data_LD0 # _chem_comp.id LD0 _chem_comp.name "(2R,4S,5R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H19 N5 O5 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-01 _chem_comp.pdbx_modified_date 2022-05-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 433.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LD0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7U49 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LD0 C15 C1 C 0 1 N N N -50.491 14.221 36.728 -0.491 -1.648 -1.510 C15 LD0 1 LD0 C17 C2 C 0 1 N N R -51.813 14.694 34.528 -1.250 -0.591 0.601 C17 LD0 2 LD0 C20 C3 C 0 1 N N R -53.280 12.296 33.397 -3.981 0.732 0.421 C20 LD0 3 LD0 C21 C4 C 0 1 N N N -51.991 12.150 33.813 -2.836 1.747 0.521 C21 LD0 4 LD0 C01 C5 C 0 1 N N N -53.437 17.870 40.582 5.924 -3.477 -0.311 C01 LD0 5 LD0 C04 C6 C 0 1 N N N -54.476 15.584 38.364 3.581 -0.770 0.042 C04 LD0 6 LD0 C05 C7 C 0 1 Y N N -55.689 15.283 37.412 3.634 0.698 0.210 C05 LD0 7 LD0 C06 C8 C 0 1 Y N N -56.852 16.077 37.361 4.782 1.396 0.112 C06 LD0 8 LD0 C08 C9 C 0 1 Y N N -56.784 14.089 35.776 2.716 2.706 0.591 C08 LD0 9 LD0 C11 C10 C 0 1 N N N -53.094 14.997 37.981 2.274 -1.469 0.035 C11 LD0 10 LD0 C14 C11 C 0 1 N N R -51.814 13.981 35.909 -0.160 -1.442 -0.054 C14 LD0 11 LD0 C19 C12 C 0 1 N N S -53.791 13.902 33.031 -3.607 -0.543 1.179 C19 LD0 12 LD0 C23 C13 C 0 1 N N N -54.307 11.348 33.963 -4.233 0.394 -1.050 C23 LD0 13 LD0 C25 C14 C 0 1 N N N -54.917 14.138 31.913 -4.823 -1.425 1.294 C25 LD0 14 LD0 N03 N1 N 0 1 N N N -54.588 16.288 39.390 4.684 -1.449 -0.100 N03 LD0 15 LD0 N09 N2 N 0 1 Y N N -55.699 14.229 36.538 2.546 1.428 0.464 N09 LD0 16 LD0 N10 N3 N 0 1 N N N -57.023 13.048 34.784 1.712 3.622 0.858 N10 LD0 17 LD0 N13 N4 N 0 1 N N N -53.007 14.567 36.568 1.130 -0.758 0.062 N13 LD0 18 LD0 N18 N5 N 0 1 N N N -53.312 15.023 33.971 -2.547 -1.272 0.480 N18 LD0 19 LD0 O02 O1 O 0 1 N N N -53.448 16.525 40.190 4.643 -2.864 -0.153 O02 LD0 20 LD0 O12 O2 O 0 1 N N N -52.208 14.904 38.733 2.235 -2.683 0.006 O12 LD0 21 LD0 O16 O3 O 0 1 N N N -49.887 15.262 36.602 0.274 -1.267 -2.362 O16 LD0 22 LD0 O26 O4 O 0 1 N N N -54.781 13.623 30.737 -4.964 -2.360 0.541 O26 LD0 23 LD0 O27 O5 O 0 1 N N N -55.963 14.821 32.180 -5.749 -1.174 2.233 O27 LD0 24 LD0 S07 S1 S 0 1 Y N N -57.835 15.354 36.186 4.418 3.100 0.373 S07 LD0 25 LD0 S22 S2 S 0 1 N N N -51.215 13.676 33.643 -1.352 1.020 -0.236 S22 LD0 26 LD0 S24 S3 S 0 1 N N N -55.545 11.115 32.674 -4.825 1.873 -1.918 S24 LD0 27 LD0 H1 H1 H 0 1 N N N -50.124 13.459 37.400 -1.411 -2.140 -1.790 H1 LD0 28 LD0 H2 H2 H 0 1 N N N -51.215 15.617 34.562 -1.012 -0.441 1.655 H2 LD0 29 LD0 H3 H3 H 0 1 N N N -53.212 11.908 32.370 -4.885 1.161 0.854 H3 LD0 30 LD0 H4 H4 H 0 1 N N N -51.970 11.834 34.866 -3.108 2.659 -0.010 H4 LD0 31 LD0 H5 H5 H 0 1 N N N -51.480 11.398 33.194 -2.643 1.977 1.569 H5 LD0 32 LD0 H6 H6 H 0 1 N N N -52.552 18.063 41.206 6.378 -3.134 -1.240 H6 LD0 33 LD0 H7 H7 H 0 1 N N N -53.404 18.512 39.689 6.563 -3.205 0.529 H7 LD0 34 LD0 H8 H8 H 0 1 N N N -54.347 18.091 41.159 5.806 -4.560 -0.342 H8 LD0 35 LD0 H9 H9 H 0 1 N N N -57.070 16.958 37.946 5.759 0.982 -0.092 H9 LD0 