data_LB9 # _chem_comp.id LB9 _chem_comp.name 5-azaniumylpentylazanium _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H16 N2" _chem_comp.mon_nstd_parent_comp_id N2P _chem_comp.pdbx_synonyms "cadaverine (protonated)" _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2022-06-29 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 104.194 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LB9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A71 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LB9 C1 C1 C 0 1 N N N 5.149 11.481 13.994 2.499 -0.514 0.002 C1 LB9 1 LB9 C2 C2 C 0 1 N N N 5.684 10.615 15.084 1.249 0.369 -0.001 C2 LB9 2 LB9 C3 C3 C 0 1 N N N 4.878 10.709 16.350 0.000 -0.514 0.002 C3 LB9 3 LB9 C4 C4 C 0 1 N N N 5.468 9.991 17.516 -1.249 0.369 -0.001 C4 LB9 4 LB9 NE2 N1 N 1 1 N N N 5.992 11.616 12.823 3.698 0.334 -0.001 NE2 LB9 5 LB9 C5 C5 C 0 1 N N N 4.742 10.269 18.801 -2.499 -0.514 0.002 C5 LB9 6 LB9 N1 N2 N 1 1 N N N 5.270 9.447 19.915 -3.698 0.334 -0.001 N1 LB9 7 LB9 H1C1 H1 H 0 0 N N N 4.987 12.486 14.411 2.499 -1.141 0.894 H1C1 LB9 8 LB9 H1C2 H2 H 0 0 N N N 4.186 11.059 13.670 2.499 -1.146 -0.886 H1C2 LB9 9 LB9 H2C1 H3 H 0 0 N N N 5.676 9.571 14.739 1.249 1.001 0.887 H2C1 LB9 10 LB9 H2C2 H4 H 0 0 N N N 6.718 10.922 15.302 1.249 0.996 -0.893 H2C2 LB9 11 LB9 H3C1 H5 H 0 0 N N N 4.779 11.772 16.616 0.000 -1.146 -0.886 H3C1 LB9 12 LB9 H3C2 H6 H 0 0 N N N 3.882 10.286 16.155 0.000 -1.141 0.894 H3C2 LB9 13 LB9 H4C1 H7 H 0 0 N N N 5.430 8.910 17.318 -1.249 1.001 0.887 H4C1 LB9 14 LB9 H4C2 H8 H 0 0 N N N 6.516 10.307 17.629 -1.249 0.996 -0.893 H4C2 LB9 15 LB9 HE21 H9 H 0 0 N N N 5.545 12.213 12.157 4.522 -0.249 0.001 HE21 LB9 16 LB9 HE22 H10 H 0 0 N N N 6.871 12.013 13.089 3.698 0.914 -0.827 HE22 LB9 17 LB9 H11 H11 H 0 1 N N N 6.143 10.715 12.415 3.698 0.919 0.821 H11 LB9 18 LB9 H5C1 H12 H 0 0 N N N 4.861 11.333 19.055 -2.499 -1.146 -0.886 H5C1 LB9 19 LB9 H5C2 H13 H 0 0 N N N 3.675 10.041 18.664 -2.499 -1.141 0.894 H5C2 LB9 20 LB9 H1N1 H14 H 0 0 N N N 4.766 9.657 20.753 -3.698 0.914 -0.827 H1N1 LB9 21 LB9 H1N2 H15 H 0 0 N N N 5.161 8.478 19.694 -4.522 -0.249 0.001 H1N2 LB9 22 LB9 H16 H16 H 0 1 N N N 6.240 9.652 20.050 -3.698 0.919 0.821 H16 LB9 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LB9 NE2 C1 SING N N 1 LB9 C1 C2 SING N N 2 LB9 C2 C3 SING N N 3 LB9 C3 C4 SING N N 4 LB9 C4 C5 SING N N 5 LB9 C5 N1 SING N N 6 LB9 C1 H1C1 SING N N 7 LB9 C1 H1C2 SING N N 8 LB9 C2 H2C1 SING N N 9 LB9 C2 H2C2 SING N N 10 LB9 C3 H3C1 SING N N 11 LB9 C3 H3C2 SING N N 12 LB9 C4 H4C1 SING N N 13 LB9 C4 H4C2 SING N N 14 LB9 NE2 HE21 SING N N 15 LB9 NE2 HE22 SING N N 16 LB9 NE2 H11 SING N N 17 LB9 C5 H5C1 SING N N 18 LB9 C5 H5C2 SING N N 19 LB9 N1 H1N1 SING N N 20 LB9 N1 H1N2 SING N N 21 LB9 N1 H16 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LB9 InChI InChI 1.06 InChI=1S/C5H14N2/c6-4-2-1-3-5-7/h1-7H2/p+2 LB9 InChIKey InChI 1.06 VHRGRCVQAFMJIZ-UHFFFAOYSA-P LB9 SMILES_CANONICAL CACTVS 3.385 "[NH3+]CCCCC[NH3+]" LB9 SMILES CACTVS 3.385 "[NH3+]CCCCC[NH3+]" LB9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC[NH3+])CC[NH3+]" LB9 SMILES "OpenEye OEToolkits" 2.0.7 "C(CC[NH3+])CC[NH3+]" # _pdbx_chem_comp_identifier.comp_id LB9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier 5-azaniumylpentylazanium # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LB9 _pdbx_chem_comp_synonyms.name "cadaverine (protonated)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LB9 "Create component" 2022-06-29 PDBE LB9 "Modify descriptor" 2022-08-22 RCSB LB9 "Initial release" 2023-02-22 RCSB #