data_L3W # _chem_comp.id L3W _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[[(1~{E},3~{Z})-5-azanyl-4-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-methanoyl-amino]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H29 N7 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 697.440 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L3W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SAQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L3W C1 C1 C 0 1 Y N N 25.861 -8.698 -26.136 -9.175 3.594 -0.992 C1 L3W 1 L3W C3 C2 C 0 1 Y N N 26.150 -10.008 -24.266 -9.114 2.096 -2.747 C3 L3W 2 L3W N6 N1 N 0 1 Y N N 26.125 -9.632 -27.058 -8.247 2.948 -0.319 N6 L3W 3 L3W C8 C3 C 0 1 Y N N 26.944 -12.886 -26.070 -6.606 0.002 -1.340 C8 L3W 4 L3W C10 C4 C 0 1 N N R 26.851 -12.247 -28.498 -6.001 1.033 0.882 C10 L3W 5 L3W C12 C5 C 0 1 N N R 28.295 -12.413 -28.916 -6.784 0.325 2.017 C12 L3W 6 L3W C14 C6 C 0 1 N N S 28.173 -13.320 -30.125 -5.654 -0.052 3.006 C14 L3W 7 L3W C16 C7 C 0 1 N N R 26.995 -14.215 -29.776 -4.376 -0.031 2.144 C16 L3W 8 L3W C19 C8 C 0 1 N N N 27.451 -15.547 -29.196 -3.699 -1.402 2.185 C19 L3W 9 L3W O28 O1 O 0 1 N N N 30.713 -18.572 -30.428 2.103 -2.153 -0.821 O28 L3W 10 L3W C30 C9 C 0 1 N N R 30.126 -20.842 -30.883 4.294 -1.528 -1.628 C30 L3W 11 L3W C32 C10 C 0 1 N N S 30.283 -22.298 -30.488 5.508 -2.011 -2.452 C32 L3W 12 L3W C34 C11 C 0 1 N N R 30.402 -23.054 -31.824 6.717 -1.329 -1.775 C34 L3W 13 L3W N2 N2 N 0 1 Y N N 25.855 -8.820 -24.805 -9.606 3.189 -2.172 N2 L3W 14 L3W C4 C12 C 0 1 Y N N 26.441 -11.063 -25.113 -8.125 1.369 -2.064 C4 L3W 15 L3W C5 C13 C 0 1 Y N N 26.417 -10.796 -26.475 -7.700 1.841 -0.811 C5 L3W 16 L3W N7 N3 N 0 1 Y N N 26.730 -11.981 -27.082 -6.742 0.959 -0.379 N7 L3W 17 L3W N9 N4 N 0 1 Y N N 26.783 -12.369 -24.871 -7.418 0.243 -2.327 N9 L3W 18 L3W O18 O2 O 0 1 N N N 26.230 -13.489 -28.820 -4.772 0.280 0.796 O18 L3W 19 L3W O20 O3 O 0 1 N N N 28.335 -15.322 -28.099 -2.457 -1.342 1.480 O20 L3W 20 L3W P21 P1 P 0 1 N N N 29.089 -16.548 -27.319 -1.476 -2.608 1.322 P21 L3W 21 L3W O22 O4 O 0 1 N N N 30.198 -15.966 -26.490 -0.916 -3.037 2.770 O22 L3W 22 L3W O23 O5 O 0 1 N N N 28.043 -17.447 -26.712 -2.222 -3.740 0.727 O23 L3W 23 L3W O24 O6 O 0 1 N N N 29.721 -17.449 -28.516 -0.243 -2.216 0.365 O24 L3W 24 L3W P25 P2 P 0 1 N N N 31.018 -17.282 -29.480 0.816 -3.066 -0.501 P25 L3W 25 L3W O26 O7 O 0 1 N N N 32.303 -17.558 -28.736 0.131 -3.530 -1.881 O26 L3W 26 L3W O27 O8 O 0 1 N N N 30.914 -16.014 -30.271 1.236 -4.259 0.268 O27 L3W 27 L3W C29 C14 C 0 1 N N N 30.801 -19.902 -29.902 3.266 -2.652 -1.484 C29 L3W 28 L3W C36 C15 C 0 1 N N R 30.793 -21.965 -32.836 6.091 -0.514 -0.621 C36 L3W 29 L3W O38 O9 O 0 1 N N N 30.825 -20.739 -32.104 4.840 -1.178 -0.338 O38 L3W 30 L3W N39 N5 N 0 1 N N N 32.112 -22.100 -33.561 6.962 -0.544 0.556 N39 L3W 31 L3W C40 C16 C 0 1 N N N 31.984 -22.530 -34.916 7.579 0.612 0.987 C40 L3W 32 L3W C41 C17 C 0 1 N N N 31.207 -21.913 -35.820 7.305 1.786 0.385 C41 L3W 33 L3W C42 C18 C 0 1 N N N 31.145 -22.272 -37.221 7.843 2.986 0.901 C42 L3W 34 L3W C43 C19 C 0 1 N N N 30.187 -21.900 -38.090 7.567 4.170 0.294 C43 L3W 35 L3W C44 C20 C 0 1 N N N 30.351 -22.303 -39.514 8.123 5.412 0.827 C44 L3W 36 L3W O45 O10 O 0 1 N N N 31.282 -22.982 -39.926 8.834 5.385 1.816 O45 L3W 37 L3W N46 N6 N 0 1 N N N 29.348 -21.819 -40.319 7.849 6.586 0.226 N46 L3W 38 L3W O47 O11 O 0 1 N N N 29.077 -21.173 -37.756 6.772 4.200 -0.811 O47 L3W 39 L3W C48 C21 C 0 1 N N N 33.104 -22.861 -32.806 7.162 -1.701 1.217 C48 L3W 40 L3W O49 O12 O 0 1 N N N 33.436 -22.478 -31.694 7.807 -1.709 2.244 O49 L3W 41 L3W O50 O13 O 0 1 N N N 29.122 -23.571 -32.175 7.385 -0.465 -2.696 O50 L3W 42 L3W O51 O14 O 0 1 N N N 29.099 -22.664 -29.810 5.390 -1.587 -3.812 O51 L3W 43 L3W O52 O15 O 0 1 N N N 27.799 -12.586 -31.279 -5.563 0.912 4.057 O52 L3W 44 L3W O53 O16 O 0 1 N N N 28.853 -11.144 -29.214 -7.718 1.219 2.627 O53 L3W 45 L3W N54 N7 N 0 1 N N N 26.163 -10.172 -22.888 -9.573 1.679 -3.984 N54 L3W 46 L3W H1 H1 H 0 1 N N N 25.621 -7.717 -26.518 -9.602 4.488 -0.561 H1 L3W 47 L3W H2 H2 H 0 1 N N N 27.217 -13.917 -26.242 -5.924 -0.835 -1.289 H2 L3W 48 L3W H3 H3 H 0 1 N N N 26.398 -11.429 -29.077 -5.797 2.071 1.146 H3 L3W 49 L3W H4 H4 H 0 1 N N N 28.860 -12.922 -28.121 -7.288 -0.566 1.645 H4 L3W 50 L3W H5 H5 H 0 1 N N N 29.089 -13.910 -30.274 -5.823 -1.048 3.414 H5 L3W 51 L3W H6 H6 H 0 1 N N N 26.402 -14.401 -30.683 -3.692 0.732 2.514 H6 L3W 52 L3W H7 H7 H 0 1 N N N 26.574 -16.112 -28.848 -3.514 -1.685 3.222 H7 L3W 53 L3W H8 H8 H 0 1 N N N 27.974 -16.123 -29.973 -4.347 -2.143 1.717 H8 L3W 54 L3W H9 H9 H 0 1 N N N 29.062 -20.585 -30.992 3.838 -0.656 -2.098 H9 L3W 55 L3W H10 H10 H 0 1 N N N 31.185 -22.446 -29.876 5.599 -3.096 -2.398 H10 L3W 56 L3W H11 H11 H 0 1 N N N 31.175 -23.835 -31.767 7.407 -2.076 -1.384 H11 L3W 57 L3W H12 H12 H 0 1 N N N 30.108 -16.257 -25.590 -0.415 -2.343 3.219 H12 L3W 58 L3W H13 H13 H 0 1 N N N 32.912 -16.843 -28.879 -0.170 -2.798 -2.437 H13 L3W 59 L3W H14 H14 H 0 1 N N N 30.293 -19.952 -28.928 3.697 -3.465 -0.900 H14 L3W 60 L3W H15 H15 H 0 1 N N N 31.857 -20.186 -29.780 2.990 -3.021 -2.472 H15 L3W 61 L3W H16 H16 H 0 1 N N N 29.995 -21.911 -33.591 5.912 0.514 -0.936 H16 L3W 62 L3W H17 H17 H 0 1 N N N 32.543 -23.399 -35.231 8.281 0.576 1.806 H17 L3W 63 L3W H18 H18 H 0 1 N N N 30.588 -21.096 -35.480 6.675 1.810 -0.492 H18 L3W 64 L3W H19 H19 H 0 1 N N N 31.940 -22.895 -37.604 8.473 2.962 1.777 H19 L3W 65 L3W H20 H20 H 0 1 N N N 29.354 -22.017 -41.299 7.283 6.608 -0.562 H20 L3W 66 L3W H21 H21 H 0 1 N N N 28.612 -21.269 -39.925 8.218 7.411 0.580 H21 L3W 67 L3W H22 H22 H 0 1 N N N 29.091 -20.981 -36.826 6.633 5.086 -1.172 H22 L3W 68 L3W H23 H23 H 0 1 N N N 33.540 -23.755 -33.227 6.747 -2.621 0.833 H23 L3W 69 L3W H24 H24 H 0 1 N N N 28.871 -24.245 -31.555 7.746 -0.919 -3.470 H24 L3W 70 L3W H25 H25 H 0 1 N N N 29.043 -22.188 -28.990 6.126 -1.863 -4.375 H25 L3W 71 L3W H26 H26 H 0 1 N N N 28.511 -12.010 -31.533 -6.340 0.942 4.631 H26 L3W 72 L3W H27 H27 H 0 1 N N N 28.903 -10.625 -28.420 -8.232 0.822 3.343 H27 L3W 73 L3W H28 H28 H 0 1 N N N 25.930 -9.305 -22.447 -10.262 2.186 -4.442 H28 L3W 74 L3W H29 H29 H 0 1 N N N 25.494 -10.868 -22.629 -9.206 0.880 -4.393 