 L2X 4 L2X C7 C4 C 0 1 N N S 16.993 -23.252 0.941 -2.549 -0.562 -0.176 C7 L2X 5 L2X C8 C5 C 0 1 N N N 16.689 -24.616 1.570 -2.816 0.912 -0.339 C8 L2X 6 L2X C10 C6 C 0 1 Y N N 15.885 -27.872 0.043 -5.792 3.097 -0.120 C10 L2X 7 L2X C13 C7 C 0 1 Y N N 15.010 -29.233 -2.227 -8.480 3.596 0.288 C13 L2X 8 L2X C15 C8 C 0 1 Y N N 14.611 -27.663 -0.469 -6.256 3.388 1.149 C15 L2X 9 L2X C17 C9 C 0 1 N N S 13.748 -21.742 -0.399 0.746 -2.317 -1.024 C17 L2X 10 L2X C20 C10 C 0 1 N N N 11.234 -17.570 0.615 4.644 0.048 -0.770 C20 L2X 11 L2X C21 C11 C 0 1 N N N 12.325 -16.667 1.157 4.757 1.041 0.389 C21 L2X 12 L2X C22 C12 C 0 1 Y N N 12.529 -16.839 2.644 6.203 1.412 0.593 C22 L2X 13 L2X C24 C13 C 0 1 Y N N 12.015 -16.201 4.922 8.318 1.007 1.640 C24 L2X 14 L2X C26 C14 C 0 1 Y N N 13.599 -17.952 4.502 8.065 2.836 0.105 C26 L2X 15 L2X N N2 N 0 1 N N N 16.716 -25.671 0.749 -4.067 1.391 -0.184 N L2X 16 L2X C C15 C 0 1 Y N N 21.803 -24.741 1.541 -2.515 -5.234 1.599 C L2X 17 L2X O O1 O 0 1 N N N 16.457 -24.704 2.770 -1.906 1.667 -0.609 O L2X 18 L2X C1 C16 C 0 1 Y N N 21.116 -24.645 2.733 -3.717 -4.693 1.184 C1 L2X 19 L2X C11 C17 C 0 1 Y N N 16.701 -28.794 -0.587 -6.671 3.061 -1.186 C11 L2X 20 L2X C12 C18 C 0 1 Y N N 16.265 -29.467 -1.717 -8.015 3.311 -0.982 C12 L2X 21 L2X C14 C19 C 0 1 Y N N 14.181 -28.337 -1.601 -7.601 3.637 1.353 C14 L2X 22 L2X C16 C20 C 0 1 N N N 14.995 -22.592 -0.260 -0.720 -2.045 -0.802 C16 L2X 23 L2X C18 C21 C 0 1 N N S 13.443 -20.583 0.465 1.451 -1.553 -2.146 C18 L2X 24 L2X C19 C22 C 0 1 N N N 12.701 -19.387 -0.125 2.897 -1.181 -1.942 C19 L2X 25 L2X C2 C23 C 0 1 Y N N 19.936 -23.919 2.804 -3.854 -3.322 1.065 C2 L2X 26 L2X C23 C24 C 0 1 Y N N 11.838 -16.048 3.557 6.992 0.668 1.451 C23 L2X 27 L2X C25 C25 C 0 1 Y N N 12.902 -17.153 5.399 8.857 2.095 0.969 C25 L2X 28 L2X C27 C26 C 0 1 Y N N 13.411 -17.791 3.139 6.740 2.493 -0.081 C27 L2X 29 L2X C3 C27 C 0 1 Y N N 19.418 -23.297 1.673 -2.789 -2.493 1.361 C3 L2X 30 L2X C9 C28 C 0 1 N N N 16.402 -27.027 1.181 -4.326 2.824 -0.342 C9 L2X 31 L2X N2 N3 N 0 1 N N N 11.654 -18.962 0.594 3.239 -0.313 -0.969 N2 L2X 32 L2X O1 O2 O 0 1 N N N 15.218 -23.397 -1.151 -1.535 -2.923 -0.992 O1 L2X 33 L2X O2 O3 O 0 1 N N N 12.733 -21.823 0.614 1.128 -2.941 -2.252 O2 L2X 34 L2X O3 O4 O 0 1 N N N 13.047 -18.891 -1.213 3.753 -1.663 -2.653 O3 L2X 35 L2X O4 O5 O 0 1 N N N 13.115 -17.286 6.741 10.160 2.434 1.158 O4 L2X 36 L2X H18 H1 H 0 1 N N N 15.568 -21.760 1.505 -0.473 -0.123 -0.245 H18 L2X 37 L2X H6 H2 H 0 1 N N N 19.736 -22.913 -0.404 -0.755 -2.385 