data_LF7 # _chem_comp.id LF7 _chem_comp.name ;2-{[(1r,3s,5R,7S)-3-hydroxytricyclo[3.3.1.1~3,7~]decan-1-yl]amino}-1-{(2S)-2-[(E)-iminomethyl]pyrrolidin-1-yl}ethan-1-o ne ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Vildagliptin, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-11 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 305.415 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LF7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3W2T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LF7 O20 O1 O 0 1 N N N 57.170 63.046 35.588 2.171 -1.640 -0.448 O20 LF7 1 LF7 C14 C1 C 0 1 N N N 56.787 64.063 36.173 2.072 -0.440 -0.302 C14 LF7 2 LF7 N15 N1 N 0 1 N N N 57.158 64.278 37.488 3.178 0.329 -0.276 N15 LF7 3 LF7 C19 C2 C 0 1 N N N 57.117 65.673 37.947 3.204 1.793 -0.100 C19 LF7 4 LF7 C18 C3 C 0 1 N N N 58.027 65.703 39.164 4.611 2.099 0.469 C18 LF7 5 LF7 C17 C4 C 0 1 N N N 59.099 64.671 38.851 5.488 1.076 -0.299 C17 LF7 6 LF7 C16 C5 C 0 1 N N S 58.426 63.662 37.944 4.560 -0.153 -0.414 C16 LF7 7 LF7 C20 C6 C 0 1 N N N 58.063 62.488 38.810 4.872 -1.137 0.683 C20 LF7 8 LF7 N2 N2 N 0 1 N N N 56.854 62.375 39.196 5.302 -2.306 0.391 N2 LF7 9 LF7 C13 C7 C 0 1 N N N 55.833 65.043 35.492 0.712 0.192 -0.154 C13 LF7 10 LF7 N12 N3 N 0 1 N N N 55.102 64.461 34.358 -0.322 -0.850 -0.221 N12 LF7 11 LF7 C7 C8 C 0 1 N N N 53.800 63.776 34.475 -1.664 -0.270 -0.080 C7 LF7 12 LF7 C8 C9 C 0 1 N N N 53.840 62.743 35.623 -1.773 0.443 1.269 C8 LF7 13 LF7 C1 C10 C 0 1 N N R 52.489 62.035 35.786 -3.171 1.047 1.415 C1 LF7 14 LF7 C2 C11 C 0 1 N N N 51.365 63.066 36.011 -3.413 2.052 0.287 C2 LF7 15 LF7 C10 C12 C 0 1 N N S 51.298 64.055 34.840 -3.304 1.339 -1.062 C10 LF7 16 LF7 C9 C13 C 0 1 N N N 52.661 64.769 34.761 -1.906 0.735 -1.209 C9 LF7 17 LF7 C5 C14 C 0 1 N N N 51.034 63.285 33.528 -4.351 0.226 -1.137 C5 LF7 18 LF7 C21 C15 C 0 1 N N N 52.229 61.282 34.479 -4.218 -0.066 1.341 C21 LF7 19 LF7 C3 C16 C 0 1 N N N 52.169 62.264 33.308 -4.109 -0.779 -0.009 C3 LF7 20 LF7 O4 O2 O 0 1 N N N 51.940 61.464 32.151 -5.087 -1.818 -0.078 O4 LF7 21 LF7 C6 C17 C 0 1 N N N 53.491 63.030 33.162 -2.711 -1.383 -0.155 C6 LF7 22 LF7 H1 H1 H 0 1 N N N 57.492 66.350 37.165 3.065 2.293 -1.058 H1 LF7 23 LF7 H2 H2 H 0 1 N N N 56.092 65.961 38.222 2.433 2.103 0.606 H2 LF7 24 LF7 H3 H3 H 0 1 N N N 58.472 66.701 39.295 4.912 3.122 0.239 H3 LF7 25 LF7 H4 H4 H 0 1 N N N 57.473 65.427 40.073 4.647 1.917 1.543 H4 LF7 26 LF7 H5 H5 H 0 1 N N N 59.449 64.186 39.774 5.752 1.457 -1.286 H5 LF7 27 LF7 H6 H6 H 0 1 N N N 59.951 65.143 38.339 6.384 0.831 0.270 H6 LF7 28 LF7 H7 H7 H 0 1 N N N 59.074 63.370 37.105 4.692 -0.627 -1.386 H7 LF7 29 LF7 H8 H8 H 0 1 N N N 58.807 61.760 39.097 4.731 -0.856 1.717 H8 LF7 30 LF7 H9 H9 H 0 1 N N N 56.717 61.564 39.765 5.502 -2.940 1.098 H9 LF7 31 LF7 H10 H10 H 0 1 N N N 56.418 65.900 35.126 0.651 0.703 0.807 H10 LF7 32 LF7 H11 H11 H 0 1 N N N 55.101 65.390 36.236 0.556 0.911 -0.959 H11 LF7 33 LF7 H12 H12 H 0 1 N N N 55.724 63.792 33.950 -0.162 -1.563 0.474 H12 LF7 34 LF7 H14 H14 H 0 1 N N N 54.613 61.992 35.402 -1.600 -0.273 2.073 H14 LF7 35 LF7 H15 H15 H 0 1 N N N 54.089 63.260 36.561 -1.027 1.236 1.322 H15 LF7 36 LF7 H16 H16 H 0 1 N N N 52.529 61.330 36.630 -3.248 1.555 2.377 H16 LF7 37 LF7 H17 H17 H 0 1 N N N 51.563 63.619 36.941 -4.409 2.482 0.391 H17 LF7 38 LF7 H18 H18 H 0 1 N N N 50.403 62.539 36.095 -2.667 2.845 0.340 H18 LF7 39 LF7 H19 H19 H 0 1 N N N 50.498 