H29 L3W 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L3W N46 C44 SING N N 1 L3W O45 C44 DOUB N N 2 L3W C44 C43 SING N N 3 L3W C43 O47 SING N N 4 L3W C43 C42 DOUB N Z 5 L3W C42 C41 SING N N 6 L3W C41 C40 DOUB N E 7 L3W C40 N39 SING N N 8 L3W N39 C36 SING N N 9 L3W N39 C48 SING N N 10 L3W C36 O38 SING N N 11 L3W C36 C34 SING N N 12 L3W C48 O49 DOUB N N 13 L3W O50 C34 SING N N 14 L3W O38 C30 SING N N 15 L3W C34 C32 SING N N 16 L3W O52 C14 SING N N 17 L3W C30 C32 SING N N 18 L3W C30 C29 SING N N 19 L3W C32 O51 SING N N 20 L3W O28 C29 SING N N 21 L3W O28 P25 SING N N 22 L3W O27 P25 DOUB N N 23 L3W C14 C16 SING N N 24 L3W C14 C12 SING N N 25 L3W C16 C19 SING N N 26 L3W C16 O18 SING N N 27 L3W P25 O26 SING N N 28 L3W P25 O24 SING N N 29 L3W O53 C12 SING N N 30 L3W C19 O20 SING N N 31 L3W C12 C10 SING N N 32 L3W O18 C10 SING N N 33 L3W O24 P21 SING N N 34 L3W C10 N7 SING N N 35 L3W O20 P21 SING N N 36 L3W P21 O23 DOUB N N 37 L3W P21 O22 SING N N 38 L3W N7 C5 SING Y N 39 L3W N7 C8 SING Y N 40 L3W N6 C5 DOUB Y N 41 L3W N6 C1 SING Y N 42 L3W C5 C4 SING Y N 43 L3W C1 N2 DOUB Y N 44 L3W C8 N9 DOUB Y N 45 L3W C4 N9 SING Y N 46 L3W C4 C3 DOUB Y N 47 L3W N2 C3 SING Y N 48 L3W C3 N54 SING N N 49 L3W C1 H1 SING N N 50 L3W C8 H2 SING N N 51 L3W C10 H3 SING N N 52 L3W C12 H4 SING N N 53 L3W C14 H5 SING N N 54 L3W C16 H6 SING N N 55 L3W C19 H7 SING N N 56 L3W C19 H8 SING N N 57 L3W C30 H9 SING N N 58 L3W C32 H10 SING N N 59 L3W C34 H11 SING N N 60 L3W O22 H12 SING N N 61 L3W O26 H13 SING N N 62 L3W C29 H14 SING N N 63 L3W C29 H15 SING N N 64 L3W C36 H16 SING N N 65 L3W C40 H17 SING N N 66 L3W C41 H18 SING N N 67 L3W C42 H19 SING N N 68 L3W N46 H20 SING N N 69 L3W N46 H21 SING N N 70 L3W O47 H22 SING N N 71 L3W C48 H23 SING N N 72 L3W O50 H24 SING N N 73 L3W O51 H25 SING N N 74 L3W O52 H26 SING N N 75 L3W O53 H27 SING N N 76 L3W N54 H28 SING N N 77 L3W N54 H29 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L3W InChI InChI 1.03 "InChI=1S/C21H29N7O16P2/c22-17-12-19(25-6-24-17)28(7-26-12)21-16(34)14(32)11(43-21)5-41-46(38,39)44-45(36,37)40-4-10-13(31)15(33)20(42-10)27(8-29)3-1-2-9(30)18(23)35/h1-3,6-8,10-11,13-16,20-21,30-34H,4-5H2,(H2,23,35)(H,36,37)(H,38,39)(H2,22,24,25)/b3-1+,9-2-/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1" L3W InChIKey InChI 1.03 QSTZUQWNOOUKGF-OTTADCDWSA-N L3W SMILES_CANONICAL CACTVS 3.385 "NC(=O)\C(O)=C\C=C\N(C=O)[C@@H]1O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@@H](O)[C@H]1O" L3W SMILES CACTVS 3.385 "NC(=O)C(O)=CC=CN(C=O)[CH]1O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH](O)[CH]1O" L3W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N(/C=C/C=C(/C(=O)N)\O)C=O)O)O)O)O)N" L3W SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N(C=CC=C(C(=O)N)O)C=O)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id L3W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[[(1~{E},3~{Z})-5-azanyl-4-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-methanoyl-amino]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L3W "Create component" 2019-07-18 EBI L3W "Initial release" 2020-07-22 RCSB ##