2.011 H6 L2X 38 L2X H7 H3 H 0 1 N N N 21.850 -24.163 -0.513 -0.510 -4.827 2.219 H7 L2X 39 L2X H9 H4 H 0 1 N N N 18.261 -21.541 1.307 -2.292 -0.506 1.962 H9 L2X 40 L2X H8 H5 H 0 1 N N N 17.799 -22.457 2.781 -3.977 -0.721 1.429 H8 L2X 41 L2X H H6 H 0 1 N N N 17.387 -23.445 -0.068 -3.137 -1.120 -0.905 H L2X 42 L2X H15 H7 H 0 1 N N N 14.679 -29.751 -3.115 -9.531 3.792 0.447 H15 L2X 43 L2X H17 H8 H 0 1 N N N 13.947 -26.966 0.021 -5.569 3.420 1.981 H17 L2X 44 L2X H1 H9 H 0 1 N N N 13.379 -21.655 -1.431 1.323 -2.556 -0.131 H1 L2X 45 L2X H20 H10 H 0 1 N N N 10.987 -17.256 -0.410 5.034 0.505 -1.679 H20 L2X 46 L2X H21 H11 H 0 1 N N N 10.343 -17.475 1.253 5.220 -0.848 -0.538 H21 L2X 47 L2X H22 H12 H 0 1 N N N 13.268 -16.903 0.641 4.181 1.936 0.157 H22 L2X 48 L2X H23 H13 H 0 1 N N N 12.050 -15.621 0.957 4.367 0.583 1.298 H23 L2X 49 L2X H25 H14 H 0 1 N N N 11.463 -15.580 5.613 8.933 0.428 2.314 H25 L2X 50 L2X H26 H15 H 0 1 N N N 14.288 -18.699 4.867 8.483 3.683 -0.419 H26 L2X 51 L2X H10 H16 H 0 1 N N N 16.964 -25.522 -0.208 -4.794 0.787 0.031 H10 L2X 52 L2X H3 H17 H 0 1 N N N 22.720 -25.308 1.485 -2.408 -6.304 1.692 H3 L2X 53 L2X H4 H18 H 0 1 N N N 21.498 -25.137 3.615 -4.550 -5.341 0.953 H4 L2X 54 L2X H13 H19 H 0 1 N N N 17.688 -28.991 -0.194 -6.308 2.838 -2.178 H13 L2X 55 L2X H14 H20 H 0 1 N N N 16.916 -30.180 -2.201 -8.703 3.279 -1.815 H14 L2X 56 L2X H16 H21 H 0 1 N N N 13.190 -28.156 -1.991 -7.964 3.860 2.345 H16 L2X 57 L2X H2 H22 H 0 1 N N N 14.191 -20.340 1.234 0.859 -0.848 -2.730 H2 L2X 58 L2X H5 H23 H 0 1 N N N 19.415 -23.836 3.746 -4.794 -2.900 0.741 H5 L2X 59 L2X H24 H24 H 0 1 N N N 11.150 -15.299 3.194 6.572 -0.179 1.973 H24 L2X 60 L2X H27 H25 H 0 1 N N N 13.959 -18.416 2.450 6.122 3.070 -0.754 H27 L2X 61 L2X H11 H26 H 0 1 N N N 15.635 -26.981 1.968 -4.048 3.135 -1.349 H11 L2X 62 L2X H12 H27 H 0 1 N N N 17.313 -27.492 1.584 -3.739 3.383 0.386 H12 L2X 63 L2X H19 H28 H 0 1 N N N 11.142 -19.627 1.137 2.554 0.072 -0.400 H19 L2X 64 L2X H28 H29 H 0 1 N N N 12.565 -16.671 7.212 10.771 2.003 0.545 H28 L2X 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L2X C13 C12 DOUB Y N 1 L2X C13 C14 SING Y N 2 L2X C12 C11 SING Y N 3 L2X C14 C15 DOUB Y N 4 L2X O3 C19 DOUB N N 5 L2X O1 C16 DOUB N N 6 L2X C11 C10 DOUB Y N 7 L2X C15 C10 SING Y N 8 L2X C17 C16 SING N N 9 L2X C17 C18 SING N N 10 L2X C17 O2 SING N N 11 L2X C16 N1 SING N N 12 L2X C19 C18 SING N N 13 L2X C19 N2 SING N N 14 L2X C10 C9 SING N N 15 L2X C5 C4 DOUB Y N 16 L2X C5 C SING Y N 17 L2X C18 O2 SING N N 18 L2X C4 C3 SING Y