data_LCG # _chem_comp.id LCG _chem_comp.name "[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H14 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-06-27 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 375.231 _chem_comp.one_letter_code G _chem_comp.three_letter_code LCG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1H0Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LCG P P P 0 1 N N N -3.891 -2.803 5.998 -0.875 -0.421 4.967 P LCG 1 LCG OP1 O1P O 0 1 N N N -3.951 -1.905 7.172 -2.171 0.235 4.681 OP1 LCG 2 LCG "O5'" O5* O 0 1 N N N -2.350 -3.199 5.735 -0.131 -0.765 3.581 "O5'" LCG 3 LCG "C5'" C5* C 0 1 N N N -1.458 -3.515 6.788 0.068 0.475 2.901 "C5'" LCG 4 LCG "C3'" C3* C 0 1 N N S 0.543 -2.751 5.353 1.110 1.467 0.675 "C3'" LCG 5 LCG "C6'" C6* C 0 1 N N N 1.036 -4.135 7.189 2.200 -0.414 1.649 "C6'" LCG 6 LCG N9 N9 N 0 1 Y N N 0.621 -4.660 3.005 -0.218 -0.007 -1.666 N9 LCG 7 LCG C8 C8 C 0 1 Y N N -0.581 -4.331 2.417 -1.343 0.730 -1.438 C8 LCG 8 LCG C4 C4 C 0 1 Y N N 1.498 -4.820 1.957 -0.140 -0.231 -3.014 C4 LCG 9 LCG N7 N7 N 0 1 Y N N -0.544 -4.300 1.115 -1.952 0.966 -2.563 N7 LCG 10 LCG C5 C5 C 0 1 Y N N 0.771 -4.627 0.803 -1.256 0.396 -3.577 C5 LCG 11 LCG C6 C6 C 0 1 N N N 1.413 -4.777 -0.469 -1.436 0.327 -4.979 C6 LCG 12 LCG "C2'" C2* C 0 1 N N R 1.703 -3.696 5.061 1.839 0.600 -0.416 "C2'" LCG 13 LCG O6 O6 O 0 1 N N N 0.924 -4.659 -1.590 -2.394 0.860 -5.512 O6 LCG 14 LCG "C4'" C4* C 0 1 N N R -0.095 -3.864 6.178 0.775 0.218 1.569 "C4'" LCG 15 LCG "C1'" C1* C 0 1 N N R 0.963 -4.885 4.435 0.732 -0.473 -0.654 "C1'" LCG 16 LCG C2 C2 C 0 1 N N N 3.420 -5.262 0.850 0.546 -0.935 -5.104 C2 LCG 17 LCG N1 N1 N 0 1 N N N 2.763 -5.106 -0.353 -0.517 -0.338 -5.712 N1 LCG 18 LCG "O4'" O4* O 0 1 N N N -0.183 -4.968 5.272 0.071 -0.629 0.617 "O4'" LCG 19 LCG OP2 O2P O 0 1 N N N -4.472 -2.368 4.709 -1.133 -1.781 5.789 OP2 LCG 20 LCG N2 N2 N 0 1 N N N 4.718 -5.551 0.790 1.460 -1.610 -5.873 N2 LCG 21 LCG N3 N3 N 0 1 N N N 2.823 -5.135 2.047 0.725 -0.878 -3.803 N3 LCG 22 LCG "O2'" O2* O 0 1 N N N 2.184 -4.110 6.342 2.830 -0.094 0.393 "O2'" LCG 23 LCG "O3'" O3* O 0 1 N N N 0.909 -1.588 6.085 1.991 2.387 1.324 "O3'" LCG 24 LCG OP3 O3P O 0 1 N Y N -4.586 -4.199 6.407 0.046 0.567 5.841 OP3 LCG 25 LCG "H5'" 1H5* H 0 1 N N N -1.835 -4.366 7.355 -0.896 0.947 2.715 "H5'" LCG 26 LCG "H5''" 2H5* H 0 0 N N N -1.351 -2.655 7.449 0.681 1.133 3.517 "H5''" LCG 27 LCG "H3'" H3* H 0 1 N N N -0.050 -2.509 4.469 0.215 1.958 0.291 "H3'" LCG 28 LCG "H6'1" 1H6* H 0 0 N N N 0.928 -5.075 7.741 2.761 0.021 2.475 "H6'1" LCG 29 LCG "H6'2" 2H6* H 0 0 N N N 1.099 -3.316 7.906 2.127 -1.495 1.770 "H6'2" LCG 30 LCG H8 H8 H 0 1 N N N -1.497 -4.127 2.955 -1.679 1.067 -0.468 H8 LCG 31 LCG "H2'" 1H2* H 0 1 N N N 2.475 -3.281 4.415 2.216 1.129 -1.292 "H2'" LCG 32 LCG "H1'" H1* H 0 1 N N N 1.569 -5.791 4.496 1.181 -1.417 -0.964 "H1'" LCG 33 LCG H1 H1 H 0 1 N N N 3.279 -5.235 -1.211 -0.620 -0.399 -6.674 H1 LCG 34 LCG HOP2 2HOP H 0 0 N N N -4.433 -2.945 3.955 -1.580 -1.531 6.610 HOP2 LCG 35 LCG H21 1H2 H 0 1 N N N 5.180 -5.637 -0.108 2.225 -2.036 -5.456 H21 LCG 36 LCG H22 2H2 H 0 1 N N N 5.229 -5.684 1.649 1.340 -1.664 -6.834 H22 LCG 37 LCG "HO3'" H3T H 0 0 N Y N 1.306 -0.895 5.571 2.325 2.983 0.640 "HO3'" LCG 38 LCG HOP3 3HOP H 0 0 N N N -4.547 -4.776 5.653 0.878 0.102 6.004 HOP3 LCG 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LCG P OP1 DOUB N N 1 LCG P "O5'" SING N N 2 LCG P OP2 SING N N 3 LCG P OP3 SING N N 4 LCG "O5'" "C5'" SING N N 5 LCG "C5'" "C4'" SING N N 6 LCG "C5'" "H5'" SING N N 7 LCG "C5'" "H5''" SING N N 8 LCG "C3'" "C2'" SING N N 9 LCG "C3'" "C4'" SING N N 10 LCG "C3'" "O3'" SING N N 11 LCG "C3'" "H3'" SING N N 12 LCG "C6'" "C4'" SING N N 13 LCG "C6'" "O2'" SING N N 14 LCG "C6'" "H6'1" SING N N 15 LCG "C6'" "H6'2" SING N N 16 LCG N9 C8 SING Y N 17 LCG N9 C4 SING Y N 18 LCG N9 "C1'" SING N N 19 LCG C8 N7 DOUB Y N 20 LCG C8 H8 SING N N 21 LCG C4 C5 DOUB Y N 22 LCG C4 N3 SING N N 23 LCG N7 C5 SING Y N 24 LCG C5 C6 SING N N 25 LCG C6 O6 DOUB N N 26 LCG C6 N1 SING N N 27 LCG "C2'" "C1'" SING N N 28 LCG "C2'" "O2'" SING N N 29 LCG "C2'" "H2'" SING N N 30 LCG "C4'" "O4'" SING N N 31 LCG "C1'" "O4'" SING N N 32 LCG "C1'" "H1'" SING N N 33 LCG C2 N1 SING N N 34 LCG C2 N2 SING N N 35 LCG C2 N3 DOUB N N 36 LCG N1 H1 SING N N 37 LCG OP2 HOP2 SING N N 38 LCG N2 H21 SING N N 39 LCG N2 H22 SING N N 40 LCG "O3'" "HO3'" SING N N 41 LCG OP3 HOP3 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LCG SMILES ACDLabs 10.04 "O=C2NC(=Nc1n(cnc12)C4OC3(C(O)C4OC3)COP(=O)(O)O)N" LCG SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@]4(CO[C@@H]3[C@@H]4O)CO[P](O)(O)=O" LCG SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[C]4(CO[CH]3[CH]4O)CO[P](O)(O)=O" LCG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@H]4[C@@H]([C@@](O3)(CO4)COP(=O)(O)O)O)N=C(NC2=O)N" LCG SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C4C(C(O3)(CO4)COP(=O)(O)O)O)N=C(NC2=O)N" LCG InChI InChI 1.03 "InChI=1S/C11H14N5O8P/c12-10-14-7-4(8(18)15-10)13-3-16(7)9-5-6(17)11(24-9,1-22-5)2-23-25(19,20)21/h3,5-6,9,17H,1-2H2,(H2,19,20,21)(H3,12,14,15,18)/t5-,6+,9-,11-/m1/s1" LCG InChIKey InChI 1.03 FZGXOAHULCKQGE-HLJYALQUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LCG "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-9-{2,5-anhydro-4-[(phosphonooxy)methyl]-alpha-L-lyxofuranosyl}-1,9-dihydro-6H-purin-6-one" LCG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,4R,6R,7S)-6-(2-amino-6-oxo-1H-purin-9-yl)-7-hydroxy-2,5-dioxabicyclo[2.2.1]heptan-4-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LCG "Create component" 2002-06-27 EBI LCG "Modify linking type" 2011-06-04 RCSB LCG "Modify descriptor" 2011-06-04 RCSB #