36 LD0 H10 H10 H 0 1 N N N -51.953 12.900 35.760 -0.105 -2.409 0.446 H10 LD0 37 LD0 H11 H11 H 0 1 N N N -52.967 14.061 32.320 -3.263 -0.277 2.179 H11 LD0 38 LD0 H12 H12 H 0 1 N N N -54.770 11.781 34.862 -3.306 0.051 -1.508 H12 LD0 39 LD0 H13 H13 H 0 1 N N N -53.838 10.387 34.219 -4.985 -0.392 -1.118 H13 LD0 40 LD0 H14 H14 H 0 1 N N N -57.920 13.186 34.365 1.924 4.565 0.938 H14 LD0 41 LD0 H15 H15 H 0 1 N N N -56.315 13.091 34.079 0.796 3.321 0.965 H15 LD0 42 LD0 H16 H16 H 0 1 N N N -53.826 14.682 36.006 1.160 0.207 0.157 H16 LD0 43 LD0 H17 H17 H 0 1 N N N -53.295 15.889 33.470 -2.488 -2.224 0.807 H17 LD0 44 LD0 H19 H19 H 0 1 N N N -56.527 14.850 31.416 -6.511 -1.768 2.268 H19 LD0 45 LD0 H20 H20 H 0 1 N N N -56.378 10.295 33.244 -5.001 1.435 -3.177 H20 LD0 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LD0 O26 C25 DOUB N N 1 LD0 C25 O27 SING N N 2 LD0 C25 C19 SING N N 3 LD0 S24 C23 SING N N 4 LD0 C19 C20 SING N N 5 LD0 C19 N18 SING N N 6 LD0 C20 C21 SING N N 7 LD0 C20 C23 SING N N 8 LD0 S22 C21 SING N N 9 LD0 S22 C17 SING N N 10 LD0 N18 C17 SING N N 11 LD0 C17 C14 SING N N 12 LD0 N10 C08 SING N N 13 LD0 C08 S07 SING Y N 14 LD0 C08 N09 DOUB Y N 15 LD0 C14 N13 SING N N 16 LD0 C14 C15 SING N N 17 LD0 S07 C06 SING Y N 18 LD0 N09 C05 SING Y N 19 LD0 N13 C11 SING N N 20 LD0 O16 C15 DOUB N N 21 LD0 C06 C05 DOUB Y N 22 LD0 C05 C04 SING N N 23 LD0 C11 C04 SING N N 24 LD0 C11 O12 DOUB N N 25 LD0 C04 N03 DOUB N Z 26 LD0 N03 O02 SING N N 27 LD0 O02 C01 SING N N 28 LD0 C15 H1 SING N N 29 LD0 C17 H2 SING N N 30 LD0 C20 H3 SING N N 31 LD0 C21 H4 SING N N 32 LD0 C21 H5 SING N N 33 LD0 C01 H6 SING N N 34 LD0 C01 H7 SING N N 35 LD0 C01 H8 SING N N 36 LD0 C06 H9 SING N N 37 LD0 C14 H10 SING N N 38 LD0 C19 H11 SING N N 39 LD0 C23 H12 SING N N 40 LD0 C23 H13 SING N N 41 LD0 N10 H14 SING N N 42 LD0 N10 H15 SING N N 43 LD0 N13 H16 SING N N 44 LD0 N18 H17 SING N N 45 LD0 O27 H19 SING N N 46 LD0 S24 H20 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LD0 SMILES ACDLabs 12.01 "SCC1CSC(NC1C(=O)O)C(C=O)NC(=O)C(=N\OC)/c1csc(N)n1" LD0 InChI InChI 1.03 "InChI=1S/C14H19N5O5S3/c1-24-19-10(8-5-27-14(15)17-8)11(21)16-7(2-20)12-18-9(13(22)23)6(3-25)4-26-12/h2,5-7,9,12,18,25H,3-4H2,1H3,(H2,15,17)(H,16,21)(H,22,23)/b19-10-/t6-,7-,9+,12-/m1/s1" LD0 InChIKey InChI 1.03 KKQVBXSQHHBKNE-AZYSTIKISA-N LD0 SMILES_CANONICAL CACTVS 3.385 "CO/N=C(C(=O)N[C@H](C=O)[C@@H]1N[C@@H]([C@H](CS)CS1)C(O)=O)/c2csc(N)n2" LD0 SMILES CACTVS 3.385 "CON=C(C(=O)N[CH](C=O)[CH]1N[CH]([CH](CS)CS1)C(O)=O)c2csc(N)n2" LD0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO/N=C(/c1csc(n1)N)\C(=O)N[C@H](C=O)[C@@H]2NC([C@@H](CS2)CS)C(=O)O" LD0 SMILES "OpenEye OEToolkits" 2.0.7 "CON=C(c1csc(n1)N)C(=O)NC(C=O)C2NC(C(CS2)CS)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LD0 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,4S,5R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid" LD0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},5~{R})-2-[(1~{R})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LD0 "Create component" 2022-03-01 RCSB LD0 "Modify value order" 2022-03-29 RCSB LD0 "Initial release" 2022-05-25 RCSB ##