data_L5P # _chem_comp.id L5P _chem_comp.name "(2S)-2-azanyl-6-[[(3R,4R)-3,4-bis(oxidanyl)-2-oxidanylidene-5-phosphonooxy-pentyl]amino]hexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H23 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-11-17 _chem_comp.pdbx_modified_date 2018-12-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L5P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4WXY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L5P N N1 N 0 1 N N N 14.793 22.430 14.754 7.090 2.288 0.155 N L5P 1 L5P CA C1 C 0 1 N N S 14.146 23.107 15.859 7.371 0.872 0.426 CA L5P 2 L5P CB C2 C 0 1 N N N 13.894 24.562 15.506 6.275 0.006 -0.198 CB L5P 3 L5P CG C3 C 0 1 N N N 15.223 25.216 15.379 4.942 0.294 0.495 CG L5P 4 L5P CD C4 C 0 1 N N N 15.100 26.650 14.913 3.845 -0.572 -0.129 CD L5P 5 L5P CE C5 C 0 1 N N N 16.175 27.332 15.727 2.512 -0.284 0.564 CE L5P 6 L5P NZ N2 N 0 1 N N N 16.852 28.468 15.115 1.459 -1.115 -0.035 NZ L5P 7 L5P C1 C6 C 0 1 N N N 12.824 22.513 16.265 8.705 0.502 -0.171 C1 L5P 8 L5P O O1 O 0 1 N N N 12.055 22.076 15.410 9.185 1.183 -1.046 O L5P 9 L5P O4 O2 O 0 1 N N N 19.684 28.824 14.977 -0.591 -2.483 -0.930 O4 L5P 10 L5P C3 C7 C 0 1 N N N 18.965 29.600 15.589 -0.891 -1.734 -0.033 C3 L5P 11 L5P C2 C8 C 0 1 N N N 17.655 29.140 16.143 0.162 -0.865 0.607 C2 L5P 12 L5P C5 C9 C 0 1 N N R 19.353 31.017 15.844 -2.317 -1.666 0.449 C5 L5P 13 L5P O13 O3 O 0 1 N N N 18.296 31.690 16.523 -3.010 -2.852 0.054 O13 L5P 14 L5P C6 C10 C 0 1 N N R 19.572 31.711 14.534 -3.006 -0.446 -0.166 C6 L5P 15 L5P O14 O4 O 0 1 N N N 20.784 31.218 13.977 -2.313 0.740 0.229 O14 L5P 16 L5P C7 C11 C 0 1 N N N 19.715 33.194 14.746 -4.454 -0.377 0.323 C7 L5P 17 L5P O8 O5 O 0 1 N N N 20.162 33.661 13.506 -5.130 0.693 -0.340 O8 L5P 18 L5P P9 P1 P 0 1 N N N 19.989 35.163 13.098 -6.675 1.056 -0.068 P9 L5P 19 L5P O12 O6 O 0 1 N N N 21.131 35.811 13.777 -7.607 -0.162 -0.556 O12 L5P 20 L5P O11 O7 O 0 1 N N N 20.057 35.050 11.624 -6.880 1.285 1.380 O11 L5P 21 L5P O10 O8 O 0 1 N N N 18.666 35.643 13.560 -7.064 2.389 -0.882 O10 L5P 22 L5P H1 H1 H 0 1 N N N 14.954 21.473 14.997 7.765 2.884 0.612 H1 L5P 23 L5P H2 H2 H 0 1 N N N 14.205 22.474 13.946 7.062 2.468 -0.837 H2 L5P 24 L5P H4 H4 H 0 1 N N N 14.815 23.081 16.732 7.397 0.706 1.503 H4 L5P 25 L5P H5 H5 H 0 1 N N N 13.309 25.047 16.301 6.190 0.238 -1.260 H5 L5P 26 L5P H6 H6 H 0 1 N N N 13.347 24.630 14.554 6.529 -1.046 -0.075 H6 L5P 27 L5P H7 H7 H 0 1 N N N 15.828 24.655 14.651 5.027 0.063 1.557 H7 L5P 28 L5P H8 H8 H 0 1 N N N 15.722 25.201 16.359 4.688 1.347 0.372 H8 L5P 29 L5P H9 H9 H 0 1 N N N 15.297 26.739 13.834 3.760 -0.340 -1.191 H9 L5P 30 L5P H10 H10 H 0 1 N N N 14.105 27.061 15.139 4.099 -1.624 -0.006 H10 L5P 31 L5P H11 H11 H 0 1 N N N 15.710 27.686 16.659 2.597 -0.515 1.626 H11 L5P 32 L5P H12 H12 H 0 1 N N N 16.940 26.578 15.963 2.258 0.769 0.441 H12 L5P 33 L5P H13 H13 H 0 1 N N N 17.447 28.149 14.377 1.404 -0.966 -1.031 H13 L5P 34 L5P OXT HXT O 0 1 N Y N 12.550 22.470 17.309 9.358 -0.585 0.269 OXT L5P 35 L5P H16 H16 H 0 1 N N N 17.099 