data_LDO # _chem_comp.id LDO _chem_comp.name 6-HYDROXY-L-NORLEUCINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-09-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LDO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JSR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LDO N N N 0 1 N N N Y Y N 17.119 -10.091 11.470 1.775 0.241 1.358 N LDO 1 LDO CA CA C 0 1 N N S Y N N 15.775 -9.793 11.980 0.329 0.501 1.386 CA LDO 2 LDO CB CB C 0 1 N N N N N N 15.746 -9.839 13.512 -0.333 -0.171 0.183 CB LDO 3 LDO CG CG C 0 1 N N N N N N 15.938 -11.208 14.121 0.261 0.392 -1.108 CG LDO 4 LDO CD CD C 0 1 N N N N N N 15.265 -11.308 15.489 -0.401 -0.281 -2.312 CD LDO 5 LDO CE CE C 0 1 N N N N N N 15.847 -10.358 16.535 0.193 0.282 -3.604 CE LDO 6 LDO OZ OZ O 0 1 N N N N N N 15.476 -9.011 16.291 -0.425 -0.346 -4.727 OZ LDO 7 LDO C C C 0 1 N N N Y N Y 15.305 -8.416 11.539 -0.256 -0.053 2.658 C LDO 8 LDO O O O 0 1 N N N Y N Y 14.097 -8.267 11.236 0.242 -1.021 3.181 O LDO 9 LDO OXT OXT O 0 1 N Y N Y N Y 16.151 -7.500 11.522 -1.333 0.527 3.211 OXT LDO 10 LDO H HN1 H 0 1 N N N Y Y N 17.138 -10.060 10.450 1.890 -0.760 1.399 HN1 LDO 11 LDO H2 HN2 H 0 1 N Y N Y Y N 17.467 -10.980 11.826 2.104 0.534 0.450 HN2 LDO 12 LDO HA HA1 H 0 1 N N N Y N N 15.095 -10.571 11.561 0.153 1.576 1.344 HA1 LDO 13 LDO HB1 HB1 H 0 1 N N N N N N 16.493 -9.125 13.930 -0.157 -1.246 0.225 HB1 LDO 14 LDO HB2 HB2 H 0 1 N N N N N N 14.803 -9.380 13.891 -1.405 0.021 0.203 HB2 LDO 15 LDO HG1 HG1 H 0 1 N N N N N N 15.589 -12.013 13.433 0.085 1.467 -1.151 HG1 LDO 16 LDO HG2 HG2 H 0 1 N N N N N N 17.017 -11.483 14.175 1.334 0.199 -1.129 HG2 LDO 17 LDO HD1 HD1 H 0 1 N N N N N N 14.163 -11.162 15.396 -0.225 -1.355 -2.269 HD1 LDO 18 LDO HD2 HD2 H 0 1 N N N N N N 15.284 -12.359 15.859 -1.473 -0.087 -2.291 HD2 LDO 19 LDO HE1 HE1 H 0 1 N N N N N N 15.570 -10.673 17.567 0.017 1.357 -3.646 HE1 LDO 20 LDO HE2 HE2 H 0 1 N N N N N N 16.954 -10.466 16.609 1.266 0.089 -3.624 HE2 LDO 21 LDO HOZ HOZ H 0 1 N N N N N N 15.837 -8.420 16.941 -0.023 0.036 -5.519 HOZ LDO 22 LDO HXT HXT H 0 1 N Y N Y N Y 15.857 -6.639 11.246 -1.709 0.170 4.027 HXT LDO 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LDO N CA SING N N 1 LDO N H SING N N 2 LDO N H2 SING N N 3 LDO CA CB SING N N 4 LDO CA C SING N N 5 LDO CA HA SING N N 6 LDO CB CG SING N N 7 LDO CB HB1 SING N N 8 LDO CB HB2 SING N N 9 LDO CG CD SING N N 10 LDO CG HG1 SING N N 11 LDO CG HG2 SING N N 12 LDO CD CE SING N N 13 LDO CD HD1 SING N N 14 LDO CD HD2 SING N N 15 LDO CE OZ SING N N 16 LDO CE HE1 SING N N 17 LDO CE HE2 SING N N 18 LDO OZ HOZ SING N N 19 LDO C O DOUB N N 20 LDO C OXT SING N N 21 LDO OXT HXT SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LDO SMILES ACDLabs 10.04 "O=C(O)C(N)CCCCO" LDO SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCCCO)C(O)=O" LDO SMILES CACTVS 3.341 "N[CH](CCCCO)C(O)=O" LDO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CCO)C[C@@H](C(=O)O)N" LDO SMILES "OpenEye OEToolkits" 1.5.0 "C(CCO)CC(C(=O)O)N" LDO InChI InChI 1.03 "InChI=1S/C6H13NO3/c7-5(6(9)10)3-1-2-4-8/h5,8H,1-4,7H2,(H,9,10)/t5-/m0/s1" LDO InChIKey InChI 1.03 OLUWXTFAPJJWPL-YFKPBYRVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LDO "SYSTEMATIC NAME" ACDLabs 10.04 6-hydroxy-L-norleucine LDO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-6-hydroxy-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LDO "Create component" 2001-09-11 RCSB LDO "Modify descriptor" 2011-06-04 RCSB LDO "Modify backbone" 2023-11-03 PDBE LDO "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 LDO LEU Norleucine "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 2 LDO LEU Hydroxylation "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 3 LDO THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" CD OG1 ? ? 4 LDO TYR None "Covalent chemical modification" "Amino-acid side chain" "Any position" CD OH ? ? #