N 19 L2X N2 C20 SING N N 20 L2X C20 C21 SING N N 21 L2X N C9 SING N N 22 L2X N C8 SING N N 23 L2X N1 C7 SING N N 24 L2X C7 C8 SING N N 25 L2X C7 C6 SING N N 26 L2X C21 C22 SING N N 27 L2X C C1 DOUB Y N 28 L2X C8 O DOUB N N 29 L2X C3 C6 SING N N 30 L2X C3 C2 DOUB Y N 31 L2X C22 C27 DOUB Y N 32 L2X C22 C23 SING Y N 33 L2X C1 C2 SING Y N 34 L2X C27 C26 SING Y N 35 L2X C23 C24 DOUB Y N 36 L2X C26 C25 DOUB Y N 37 L2X C24 C25 SING Y N 38 L2X C25 O4 SING N N 39 L2X N1 H18 SING N N 40 L2X C4 H6 SING N N 41 L2X C5 H7 SING N N 42 L2X C6 H9 SING N N 43 L2X C6 H8 SING N N 44 L2X C7 H SING N N 45 L2X C13 H15 SING N N 46 L2X C15 H17 SING N N 47 L2X C17 H1 SING N N 48 L2X C20 H20 SING N N 49 L2X C20 H21 SING N N 50 L2X C21 H22 SING N N 51 L2X C21 H23 SING N N 52 L2X C24 H25 SING N N 53 L2X C26 H26 SING N N 54 L2X N H10 SING N N 55 L2X C H3 SING N N 56 L2X C1 H4 SING N N 57 L2X C11 H13 SING N N 58 L2X C12 H14 SING N N 59 L2X C14 H16 SING N N 60 L2X C18 H2 SING N N 61 L2X C2 H5 SING N N 62 L2X C23 H24 SING N N 63 L2X C27 H27 SING N N 64 L2X C9 H11 SING N N 65 L2X C9 H12 SING N N 66 L2X N2 H19 SING N N 67 L2X O4 H28 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L2X InChI InChI 1.06 "InChI=1S/C28H29N3O5/c32-22-13-11-19(12-14-22)15-16-29-27(34)24-25(36-24)28(35)31-23(17-20-7-3-1-4-8-20)26(33)30-18-21-9-5-2-6-10-21/h1-14,23-25,32H,15-18H2,(H,29,34)(H,30,33)(H,31,35)/t23-,24-,25-/m0/s1" L2X InChIKey InChI 1.06 ZMZQYVMNDRBKLO-SDHOMARFSA-N L2X SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(CCNC(=O)[C@H]2O[C@@H]2C(=O)N[C@@H](Cc3ccccc3)C(=O)NCc4ccccc4)cc1" L2X SMILES CACTVS 3.385 "Oc1ccc(CCNC(=O)[CH]2O[CH]2C(=O)N[CH](Cc3ccccc3)C(=O)NCc4ccccc4)cc1" L2X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](C(=O)NCc2ccccc2)NC(=O)[C@@H]3[C@H](O3)C(=O)NCCc4ccc(cc4)O" L2X SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)NCc2ccccc2)NC(=O)C3C(O3)C(=O)NCCc4ccc(cc4)O" # _pdbx_chem_comp_identifier.comp_id L2X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S})-~{N}3-[2-(4-hydroxyphenyl)ethyl]-~{N}2-[(2~{S})-1-oxidanylidene-3-phenyl-1-[(phenylmethyl)amino]propan-2-yl]oxirane-2,3-dicarboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id L2X _pdbx_chem_comp_synonyms.name "(2S,3S)-2-N-[(1S)-1-(benzylcarbamoyl)-2-phenylethyl]-3-N-[2-(4-hydroxyphenyl)ethyl]oxirane-2,3-dicarboxamide" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L2X "Create component" 2022-06-14 PDBE L2X "Modify name" 2022-06-14 PDBE L2X "Modify descriptor" 2022-08-22 RCSB L2X "Initial release" 2023-07-05 RCSB #