64.790 35.012 -3.477 2.055 -1.866 H19 LF7 40 LF7 H20 H20 H 0 1 N N N 52.857 65.272 35.719 -1.160 1.528 -1.156 H20 LF7 41 LF7 H21 H21 H 0 1 N N N 52.627 65.516 33.955 -1.829 0.227 -2.170 H21 LF7 42 LF7 H22 H22 H 0 1 N N N 51.005 63.991 32.685 -5.347 0.656 -1.033 H22 LF7 43 LF7 H23 H23 H 0 1 N N N 50.071 62.757 33.597 -4.274 -0.282 -2.098 H23 LF7 44 LF7 H24 H24 H 0 1 N N N 51.272 60.745 34.553 -4.045 -0.781 2.145 H24 LF7 45 LF7 H25 H25 H 0 1 N N N 53.041 60.561 34.307 -5.214 0.365 1.445 H25 LF7 46 LF7 H26 H26 H 0 1 N N N 51.121 60.993 32.248 -5.999 -1.507 0.007 H26 LF7 47 LF7 H27 H27 H 0 1 N N N 54.303 62.321 32.943 -2.634 -1.891 -1.117 H27 LF7 48 LF7 H28 H28 H 0 1 N N N 53.406 63.755 32.339 -2.539 -2.099 0.649 H28 LF7 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LF7 O4 C3 SING N N 1 LF7 C6 C3 SING N N 2 LF7 C6 C7 SING N N 3 LF7 C3 C5 SING N N 4 LF7 C3 C21 SING N N 5 LF7 C5 C10 SING N N 6 LF7 N12 C7 SING N N 7 LF7 N12 C13 SING N N 8 LF7 C7 C9 SING N N 9 LF7 C7 C8 SING N N 10 LF7 C21 C1 SING N N 11 LF7 C9 C10 SING N N 12 LF7 C10 C2 SING N N 13 LF7 C13 C14 SING N N 14 LF7 O20 C14 DOUB N N 15 LF7 C8 C1 SING N N 16 LF7 C1 C2 SING N N 17 LF7 C14 N15 SING N N 18 LF7 N15 C16 SING N N 19 LF7 N15 C19 SING N N 20 LF7 C16 C20 SING N N 21 LF7 C16 C17 SING N N 22 LF7 C19 C18 SING N N 23 LF7 C20 N2 DOUB N N 24 LF7 C17 C18 SING N N 25 LF7 C19 H1 SING N N 26 LF7 C19 H2 SING N N 27 LF7 C18 H3 SING N N 28 LF7 C18 H4 SING N N 29 LF7 C17 H5 SING N N 30 LF7 C17 H6 SING N N 31 LF7 C16 H7 SING N N 32 LF7 C20 H8 SING N N 33 LF7 N2 H9 SING N N 34 LF7 C13 H10 SING N N 35 LF7 C13 H11 SING N N 36 LF7 N12 H12 SING N N 37 LF7 C8 H14 SING N N 38 LF7 C8 H15 SING N N 39 LF7 C1 H16 SING N N 40 LF7 C2 H17 SING N N 41 LF7 C2 H18 SING N N 42 LF7 C10 H19 SING N N 43 LF7 C9 H20 SING N N 44 LF7 C9 H21 SING N N 45 LF7 C5 H22 SING N N 46 LF7 C5 H23 SING N N 47 LF7 C21 H24 SING N N 48 LF7 C21 H25 SING N N 49 LF7 O4 H26 SING N N 50 LF7 C6 H27 SING N N 51 LF7 C6 H28 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LF7 SMILES ACDLabs 12.01 "O=C(N1C(CCC1)\C=N)CNC24CC3CC(C2)CC(C3)(O)C4" LF7 InChI InChI 1.03 "InChI=1S/C17H27N3O2/c18-9-14-2-1-3-20(14)15(21)10-19-16-5-12-4-13(6-16)8-17(22,7-12)11-16/h9,12-14,18-19,22H,1-8,10-11H2/b18-9+/t12-,13+,14-,16+,17-/m0/s1" LF7 InChIKey InChI 1.03 LUWVSODOPBYGON-FEZPVXCISA-N LF7 SMILES_CANONICAL CACTVS 3.385 "OC12C[C@H]3C[C@@H](C1)CC(C3)(C2)NCC(=O)N4CCC[C@H]4C=N" LF7 SMILES CACTVS 3.385 "OC12C[CH]3C[CH](C1)CC(C3)(C2)NCC(=O)N4CCC[CH]4C=N" LF7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C/[C@@H]1CCCN1C(=O)CNC23C[C@H]4C[C@@H](C2)CC(C4)(C3)O" LF7 SMILES "OpenEye OEToolkits" 1.7.6 "C1CC(N(C1)C(=O)CNC23CC4CC(C2)CC(C4)(C3)O)C=N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LF7 "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(1r,3s,5R,7S)-3-hydroxytricyclo[3.3.1.1~3,7~]decan-1-yl]amino}-1-{(2S)-2-[(E)-iminomethyl]pyrrolidin-1-yl}ethan-1-one" LF7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(2S)-2-(iminomethyl)pyrrolidin-1-yl]-2-[[(5R,7S)-3-oxidanyl-1-adamantyl]amino]ethanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LF7 "Create component" 2012-12-11 PDBJ LF7 "Modify synonyms" 2012-12-13 PDBJ LF7 "Initial release" 2013-05-15 RCSB LF7 "Other modification" 2018-02-01 RCSB LF7 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LF7 _pdbx_chem_comp_synonyms.name "Vildagliptin, bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##