30.011 16.520 0.231 -1.100 1.669 H16 L5P 36 L5P H17 H17 H 0 1 N N N 17.841 28.438 16.969 -0.108 0.184 0.484 H17 L5P 37 L5P H18 H18 H 0 1 N N N 20.278 31.048 16.438 -2.331 -1.582 1.535 H18 L5P 38 L5P H19 H19 H 0 1 N N N 18.137 31.268 17.359 -3.037 -2.992 -0.903 H19 L5P 39 L5P H20 H20 H 0 1 N N N 18.724 31.513 13.862 -2.992 -0.530 -1.252 H20 L5P 40 L5P H21 H21 H 0 1 N N N 20.836 30.279 14.113 -2.286 0.880 1.186 H21 L5P 41 L5P H22 H22 H 0 1 N N N 20.451 33.409 15.535 -4.957 -1.318 0.100 H22 L5P 42 L5P H23 H23 H 0 1 N N N 18.749 33.648 15.012 -4.467 -0.205 1.399 H23 L5P 43 L5P H24 H24 H 0 1 N N N 21.776 36.074 13.131 -7.523 -0.369 -1.497 H24 L5P 44 L5P H25 H25 H 0 1 N N N 18.102 35.790 12.810 -7.983 2.668 -0.765 H25 L5P 45 L5P HXT H3 H 0 1 N Y N 11.693 22.070 17.396 10.210 -0.782 -0.144 HXT L5P 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L5P O11 P9 DOUB N N 1 L5P P9 O8 SING N N 2 L5P P9 O10 SING N N 3 L5P P9 O12 SING N N 4 L5P O8 C7 SING N N 5 L5P O14 C6 SING N N 6 L5P C6 C7 SING N N 7 L5P C6 C5 SING N N 8 L5P N CA SING N N 9 L5P CD CG SING N N 10 L5P CD CE SING N N 11 L5P O4 C3 DOUB N N 12 L5P NZ CE SING N N 13 L5P NZ C2 SING N N 14 L5P CG CB SING N N 15 L5P O C1 DOUB N N 16 L5P CB CA SING N N 17 L5P C3 C5 SING N N 18 L5P C3 C2 SING N N 19 L5P C5 O13 SING N N 20 L5P CA C1 SING N N 21 L5P N H1 SING N N 22 L5P N H2 SING N N 23 L5P CA H4 SING N N 24 L5P CB H5 SING N N 25 L5P CB H6 SING N N 26 L5P CG H7 SING N N 27 L5P CG H8 SING N N 28 L5P CD H9 SING N N 29 L5P CD H10 SING N N 30 L5P CE H11 SING N N 31 L5P CE H12 SING N N 32 L5P NZ H13 SING N N 33 L5P C1 OXT SING N N 34 L5P C2 H16 SING N N 35 L5P C2 H17 SING N N 36 L5P C5 H18 SING N N 37 L5P O13 H19 SING N N 38 L5P C6 H20 SING N N 39 L5P O14 H21 SING N N 40 L5P C7 H22 SING N N 41 L5P C7 H23 SING N N 42 L5P O12 H24 SING N N 43 L5P O10 H25 SING N N 44 L5P OXT HXT SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L5P SMILES ACDLabs 12.01 "NC(C(O)=O)CCCCNCC(=O)C(O)C(COP(O)(O)=O)O" L5P InChI InChI 1.03 "InChI=1S/C11H23N2O9P/c12-7(11(17)18)3-1-2-4-13-5-8(14)10(16)9(15)6-22-23(19,20)21/h7,9-10,13,15-16H,1-6,12H2,(H,17,18)(H2,19,20,21)/t7-,9+,10-/m0/s1" L5P InChIKey InChI 1.03 FCAUVIWDSGPTCC-SFGNSQDASA-N L5P SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNCC(=O)[C@H](O)[C@H](O)CO[P](O)(O)=O)C(O)=O" L5P SMILES CACTVS 3.385 "N[CH](CCCCNCC(=O)[CH](O)[CH](O)CO[P](O)(O)=O)C(O)=O" L5P SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(CCNCC(=O)[C@@H]([C@@H](COP(=O)(O)O)O)O)C[C@@H](C(=O)O)N" L5P SMILES "OpenEye OEToolkits" 1.7.6 "C(CCNCC(=O)C(C(COP(=O)(O)O)O)O)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier L5P "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-amino-6-{[(3R,4R)-3,4-dihydroxy-2-oxo-5-(phosphonooxy)pentyl]amino}hexanoic acid (non-preferred name)" L5P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-6-[[(3R,4R)-3,4-bis(oxidanyl)-2-oxidanylidene-5-phosphonooxy-pentyl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L5P "Create component" 2014-11-17 RCSB L5P "Initial release" 2015-01-14 RCSB #